Wall clock time and date at job start Tue Mar 31 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.99683 * 2 1 4 4 C 1.54329 * 109.88061 * 238.91108 * 2 1 3 5 5 H 1.09001 * 110.72305 * 336.92800 * 4 2 1 6 6 N 1.46498 * 110.71932 * 100.02497 * 4 2 1 7 7 C 1.34777 * 119.99828 * 202.27995 * 6 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 4 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 4 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47353 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47654 * 180.02562 * 11 10 9 13 13 C 1.34772 * 124.17639 * 269.72750 * 12 11 10 14 14 O 1.21229 * 127.15900 * 0.02562 * 13 12 11 15 15 C 1.51585 * 105.68376 * 179.91875 * 13 12 11 16 16 N 1.47312 * 103.59124 * 0.32451 * 15 13 12 17 17 C 1.33784 * 124.17777 * 90.02433 * 12 11 10 18 18 O 1.21541 * 123.77331 * 359.96617 * 17 12 11 19 19 C 1.55161 * 103.10041 * 218.48031 * 4 2 1 20 20 C 1.54907 * 101.58168 * 35.41251 * 19 4 2 21 21 N 1.47312 * 110.06518 * 121.18140 * 2 1 3 22 22 C 1.36947 * 125.61206 * 298.31688 * 21 2 1 23 23 H 1.08005 * 119.99950 * 359.80238 * 22 21 2 24 24 C 1.38807 * 119.99972 * 179.79952 * 22 21 2 25 25 N 1.31628 * 120.00160 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00071 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46737 * 89.99970 * 26 24 22 28 28 H 1.48494 * 109.47173 * 209.99888 * 26 24 22 29 29 H 1.48494 * 109.46876 * 330.00150 * 26 24 22 30 30 H 1.08994 * 109.46947 * 181.09248 * 1 2 3 31 31 H 1.08999 * 109.46515 * 301.09044 * 1 2 3 32 32 H 1.09002 * 109.47096 * 61.08736 * 1 2 3 33 33 H 0.97001 * 120.00384 * 22.56442 * 6 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 35 35 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 36 36 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 37 37 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 38 38 H 1.08999 * 109.47616 * 300.00389 * 11 10 9 39 39 H 1.09003 * 109.47280 * 60.00024 * 11 10 9 40 40 H 1.08998 * 110.76990 * 241.71516 * 15 13 12 41 41 H 1.09002 * 110.56197 * 118.82938 * 15 13 12 42 42 H 0.97003 * 126.68639 * 179.83715 * 16 15 13 43 43 H 1.08995 * 111.00154 * 153.48636 * 19 4 2 44 44 H 1.09003 * 110.99787 * 277.33768 * 19 4 2 45 45 H 1.08998 * 110.36729 * 81.82977 * 20 19 4 46 46 H 1.09001 * 110.36692 * 204.04821 * 20 19 4 47 47 H 0.96995 * 120.00113 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2429 5 1 1.3040 -1.4435 -1.6203 6 7 2.4554 0.1963 -2.2875 7 6 2.5108 -0.2037 -3.5734 8 8 2.2242 -1.3452 -3.8663 9 6 2.9289 0.7673 -4.6473 10 6 2.9073 0.0651 -6.0064 11 6 3.3311 1.0512 -7.0967 12 7 3.3098 0.3790 -8.3983 13 6 4.3642 -0.2672 -8.9340 14 8 5.4672 -0.3974 -8.4481 15 6 3.8832 -0.7997 -10.2692 16 7 2.4846 -0.3426 -10.3408 17 6 2.2429 0.3357 -9.2044 18 8 1.1747 0.8514 -8.9396 19 6 3.2870 -1.5177 -0.6960 20 6 2.8161 -1.8832 0.7338 21 7 2.0355 -0.7164 1.1838 22 6 1.8130 -0.3595 2.4871 23 1 1.2244 0.5172 2.7140 24 6 2.3439 -1.1245 3.5165 25 7 3.0617 -2.1927 3.2400 26 14 2.0399 -0.6381 5.2943 27 1 0.7992 -1.2929 5.7813 28 1 3.1888 -1.0712 6.1294 29 1 1.8899 0.8365 5.3852 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3632 0.5307 0.8801 32 1 -0.3633 0.4969 -0.8996 33 1 2.6847 1.1093 -2.0534 34 1 2.2385 1.6106 -4.6634 35 1 3.9368 1.1269 -4.4397 36 1 3.5974 -0.7784 -5.9906 37 1 1.8991 -0.2940 -6.2138 38 1 2.6407 1.8945 -7.1125 39 1 4.3390 1.4108 -6.8896 40 1 3.9325 -1.8883 -10.2917 41 1 4.4680 -0.3736 -11.0844 42 1 1.8597 -0.5003 -11.0657 43 1 3.4810 -2.4144 -1.2846 44 1 4.1664 -0.8744 -0.6653 45 1 2.1880 -2.7737 0.7103 46 1 3.6743 -2.0422 1.3868 47 1 3.4330 -2.7270 3.9593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479727641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:48 Heat of formation + Delta-G solvation = -55.786712 kcal Electronic energy + Delta-G solvation = -29047.072495 eV Core-core repulsion = 24845.462278 eV Total energy + Delta-G solvation = -4201.610217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.72252 -39.72483 -38.97533 -37.63449 -36.50631 -36.00872 -33.98554 -33.10005 -31.95832 -30.36470 -28.94694 -28.31573 -27.42917 -24.76803 -23.98565 -23.34386 -22.80614 -20.75152 -20.47651 -20.11062 -19.50637 -18.48514 -17.51891 -17.25475 -16.84301 -16.69228 -16.05419 -15.81932 -15.65316 -15.56555 -14.73973 -14.62000 -14.48094 -14.18388 -14.11273 -13.91598 -13.72406 -13.37603 -12.87780 -12.65931 -12.39512 -12.12391 -12.04715 -11.86353 -11.56171 -11.32754 -11.13549 -11.07595 -10.86348 -10.82576 -10.67561 -10.52782 -10.40387 -10.22799 -10.09198 -9.98446 -9.75982 -9.64268 -9.50844 -8.67710 -8.58239 -6.87508 -5.65342 -3.08317 1.19087 1.74964 2.56943 2.66753 2.82246 3.36471 3.39751 3.44929 3.46528 3.53505 4.28596 4.45818 4.47336 4.58883 4.60450 4.66196 4.93279 5.01899 5.09482 5.20016 5.28072 5.33095 5.42488 5.47534 5.55728 5.64559 5.80202 5.84139 6.01985 6.12978 6.25899 6.26456 6.32383 6.37096 6.55512 6.59530 6.62121 6.72933 6.87960 6.92354 7.12677 7.52421 7.62188 7.67235 7.76102 7.85561 8.34530 8.44998 9.20589 9.81317 10.45428 11.37928 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.001859 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.531945 B =15054.892843 C =15492.728248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.091 0.909 6 N -0.716 5.716 7 C 0.512 3.488 8 O -0.544 6.544 9 C -0.137 4.137 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.575 5.575 13 C 0.519 3.481 14 O -0.465 6.465 15 C 0.062 3.938 16 N -0.731 5.731 17 C 0.701 3.299 18 O -0.539 6.539 19 C -0.152 4.152 20 C 0.153 3.847 21 N -0.596 5.596 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.398 0.602 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.441 0.559 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.014 0.986 46 H 0.109 0.891 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 6.670 -28.512 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.109 0.891 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.422 6.422 9 C -0.178 4.178 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.321 5.321 13 C 0.306 3.694 14 O -0.334 6.334 15 C -0.066 4.066 16 N -0.396 5.396 17 C 0.401 3.599 18 O -0.412 6.412 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.321 5.321 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.207 4.207 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.286 0.714 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.032 0.968 46 H 0.127 0.873 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.407 6.028 -27.967 28.711 hybrid contribution -0.394 0.495 0.726 0.963 sum 2.013 6.523 -27.241 28.084 Atomic orbital electron populations 1.22231 0.97879 1.01437 0.99909 1.21053 0.92545 0.94790 0.86959 0.94601 1.22144 0.97593 0.90846 0.86432 0.89091 1.46089 1.68825 1.15061 1.06689 1.20475 0.77507 0.88825 0.83454 1.90702 1.49039 1.20142 1.82269 1.21540 1.03930 0.98924 0.93393 1.21647 1.03975 0.98312 0.91910 1.21780 1.04289 0.95602 0.78598 1.46374 1.13299 1.51978 1.20490 1.20913 0.84157 0.77304 0.86995 1.90854 1.19862 1.55661 1.67036 1.22478 0.83501 1.03355 0.97239 1.45434 1.14267 1.58368 1.21514 1.15891 0.83627 0.79620 0.80768 1.91044 1.24035 1.49960 1.76132 1.23386 0.96772 0.99306 0.99748 1.21943 0.97410 0.88325 0.89542 1.44570 1.59272 1.28172 1.00069 1.19025 1.27201 1.08037 0.80520 0.90466 1.24800 1.00429 0.97408 0.98073 1.69800 1.39167 1.17772 1.30197 0.86075 0.77234 0.77696 0.84492 1.21665 1.21683 1.20725 0.92949 0.92731 0.94295 0.76785 0.88514 0.88526 0.90478 0.90268 0.88319 0.88469 0.85761 0.85892 0.71418 0.92074 0.92027 0.96843 0.87326 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.15 37.16 0.34 -2.56 16 2 C 0.15 3.10 3.49 -66.79 -0.23 2.87 16 3 H 0.04 0.70 7.70 -51.93 -0.40 0.30 16 4 C 0.13 2.46 2.79 -66.09 -0.18 2.28 16 5 H 0.09 1.82 7.33 -51.93 -0.38 1.44 16 6 N -0.72 -10.26 5.19 -52.03 -0.27 -10.53 16 7 C 0.51 7.30 7.83 -10.98 -0.09 7.21 16 8 O -0.54 -10.08 15.67 5.55 0.09 -10.00 16 9 C -0.14 -1.27 5.70 -27.89 -0.16 -1.43 16 10 C -0.12 -1.20 4.83 -26.74 -0.13 -1.33 16 11 C 0.12 0.92 5.70 -4.04 -0.02 0.90 16 12 N -0.58 -4.70 2.60 -120.73 -0.31 -5.02 16 13 C 0.52 3.83 8.32 -10.55 -0.09 3.75 16 14 O -0.46 -4.90 17.75 5.60 0.10 -4.80 16 15 C 0.06 0.18 7.97 -4.31 -0.03 0.15 16 16 N -0.73 -3.22 6.58 -65.74 -0.43 -3.66 16 17 C 0.70 6.10 8.62 -88.02 -0.76 5.34 16 18 O -0.54 -6.74 17.48 5.33 0.09 -6.65 16 19 C -0.15 -3.06 6.77 -24.58 -0.17 -3.23 16 20 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 21 N -0.60 -14.87 3.14 -162.35 -0.51 -15.38 16 22 C -0.22 -5.97 9.91 -15.06 -0.15 -6.12 16 23 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 24 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 25 N -0.92 -26.75 10.09 55.49 0.56 -26.19 16 26 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.06 -51.93 -0.42 0.63 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.60 8.34 -40.82 -0.34 4.26 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.08 0.96 8.10 -51.92 -0.42 0.54 16 38 H 0.10 0.70 7.86 -51.93 -0.41 0.30 16 39 H 0.10 0.64 8.00 -51.93 -0.42 0.23 16 40 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.12 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.44 0.92 8.96 -40.82 -0.37 0.56 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 2.98 5.88 -51.93 -0.31 2.68 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -36.82 389.58 -8.85 -45.67 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.23 Total: 2.62 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -1.78 Total: 11.14 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.97 Total: -60.78 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.28 Total: -21.44 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.82 -8.85 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479727641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.114 kcal (2) G-P(sol) polarization free energy of solvation -36.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds