Wall clock time and date at job start Tue Mar 31 2020 21:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.45719 * 2 1 4 4 C 1.53037 * 109.45815 * 240.02651 * 2 1 3 5 5 C 1.53190 * 109.31419 * 178.61460 * 4 2 1 6 6 N 1.46930 * 108.89376 * 54.56403 * 5 4 2 7 7 C 1.34771 * 120.63179 * 126.46639 * 6 5 4 8 8 O 1.21283 * 120.00172 * 185.13991 * 7 6 5 9 9 C 1.50702 * 119.99768 * 5.13317 * 7 6 5 10 10 C 1.53007 * 109.46742 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.53407 * 54.30068 * 10 9 7 12 12 N 1.47304 * 110.59975 * 291.46966 * 10 9 7 13 13 C 1.34865 * 106.43944 * 241.52352 * 12 10 9 14 14 O 1.21542 * 123.72657 * 179.97438 * 13 12 10 15 15 N 1.33791 * 112.50154 * 359.86483 * 13 12 10 16 16 C 1.34762 * 111.64151 * 0.08813 * 15 13 12 17 17 O 1.21241 * 127.15625 * 179.97438 * 16 15 13 18 18 C 1.46968 * 118.71048 * 306.64373 * 6 5 4 19 19 H 1.08989 * 109.46763 * 293.57117 * 18 6 5 20 20 C 1.53002 * 109.70424 * 173.28369 * 18 6 5 21 21 N 1.46499 * 109.46623 * 179.45744 * 20 18 6 22 22 C 1.36946 * 119.99874 * 174.62160 * 21 20 18 23 23 H 1.07994 * 119.99821 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99862 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99820 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99859 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46897 * 90.00255 * 26 24 22 28 28 H 1.48494 * 109.46995 * 210.00159 * 26 24 22 29 29 H 1.48505 * 109.47224 * 330.00335 * 26 24 22 30 30 C 1.53045 * 109.45793 * 119.96065 * 2 1 3 31 31 H 1.09003 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46794 * 299.97108 * 1 2 3 33 33 H 1.08999 * 109.47326 * 59.97109 * 1 2 3 34 34 H 1.09004 * 109.49824 * 58.66556 * 4 2 1 35 35 H 1.08997 * 109.49998 * 298.56410 * 4 2 1 36 36 H 1.09001 * 109.59130 * 174.42549 * 5 4 2 37 37 H 1.09007 * 109.58873 * 294.70798 * 5 4 2 38 38 H 1.08999 * 109.47440 * 299.99929 * 9 7 6 39 39 H 1.08993 * 109.47346 * 60.00827 * 9 7 6 40 40 H 0.97008 * 126.68911 * 61.44406 * 12 10 9 41 41 H 0.96996 * 124.17834 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47661 * 299.45373 * 20 18 6 43 43 H 1.09002 * 109.47354 * 59.45789 * 20 18 6 44 44 H 0.96996 * 120.00318 * 354.61289 * 21 20 18 45 45 H 0.97006 * 119.99910 * 180.02562 * 25 24 22 46 46 H 1.08990 * 109.49641 * 301.33687 * 30 2 1 47 47 H 1.08997 * 109.49643 * 61.43398 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0707 -1.2469 -0.0001 7 6 4.9665 -2.2538 -0.0004 8 8 5.3008 -2.7684 1.0458 9 6 5.5528 -2.7403 -1.3006 10 6 6.5339 -3.8810 -1.0224 11 1 6.0512 -4.6676 -0.4425 12 7 7.7277 -3.3783 -0.3210 13 6 8.7782 -3.6265 -1.1295 14 8 9.9256 -3.3357 -0.8536 15 7 8.4170 -4.2302 -2.2676 16 6 7.0865 -4.4374 -2.3197 17 8 6.4613 -4.9597 -3.2176 18 6 3.5714 -0.6884 1.2643 19 1 3.9143 0.3410 1.3672 20 6 4.0911 -1.5219 2.4373 21 7 3.6010 -0.9533 3.6954 22 6 3.8468 -1.5964 4.8792 23 1 4.4015 -2.5230 4.8853 24 6 3.3828 -1.0573 6.0713 25 7 2.7064 0.0717 6.0637 26 14 3.7174 -1.9349 7.6860 27 1 5.0011 -1.4517 8.2552 28 1 2.6153 -1.6527 8.6403 29 1 3.8019 -3.3980 7.4459 30 6 2.0399 -0.7207 1.2502 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8897 34 1 1.6572 -0.2209 -2.1398 35 1 1.6978 -1.7558 -1.2381 36 1 3.9417 -1.2848 -2.0983 37 1 3.9143 0.3405 -1.3700 38 1 4.7528 -3.0994 -1.9481 39 1 6.0776 -1.9210 -1.7917 40 1 7.7516 -2.9520 0.5501 41 1 9.0363 -4.4862 -2.9689 42 1 3.7360 -2.5478 2.3397 43 1 5.1811 -1.5130 2.4348 44 1 3.1026 -0.1212 3.6899 45 1 2.3825 0.4486 6.8968 46 1 1.6572 -0.2206 2.1398 47 1 1.6978 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479563786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:27 Heat of formation + Delta-G solvation = -87.912217 kcal Electronic energy + Delta-G solvation = -30553.735986 eV Core-core repulsion = 26350.732703 eV Total energy + Delta-G solvation = -4203.003283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.42795 -41.54380 -39.73862 -38.82761 -37.33162 -36.63995 -35.09228 -34.94344 -33.87943 -31.97779 -31.22839 -29.24865 -27.23601 -26.76449 -24.85637 -24.23765 -23.75922 -22.95620 -22.10094 -21.29494 -20.14931 -19.40446 -19.07833 -18.21893 -17.74219 -17.65406 -17.04168 -16.85741 -16.71250 -16.47245 -16.19400 -15.58394 -15.43724 -15.38422 -15.28751 -15.08944 -14.76600 -14.43730 -14.36990 -14.18152 -13.88500 -13.69595 -13.20699 -12.91697 -12.84972 -12.80547 -12.70335 -12.50441 -12.22660 -12.17246 -12.00348 -11.96115 -11.76622 -11.51575 -11.44292 -11.35260 -11.19295 -10.94775 -10.54706 -10.18057 -9.55615 -8.90991 -7.94278 -5.21043 0.47059 1.38849 1.45327 1.47083 1.55619 1.64826 1.84784 1.93649 2.17519 2.57438 2.90341 3.39328 3.42137 3.57260 3.80808 3.85006 3.87502 3.97891 4.14025 4.17547 4.29924 4.34498 4.42603 4.46546 4.59518 4.62600 4.70984 4.74472 4.84914 4.92842 4.97295 5.05849 5.11947 5.16877 5.22504 5.31471 5.36452 5.43086 5.49526 5.57424 5.70356 5.72593 5.87316 6.28690 6.32458 6.50190 7.07300 7.21878 7.35187 8.12081 8.36388 9.29373 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009227 B = 0.003649 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.950365 B = 7670.909997 C =10183.263309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.124 4.124 5 C 0.099 3.901 6 N -0.601 5.601 7 C 0.505 3.495 8 O -0.560 6.560 9 C -0.130 4.130 10 C 0.108 3.892 11 H 0.140 0.860 12 N -0.708 5.708 13 C 0.705 3.295 14 O -0.585 6.585 15 N -0.664 5.664 16 C 0.548 3.452 17 O -0.480 6.480 18 C 0.150 3.850 19 H 0.066 0.934 20 C 0.177 3.823 21 N -0.747 5.747 22 C -0.237 4.237 23 H 0.065 0.935 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.274 1.274 30 C -0.111 4.111 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.129 0.871 40 H 0.445 0.555 41 H 0.443 0.557 42 H 0.016 0.984 43 H 0.027 0.973 44 H 0.371 0.629 45 H 0.251 0.749 46 H 0.049 0.951 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 -3.328 -26.048 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.334 5.334 7 C 0.294 3.706 8 O -0.439 6.439 9 C -0.171 4.171 10 C -0.002 4.002 11 H 0.158 0.842 12 N -0.373 5.373 13 C 0.404 3.596 14 O -0.462 6.462 15 N -0.336 5.336 16 C 0.334 3.666 17 O -0.350 6.350 18 C 0.046 3.954 19 H 0.084 0.916 20 C 0.051 3.949 21 N -0.391 5.391 22 C -0.369 4.369 23 H 0.083 0.917 24 C -0.265 4.265 25 N -0.619 5.619 26 Si 0.798 3.202 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.199 1.199 30 C -0.149 4.149 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.166 0.834 39 H 0.147 0.853 40 H 0.291 0.709 41 H 0.288 0.712 42 H 0.034 0.966 43 H 0.045 0.955 44 H 0.203 0.797 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.221 -3.873 -25.732 26.117 hybrid contribution 0.168 0.048 1.778 1.787 sum 2.389 -3.824 -23.954 24.375 Atomic orbital electron populations 1.21786 0.94586 1.01711 1.01987 1.21145 0.96222 0.99501 0.93989 0.90734 1.21978 0.94687 1.01442 0.98038 1.22151 0.94704 1.00918 0.84396 1.48196 1.42538 1.35290 1.07351 1.20941 0.78964 0.79354 0.91378 1.90854 1.61964 1.57088 1.33973 1.21959 1.00159 0.98808 0.96145 1.21875 0.88004 0.98908 0.91382 0.84242 1.45817 1.05638 1.63723 1.22106 1.16034 0.84838 0.78054 0.80680 1.91045 1.19790 1.58756 1.76612 1.44107 1.11377 1.57059 1.21036 1.20508 0.81969 0.76785 0.87386 1.90873 1.64336 1.40923 1.38907 1.21213 0.94355 0.96601 0.83253 0.91599 1.21157 0.96066 0.93997 0.83663 1.42755 1.66582 1.27455 1.02339 1.19499 1.27491 1.03896 0.86040 0.91738 1.25465 1.01615 0.98635 1.00757 1.69796 1.43877 1.21767 1.26459 0.85201 0.76898 0.78162 0.79899 1.21435 1.21776 1.19939 1.21848 0.93791 1.00481 0.98798 0.93116 0.94059 0.90503 0.87603 0.91676 0.86199 0.89769 0.83364 0.85321 0.70929 0.71225 0.96593 0.95481 0.79655 0.94007 0.93186 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.09 -1.78 2.68 -10.76 -0.03 -1.81 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.12 -1.56 5.36 30.67 0.16 -1.39 16 5 C 0.10 1.15 6.32 86.36 0.55 1.70 16 6 N -0.60 -12.95 2.98 -794.92 -2.37 -15.32 16 7 C 0.50 11.05 7.52 87.66 0.66 11.71 16 8 O -0.56 -17.54 10.51 -3.04 -0.03 -17.57 16 9 C -0.13 -1.48 3.86 29.85 0.12 -1.37 16 10 C 0.11 1.52 3.15 44.38 0.14 1.66 16 11 H 0.14 2.08 7.96 -2.39 -0.02 2.06 16 12 N -0.71 -12.96 5.94 -459.13 -2.73 -15.68 16 13 C 0.70 13.95 9.00 179.33 1.61 15.57 16 14 O -0.59 -16.59 18.04 -3.85 -0.07 -16.65 16 15 N -0.66 -8.79 5.70 -440.86 -2.51 -11.31 16 16 C 0.55 7.42 8.14 87.94 0.72 8.13 16 17 O -0.48 -8.38 18.02 -2.91 -0.05 -8.43 16 18 C 0.15 4.70 3.02 44.97 0.14 4.84 16 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 20 C 0.18 7.62 4.11 86.38 0.35 7.97 16 21 N -0.75 -39.59 5.28 -343.44 -1.81 -41.41 16 22 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 23 H 0.06 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 25 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 26 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 30 C -0.11 -3.31 4.41 30.67 0.14 -3.17 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 0.55 5.96 -2.39 -0.01 0.53 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.15 0.90 7.48 -2.39 -0.02 0.88 16 39 H 0.13 0.93 8.11 -2.39 -0.02 0.91 16 40 H 0.44 9.54 8.29 -92.70 -0.77 8.77 16 41 H 0.44 4.00 8.96 -92.71 -0.83 3.17 16 42 H 0.02 0.75 7.09 -2.39 -0.02 0.74 16 43 H 0.03 1.27 6.40 -2.39 -0.02 1.25 16 44 H 0.37 20.42 6.81 -92.71 -0.63 19.79 16 45 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 46 H 0.05 1.84 7.22 -2.39 -0.02 1.83 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -80.22 376.38 -1.95 -82.17 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.20 Total: 29.32 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 6.52 Total: 24.83 kcal Atomic # 7 Polarization: -134.42 SS G_CDS: -9.14 Total: -143.56 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.15 Total: -42.65 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -80.22 -1.95 -82.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479563786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.743 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds