Wall clock time and date at job start Tue Mar 31 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.45719 * 2 1 4 4 C 1.53037 * 109.45815 * 240.02651 * 2 1 3 5 5 C 1.53190 * 109.31419 * 178.61460 * 4 2 1 6 6 N 1.46930 * 108.89376 * 54.56403 * 5 4 2 7 7 C 1.34771 * 120.63179 * 126.46639 * 6 5 4 8 8 O 1.21283 * 120.00172 * 185.13991 * 7 6 5 9 9 C 1.50702 * 119.99768 * 5.13317 * 7 6 5 10 10 C 1.53007 * 109.46742 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.53407 * 54.30068 * 10 9 7 12 12 N 1.47304 * 110.59975 * 291.46966 * 10 9 7 13 13 C 1.34865 * 106.43944 * 241.52352 * 12 10 9 14 14 O 1.21542 * 123.72657 * 179.97438 * 13 12 10 15 15 N 1.33791 * 112.50154 * 359.86483 * 13 12 10 16 16 C 1.34762 * 111.64151 * 0.08813 * 15 13 12 17 17 O 1.21241 * 127.15625 * 179.97438 * 16 15 13 18 18 C 1.46968 * 118.71048 * 306.64373 * 6 5 4 19 19 H 1.08989 * 109.46763 * 293.57117 * 18 6 5 20 20 C 1.53002 * 109.70424 * 173.28369 * 18 6 5 21 21 N 1.46499 * 109.46623 * 179.45744 * 20 18 6 22 22 C 1.36946 * 119.99874 * 174.62160 * 21 20 18 23 23 H 1.07994 * 119.99821 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99862 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99820 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99859 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46897 * 90.00255 * 26 24 22 28 28 H 1.48494 * 109.46995 * 210.00159 * 26 24 22 29 29 H 1.48505 * 109.47224 * 330.00335 * 26 24 22 30 30 C 1.53045 * 109.45793 * 119.96065 * 2 1 3 31 31 H 1.09003 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46794 * 299.97108 * 1 2 3 33 33 H 1.08999 * 109.47326 * 59.97109 * 1 2 3 34 34 H 1.09004 * 109.49824 * 58.66556 * 4 2 1 35 35 H 1.08997 * 109.49998 * 298.56410 * 4 2 1 36 36 H 1.09001 * 109.59130 * 174.42549 * 5 4 2 37 37 H 1.09007 * 109.58873 * 294.70798 * 5 4 2 38 38 H 1.08999 * 109.47440 * 299.99929 * 9 7 6 39 39 H 1.08993 * 109.47346 * 60.00827 * 9 7 6 40 40 H 0.97008 * 126.68911 * 61.44406 * 12 10 9 41 41 H 0.96996 * 124.17834 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47661 * 299.45373 * 20 18 6 43 43 H 1.09002 * 109.47354 * 59.45789 * 20 18 6 44 44 H 0.96996 * 120.00318 * 354.61289 * 21 20 18 45 45 H 0.97006 * 119.99910 * 180.02562 * 25 24 22 46 46 H 1.08990 * 109.49641 * 301.33687 * 30 2 1 47 47 H 1.08997 * 109.49643 * 61.43398 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0707 -1.2469 -0.0001 7 6 4.9665 -2.2538 -0.0004 8 8 5.3008 -2.7684 1.0458 9 6 5.5528 -2.7403 -1.3006 10 6 6.5339 -3.8810 -1.0224 11 1 6.0512 -4.6676 -0.4425 12 7 7.7277 -3.3783 -0.3210 13 6 8.7782 -3.6265 -1.1295 14 8 9.9256 -3.3357 -0.8536 15 7 8.4170 -4.2302 -2.2676 16 6 7.0865 -4.4374 -2.3197 17 8 6.4613 -4.9597 -3.2176 18 6 3.5714 -0.6884 1.2643 19 1 3.9143 0.3410 1.3672 20 6 4.0911 -1.5219 2.4373 21 7 3.6010 -0.9533 3.6954 22 6 3.8468 -1.5964 4.8792 23 1 4.4015 -2.5230 4.8853 24 6 3.3828 -1.0573 6.0713 25 7 2.7064 0.0717 6.0637 26 14 3.7174 -1.9349 7.6860 27 1 5.0011 -1.4517 8.2552 28 1 2.6153 -1.6527 8.6403 29 1 3.8019 -3.3980 7.4459 30 6 2.0399 -0.7207 1.2502 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8897 34 1 1.6572 -0.2209 -2.1398 35 1 1.6978 -1.7558 -1.2381 36 1 3.9417 -1.2848 -2.0983 37 1 3.9143 0.3405 -1.3700 38 1 4.7528 -3.0994 -1.9481 39 1 6.0776 -1.9210 -1.7917 40 1 7.7516 -2.9520 0.5501 41 1 9.0363 -4.4862 -2.9689 42 1 3.7360 -2.5478 2.3397 43 1 5.1811 -1.5130 2.4348 44 1 3.1026 -0.1212 3.6899 45 1 2.3825 0.4486 6.8968 46 1 1.6572 -0.2206 2.1398 47 1 1.6978 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479563786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:28 Heat of formation + Delta-G solvation = -59.483064 kcal Electronic energy + Delta-G solvation = -30552.503206 eV Core-core repulsion = 26350.732703 eV Total energy + Delta-G solvation = -4201.770503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66493 -40.54356 -38.92524 -37.86720 -36.45287 -34.94891 -34.23079 -34.01888 -32.23541 -30.93104 -29.82994 -28.28980 -26.08122 -25.41767 -23.56215 -23.17474 -22.86776 -21.96220 -20.95626 -20.34969 -19.17341 -18.60780 -17.43165 -17.10402 -16.93237 -16.71739 -16.15567 -15.95005 -15.64092 -15.39866 -14.73170 -14.62457 -14.49941 -14.39027 -14.21542 -13.69228 -13.55801 -13.37300 -13.20751 -13.00469 -12.86533 -12.45230 -12.05624 -11.90369 -11.84495 -11.55128 -11.35759 -11.06837 -10.95964 -10.79866 -10.73509 -10.71795 -10.62659 -10.45565 -10.27847 -10.00608 -9.75142 -9.68706 -9.00096 -8.85229 -8.45003 -6.80027 -5.69647 -2.96170 1.19639 2.11857 2.54259 2.68668 2.74518 2.98476 3.48787 3.54036 3.55758 3.62908 4.11250 4.35656 4.52028 4.57480 4.68224 4.74105 4.82275 4.96152 5.06750 5.09851 5.19802 5.24164 5.30864 5.50815 5.56720 5.64147 5.65384 5.66165 5.72928 5.81461 5.86953 5.99345 6.12363 6.17633 6.24084 6.27942 6.53323 6.54740 6.64564 6.68581 7.01418 7.04356 7.18946 7.40541 7.80583 7.87791 8.14922 8.51069 9.60960 10.19489 10.53795 11.53806 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009227 B = 0.003649 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.950365 B = 7670.909997 C =10183.263309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.601 5.601 7 C 0.511 3.489 8 O -0.514 6.514 9 C -0.145 4.145 10 C 0.108 3.892 11 H 0.140 0.860 12 N -0.709 5.709 13 C 0.700 3.300 14 O -0.544 6.544 15 N -0.679 5.679 16 C 0.531 3.469 17 O -0.467 6.467 18 C 0.139 3.861 19 H 0.071 0.929 20 C 0.166 3.834 21 N -0.738 5.738 22 C -0.226 4.226 23 H 0.070 0.930 24 C -0.017 4.017 25 N -0.938 5.938 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 C -0.119 4.119 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.450 0.550 41 H 0.432 0.568 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.378 0.622 45 H 0.253 0.747 46 H 0.087 0.913 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -3.096 -23.077 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.335 5.335 7 C 0.298 3.702 8 O -0.390 6.390 9 C -0.186 4.186 10 C -0.002 4.002 11 H 0.158 0.842 12 N -0.375 5.375 13 C 0.399 3.601 14 O -0.418 6.418 15 N -0.351 5.351 16 C 0.316 3.684 17 O -0.336 6.336 18 C 0.036 3.964 19 H 0.089 0.911 20 C 0.039 3.961 21 N -0.384 5.384 22 C -0.357 4.357 23 H 0.088 0.912 24 C -0.213 4.213 25 N -0.587 5.587 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 C -0.158 4.158 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.297 0.703 41 H 0.275 0.725 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.212 0.788 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.423 -3.620 -22.676 23.091 hybrid contribution 0.118 0.008 0.875 0.883 sum 2.541 -3.612 -21.801 22.244 Atomic orbital electron populations 1.21802 0.95063 1.01790 1.01605 1.21167 0.95829 0.99530 0.94788 0.91180 1.21983 0.94509 1.01675 0.98561 1.21769 0.94910 0.99467 0.85602 1.48132 1.42616 1.35276 1.07516 1.20184 0.79640 0.80131 0.90293 1.90871 1.60650 1.55651 1.31810 1.21977 0.99611 0.98456 0.98537 1.21788 0.88413 0.98456 0.91517 0.84236 1.45767 1.05142 1.64252 1.22359 1.16012 0.85433 0.78389 0.80252 1.91069 1.18090 1.56950 1.75642 1.44311 1.11206 1.57897 1.21645 1.20772 0.82233 0.77397 0.87978 1.90859 1.64161 1.40190 1.38393 1.21660 0.93884 0.97898 0.82943 0.91108 1.21242 0.97168 0.94373 0.83309 1.42560 1.66712 1.27767 1.01325 1.19212 1.28004 1.03991 0.84540 0.91216 1.24692 1.01286 0.97696 0.97584 1.69652 1.42759 1.20426 1.25912 0.86209 0.77200 0.78902 0.84054 1.21844 1.21916 1.20836 1.21994 0.94499 1.01411 0.97855 0.92793 0.92251 0.93082 0.90890 0.91375 0.90004 0.91187 0.86424 0.87837 0.70259 0.72538 0.94637 0.94040 0.78820 0.93715 0.89482 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.09 -1.01 2.68 -90.57 -0.24 -1.25 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.06 5.36 -26.61 -0.14 -1.20 16 5 C 0.11 0.83 6.32 -3.71 -0.02 0.81 16 6 N -0.60 -6.99 2.98 -165.19 -0.49 -7.49 16 7 C 0.51 5.97 7.52 -10.99 -0.08 5.89 16 8 O -0.51 -7.93 10.51 5.55 0.06 -7.88 16 9 C -0.14 -1.07 3.86 -27.88 -0.11 -1.18 16 10 C 0.11 0.88 3.15 -68.21 -0.21 0.66 16 11 H 0.14 1.14 7.96 -51.93 -0.41 0.73 16 12 N -0.71 -6.80 5.94 -59.10 -0.35 -7.15 16 13 C 0.70 7.30 9.00 -87.72 -0.79 6.51 16 14 O -0.54 -7.76 18.04 5.33 0.10 -7.67 16 15 N -0.68 -5.18 5.70 -15.71 -0.09 -5.27 16 16 C 0.53 4.31 8.14 -10.56 -0.09 4.23 16 17 O -0.47 -4.80 18.02 5.59 0.10 -4.70 16 18 C 0.14 2.14 3.02 -67.58 -0.20 1.94 16 19 H 0.07 1.13 8.14 -51.94 -0.42 0.71 16 20 C 0.17 3.40 4.11 -4.04 -0.02 3.39 16 21 N -0.74 -18.66 5.28 -59.91 -0.32 -18.97 16 22 C -0.23 -6.44 9.99 -15.05 -0.15 -6.59 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 25 N -0.94 -28.38 13.06 55.49 0.72 -27.66 16 26 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 C -0.12 -1.73 4.41 -26.61 -0.12 -1.85 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.43 5.96 -51.93 -0.31 0.13 16 37 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.12 0.67 7.48 -51.93 -0.39 0.28 16 39 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 40 H 0.45 4.80 8.29 -40.82 -0.34 4.46 16 41 H 0.43 2.39 8.96 -40.82 -0.37 2.02 16 42 H 0.04 0.79 7.09 -51.93 -0.37 0.43 16 43 H 0.04 0.92 6.40 -51.93 -0.33 0.59 16 44 H 0.38 9.87 6.81 -40.82 -0.28 9.59 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 1.50 7.22 -51.93 -0.37 1.12 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -35.20 376.38 -8.49 -43.69 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.94 Total: 9.94 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.93 Total: 9.62 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.52 Total: -66.54 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.26 Total: -20.24 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.20 -8.49 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479563786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.789 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds