Wall clock time and date at job start Tue Mar 31 2020 22:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47555 * 2 1 4 4 C 1.53000 * 109.47204 * 120.00807 * 2 1 3 5 5 N 1.46494 * 109.47504 * 64.99623 * 4 2 1 6 6 C 1.36280 * 119.81604 * 269.73192 * 5 4 2 7 7 N 1.36249 * 120.69818 * 359.97438 * 6 5 4 8 8 C 1.40610 * 118.60076 * 179.74629 * 6 5 4 9 9 C 1.41507 * 120.85467 * 180.23518 * 8 6 5 10 10 O 1.21416 * 119.99759 * 354.24862 * 9 8 6 11 11 C 1.50700 * 119.99799 * 174.24694 * 9 8 6 12 12 N 1.46903 * 109.46587 * 179.97438 * 11 9 8 13 13 C 1.46904 * 110.99773 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.46831 * 324.99576 * 13 12 11 15 15 C 1.52991 * 109.47404 * 84.99565 * 13 12 11 16 16 C 1.50693 * 109.47244 * 205.00240 * 13 12 11 17 17 H 1.07998 * 119.99903 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00364 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99968 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 120.00351 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46962 * 90.00112 * 20 18 16 22 22 H 1.48498 * 109.47459 * 210.00389 * 20 18 16 23 23 H 1.48508 * 109.47119 * 330.00159 * 20 18 16 24 24 C 1.41822 * 118.28804 * 0.53046 * 8 6 5 25 25 O 1.35028 * 120.26054 * 179.69902 * 24 8 6 26 26 N 1.32302 * 119.47519 * 359.72760 * 24 8 6 27 27 C 1.33183 * 121.40293 * 359.97438 * 26 24 8 28 28 O 1.21891 * 119.06940 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46941 * 299.99771 * 1 2 3 30 30 H 1.09004 * 109.47069 * 59.99532 * 1 2 3 31 31 H 1.08991 * 109.47824 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46941 * 240.00229 * 2 1 3 33 33 H 1.08998 * 109.47153 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47650 * 300.00650 * 3 2 1 35 35 H 1.09004 * 109.46809 * 60.00148 * 3 2 1 36 36 H 1.09002 * 109.47207 * 184.99675 * 4 2 1 37 37 H 1.09002 * 109.46660 * 304.99303 * 4 2 1 38 38 H 0.97003 * 120.00240 * 5.19402 * 7 6 5 39 39 H 0.96998 * 120.00110 * 185.18648 * 7 6 5 40 40 H 1.08998 * 109.47337 * 299.99971 * 11 9 8 41 41 H 1.08995 * 109.47256 * 60.00344 * 11 9 8 42 42 H 1.00897 * 111.00143 * 303.95186 * 12 11 9 43 43 H 1.09005 * 109.47427 * 180.02562 * 15 13 12 44 44 H 1.09005 * 109.47733 * 300.00133 * 15 13 12 45 45 H 1.09006 * 109.47118 * 60.00186 * 15 13 12 46 46 H 0.96996 * 119.99992 * 180.02562 * 19 18 16 47 47 H 0.96703 * 113.99858 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2491 5 7 1.6524 -2.1329 1.1904 6 6 0.4653 -2.5326 1.7274 7 7 -0.3679 -1.6325 2.3206 8 6 0.1163 -3.8926 1.6520 9 6 -1.1069 -4.3589 2.1894 10 8 -1.8222 -3.6033 2.8152 11 6 -1.5217 -5.7931 1.9849 12 7 -2.8185 -6.0251 2.6348 13 6 -3.2554 -7.4163 2.4564 14 1 -2.9402 -7.7731 1.4757 15 6 -2.6280 -8.2914 3.5433 16 6 -4.7571 -7.4882 2.5581 17 1 -5.3298 -6.5904 2.7378 18 6 -5.4002 -8.7002 2.4218 19 7 -4.7028 -9.7937 2.2034 20 14 -7.2617 -8.7895 2.5486 21 1 -7.8591 -8.6026 1.2019 22 1 -7.6583 -10.1156 3.0864 23 1 -7.7477 -7.7210 3.4583 24 6 1.0247 -4.7860 1.0291 25 8 0.7325 -6.1013 0.9403 26 7 2.1609 -4.3206 0.5363 27 6 2.4720 -3.0278 0.6115 28 8 3.5302 -2.6451 0.1429 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1263 -0.6446 1.2950 37 1 1.6054 -0.2619 2.1369 38 1 -0.1551 -0.6863 2.2979 39 1 -1.1740 -1.9377 2.7655 40 1 -1.6079 -5.9978 0.9177 41 1 -0.7731 -6.4537 2.4222 42 1 -2.7815 -5.7808 3.6131 43 1 -2.9518 -9.3237 3.4106 44 1 -1.5417 -8.2394 3.4697 45 1 -2.9432 -7.9346 4.5239 46 1 -5.1552 -10.6463 2.1071 47 1 1.4143 -6.6268 0.4995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363812074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:50 Heat of formation + Delta-G solvation = -58.174636 kcal Electronic energy + Delta-G solvation = -30398.734690 eV Core-core repulsion = 26197.020925 eV Total energy + Delta-G solvation = -4201.713765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38930 -39.66267 -38.95704 -37.75519 -36.44937 -35.57731 -34.71385 -33.50966 -32.46150 -31.09510 -28.93497 -27.77797 -27.45635 -25.56382 -25.02706 -23.89493 -23.73679 -21.21709 -20.29299 -20.19112 -19.84268 -19.18793 -17.85078 -17.12100 -16.83431 -16.46755 -15.88249 -15.64899 -15.38454 -15.20407 -14.96845 -14.69977 -14.61584 -14.30169 -14.06274 -13.88225 -13.67551 -13.27766 -13.04057 -12.85711 -12.68844 -12.59177 -12.46399 -12.04815 -11.56917 -11.55407 -11.44260 -11.34894 -10.95739 -10.90916 -10.76535 -10.50992 -10.32795 -10.22926 -10.09442 -10.03651 -9.92219 -9.37332 -8.91379 -8.49995 -8.32233 -7.17090 -5.94943 -3.97442 0.69541 1.03737 1.78420 2.72125 2.77937 3.25783 3.35733 3.41671 3.46330 3.62440 3.88589 4.15003 4.16687 4.34090 4.42094 4.50370 4.56240 4.72828 4.93928 4.97265 5.00385 5.11407 5.25073 5.25863 5.36796 5.38389 5.51241 5.56065 5.64535 5.72187 5.80665 5.88246 6.07631 6.21775 6.40804 6.72405 6.87505 6.94024 7.00230 7.12505 7.37188 7.63682 7.77911 7.86522 7.93779 8.01707 8.30829 8.58313 8.65800 9.10264 9.67663 11.12207 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002630 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.442412 B =10642.362577 C =11517.136034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.092 3.908 5 N -0.547 5.547 6 C 0.563 3.437 7 N -0.796 5.796 8 C -0.418 4.418 9 C 0.430 3.570 10 O -0.488 6.488 11 C 0.031 3.969 12 N -0.674 5.674 13 C 0.212 3.788 14 H 0.035 0.965 15 C -0.170 4.170 16 C -0.493 4.493 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.275 1.275 24 C 0.510 3.490 25 O -0.427 6.427 26 N -0.645 5.645 27 C 0.679 3.321 28 O -0.530 6.530 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.405 0.595 39 H 0.439 0.561 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.330 0.670 43 H 0.089 0.911 44 H 0.006 0.994 45 H 0.027 0.973 46 H 0.259 0.741 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.113 20.068 -1.564 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.031 4.031 5 N -0.273 5.273 6 C 0.327 3.673 7 N -0.352 5.352 8 C -0.433 4.433 9 C 0.314 3.686 10 O -0.368 6.368 11 C -0.099 4.099 12 N -0.305 5.305 13 C 0.105 3.895 14 H 0.053 0.947 15 C -0.229 4.229 16 C -0.531 4.531 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.200 1.200 24 C 0.312 3.688 25 O -0.222 6.222 26 N -0.406 5.406 27 C 0.381 3.619 28 O -0.404 6.404 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.238 0.762 39 H 0.290 0.710 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.108 0.892 44 H 0.025 0.975 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 14.104 20.386 -2.200 24.887 hybrid contribution -0.547 -0.248 0.801 1.001 sum 13.557 20.138 -1.400 24.317 Atomic orbital electron populations 1.22129 0.94682 1.02288 1.02742 1.21542 0.96276 0.97245 0.98355 1.21757 1.01648 0.94223 1.02505 1.22127 1.04162 0.77632 0.99175 1.46764 1.16370 1.12257 1.51885 1.18091 0.80525 0.88677 0.80052 1.43812 1.26960 1.08902 1.55545 1.18418 1.05438 0.89572 1.29865 1.20530 0.81811 0.91410 0.74860 1.90098 1.53417 1.56953 1.36295 1.22108 0.93596 0.91913 1.02312 1.60695 1.23771 1.27312 1.18691 1.19189 0.95003 0.80778 0.94572 0.94716 1.22444 0.95423 1.05881 0.99167 1.21165 0.91060 0.93451 1.47465 0.91898 1.24944 0.98318 0.95709 0.95623 1.69881 1.34982 0.98596 1.50374 0.86512 0.85668 0.77078 0.78193 1.20817 1.21475 1.19957 1.19916 0.85449 0.84494 0.78948 1.85262 1.48133 1.14617 1.74143 1.69487 1.21316 1.12937 1.36857 1.17244 0.84065 0.81861 0.78714 1.90956 1.22402 1.77713 1.49297 0.92370 0.91230 0.92463 0.89582 0.91902 0.91706 0.92290 0.86851 0.89577 0.76156 0.71003 0.88129 0.91963 0.85254 0.89220 0.97536 0.95363 0.93126 0.72736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 7.75 37.15 0.29 -0.67 16 2 C -0.11 -0.73 3.12 -90.62 -0.28 -1.02 16 3 C -0.14 -0.64 9.19 37.16 0.34 -0.30 16 4 C 0.09 0.64 4.62 -4.04 -0.02 0.62 16 5 N -0.55 -5.63 2.47 -120.61 -0.30 -5.93 16 6 C 0.56 5.81 6.07 -153.63 -0.93 4.88 16 7 N -0.80 -6.08 7.61 31.59 0.24 -5.84 16 8 C -0.42 -5.32 5.78 -106.39 -0.61 -5.94 16 9 C 0.43 6.47 6.95 -33.06 -0.23 6.24 16 10 O -0.49 -7.76 13.49 5.44 0.07 -7.69 16 11 C 0.03 0.53 4.12 -4.97 -0.02 0.51 16 12 N -0.67 -14.38 5.86 -109.22 -0.64 -15.02 16 13 C 0.21 5.26 2.57 -68.87 -0.18 5.09 16 14 H 0.03 0.93 7.80 -51.93 -0.41 0.53 16 15 C -0.17 -4.02 8.94 37.15 0.33 -3.69 16 16 C -0.49 -13.65 8.84 -34.44 -0.30 -13.95 16 17 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 18 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 19 N -0.90 -25.53 11.32 55.43 0.63 -24.90 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.51 6.43 7.88 -15.98 -0.13 6.30 16 25 O -0.43 -4.66 9.72 -16.79 -0.16 -4.82 16 26 N -0.65 -9.05 10.34 -16.56 -0.17 -9.22 16 27 C 0.68 9.57 8.32 -88.62 -0.74 8.83 16 28 O -0.53 -8.76 16.66 5.02 0.08 -8.68 16 29 H 0.06 0.23 6.82 -51.93 -0.35 -0.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 6.06 -51.93 -0.31 0.14 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.11 0.87 7.36 -51.93 -0.38 0.49 16 37 H 0.09 0.35 6.49 -51.93 -0.34 0.01 16 38 H 0.40 1.84 4.64 -40.82 -0.19 1.65 16 39 H 0.44 4.09 5.39 -40.94 -0.22 3.87 16 40 H 0.10 1.76 7.55 -51.93 -0.39 1.37 16 41 H 0.06 1.04 6.19 -51.93 -0.32 0.72 16 42 H 0.33 6.95 8.17 -39.29 -0.32 6.63 16 43 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 44 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 45 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.41 2.82 8.98 45.56 0.41 3.23 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -34.37 371.73 -7.85 -42.22 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.61 Total: 9.43 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -2.58 Total: 8.32 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.24 Total: -60.91 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.01 Total: -21.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.37 -7.85 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363812074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.953 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds