Wall clock time and date at job start Tue Mar 31 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.99683 * 2 1 4 4 C 1.54329 * 109.88061 * 238.91108 * 2 1 3 5 5 H 1.09001 * 110.72305 * 336.92800 * 4 2 1 6 6 N 1.46498 * 110.71932 * 100.02497 * 4 2 1 7 7 C 1.34777 * 119.99828 * 202.27995 * 6 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 4 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 4 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47353 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47654 * 180.02562 * 11 10 9 13 13 C 1.34772 * 124.17639 * 269.72750 * 12 11 10 14 14 O 1.21229 * 127.15900 * 0.02562 * 13 12 11 15 15 C 1.51585 * 105.68376 * 179.91875 * 13 12 11 16 16 N 1.47312 * 103.59124 * 0.32451 * 15 13 12 17 17 C 1.33784 * 124.17777 * 90.02433 * 12 11 10 18 18 O 1.21541 * 123.77331 * 359.96617 * 17 12 11 19 19 C 1.55161 * 103.10041 * 218.48031 * 4 2 1 20 20 C 1.54907 * 101.58168 * 35.41251 * 19 4 2 21 21 N 1.47312 * 110.06518 * 121.18140 * 2 1 3 22 22 C 1.36947 * 125.61206 * 298.31688 * 21 2 1 23 23 H 1.08005 * 119.99950 * 359.80238 * 22 21 2 24 24 C 1.38807 * 119.99972 * 179.79952 * 22 21 2 25 25 N 1.31628 * 120.00160 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00071 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46737 * 89.99970 * 26 24 22 28 28 H 1.48494 * 109.47173 * 209.99888 * 26 24 22 29 29 H 1.48494 * 109.46876 * 330.00150 * 26 24 22 30 30 H 1.08994 * 109.46947 * 181.09248 * 1 2 3 31 31 H 1.08999 * 109.46515 * 301.09044 * 1 2 3 32 32 H 1.09002 * 109.47096 * 61.08736 * 1 2 3 33 33 H 0.97001 * 120.00384 * 22.56442 * 6 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 35 35 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 36 36 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 37 37 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 38 38 H 1.08999 * 109.47616 * 300.00389 * 11 10 9 39 39 H 1.09003 * 109.47280 * 60.00024 * 11 10 9 40 40 H 1.08998 * 110.76990 * 241.71516 * 15 13 12 41 41 H 1.09002 * 110.56197 * 118.82938 * 15 13 12 42 42 H 0.97003 * 126.68639 * 179.83715 * 16 15 13 43 43 H 1.08995 * 111.00154 * 153.48636 * 19 4 2 44 44 H 1.09003 * 110.99787 * 277.33768 * 19 4 2 45 45 H 1.08998 * 110.36729 * 81.82977 * 20 19 4 46 46 H 1.09001 * 110.36692 * 204.04821 * 20 19 4 47 47 H 0.96995 * 120.00113 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2429 5 1 1.3040 -1.4435 -1.6203 6 7 2.4554 0.1963 -2.2875 7 6 2.5108 -0.2037 -3.5734 8 8 2.2242 -1.3452 -3.8663 9 6 2.9289 0.7673 -4.6473 10 6 2.9073 0.0651 -6.0064 11 6 3.3311 1.0512 -7.0967 12 7 3.3098 0.3790 -8.3983 13 6 4.3642 -0.2672 -8.9340 14 8 5.4672 -0.3974 -8.4481 15 6 3.8832 -0.7997 -10.2692 16 7 2.4846 -0.3426 -10.3408 17 6 2.2429 0.3357 -9.2044 18 8 1.1747 0.8514 -8.9396 19 6 3.2870 -1.5177 -0.6960 20 6 2.8161 -1.8832 0.7338 21 7 2.0355 -0.7164 1.1838 22 6 1.8130 -0.3595 2.4871 23 1 1.2244 0.5172 2.7140 24 6 2.3439 -1.1245 3.5165 25 7 3.0617 -2.1927 3.2400 26 14 2.0399 -0.6381 5.2943 27 1 0.7992 -1.2929 5.7813 28 1 3.1888 -1.0712 6.1294 29 1 1.8899 0.8365 5.3852 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3632 0.5307 0.8801 32 1 -0.3633 0.4969 -0.8996 33 1 2.6847 1.1093 -2.0534 34 1 2.2385 1.6106 -4.6634 35 1 3.9368 1.1269 -4.4397 36 1 3.5974 -0.7784 -5.9906 37 1 1.8991 -0.2940 -6.2138 38 1 2.6407 1.8945 -7.1125 39 1 4.3390 1.4108 -6.8896 40 1 3.9325 -1.8883 -10.2917 41 1 4.4680 -0.3736 -11.0844 42 1 1.8597 -0.5003 -11.0657 43 1 3.4810 -2.4144 -1.2846 44 1 4.1664 -0.8744 -0.6653 45 1 2.1880 -2.7737 0.7103 46 1 3.6743 -2.0422 1.3868 47 1 3.4330 -2.7270 3.9593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479727641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:47 Heat of formation + Delta-G solvation = -84.427497 kcal Electronic energy + Delta-G solvation = -29048.314453 eV Core-core repulsion = 24845.462278 eV Total energy + Delta-G solvation = -4202.852175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28435 -41.01317 -39.63809 -39.23081 -37.16807 -36.68519 -35.57164 -34.02372 -33.57786 -32.06318 -30.59539 -29.00486 -28.19633 -26.35067 -25.80304 -23.98847 -23.65232 -22.12490 -21.54502 -21.33073 -21.01244 -19.07014 -18.71822 -18.12798 -18.03248 -17.60409 -17.34886 -16.74472 -16.59589 -16.41207 -16.23475 -15.76865 -15.45306 -15.27798 -15.10792 -14.96794 -14.80032 -14.45122 -14.27530 -14.00904 -13.77134 -13.45648 -13.24710 -13.02294 -12.92315 -12.84601 -12.75098 -12.60734 -12.23201 -12.09596 -12.02762 -11.96857 -11.84945 -11.58217 -11.45283 -11.30635 -10.98830 -10.79767 -10.73120 -10.39476 -9.98774 -8.90561 -7.74869 -5.20134 0.63553 1.22003 1.47996 1.49725 1.58216 1.69212 1.93984 2.19493 2.31636 2.52759 3.08318 3.35442 3.54131 3.74464 3.76926 3.86036 3.90542 3.95633 4.14221 4.20020 4.29873 4.33552 4.44084 4.47520 4.49198 4.61256 4.63403 4.66604 4.71967 4.74752 4.80761 4.95346 5.04419 5.05361 5.13186 5.21781 5.36788 5.49576 5.58816 5.64920 5.79416 5.85709 6.05199 6.29885 6.40282 6.63003 7.10757 7.12092 7.32522 7.78418 8.42271 9.27084 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.001859 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.531945 B =15054.892843 C =15492.728248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.057 0.943 4 C 0.151 3.849 5 H 0.073 0.927 6 N -0.705 5.705 7 C 0.508 3.492 8 O -0.591 6.591 9 C -0.125 4.125 10 C -0.111 4.111 11 C 0.119 3.881 12 N -0.581 5.581 13 C 0.513 3.487 14 O -0.502 6.502 15 C 0.072 3.928 16 N -0.712 5.712 17 C 0.694 3.306 18 O -0.585 6.585 19 C -0.138 4.138 20 C 0.157 3.843 21 N -0.614 5.614 22 C -0.225 4.225 23 H 0.087 0.913 24 C -0.072 4.072 25 N -0.952 5.952 26 Si 0.980 3.020 27 H -0.291 1.291 28 H -0.296 1.296 29 H -0.266 1.266 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.416 0.584 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.454 0.546 43 H 0.061 0.939 44 H 0.072 0.928 45 H -0.019 1.019 46 H 0.078 0.922 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 8.935 -30.638 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.045 3.955 5 H 0.091 0.909 6 N -0.357 5.357 7 C 0.297 3.703 8 O -0.472 6.472 9 C -0.165 4.165 10 C -0.150 4.150 11 C -0.002 4.002 12 N -0.327 5.327 13 C 0.303 3.697 14 O -0.374 6.374 15 C -0.054 4.054 16 N -0.377 5.377 17 C 0.394 3.606 18 O -0.461 6.461 19 C -0.177 4.177 20 C 0.032 3.968 21 N -0.340 5.340 22 C -0.354 4.354 23 H 0.104 0.896 24 C -0.264 4.264 25 N -0.602 5.602 26 Si 0.808 3.192 27 H -0.218 1.218 28 H -0.223 1.223 29 H -0.190 1.190 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.301 0.699 43 H 0.079 0.921 44 H 0.090 0.910 45 H -0.001 1.001 46 H 0.096 0.904 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.631 8.336 -30.164 31.405 hybrid contribution -0.473 -0.242 1.305 1.409 sum 2.159 8.094 -28.859 30.050 Atomic orbital electron populations 1.22122 0.96633 1.00573 1.01283 1.21269 0.93405 0.95214 0.85735 0.92578 1.21671 0.95979 0.91007 0.86838 0.90853 1.45892 1.68642 1.15201 1.05955 1.21380 0.76087 0.88963 0.83911 1.90693 1.50985 1.22580 1.82910 1.21577 1.06350 0.98052 0.90553 1.21515 1.01776 0.98315 0.93439 1.21781 1.05314 0.95082 0.78058 1.46495 1.13614 1.52012 1.20557 1.21614 0.83382 0.76519 0.88234 1.90836 1.21162 1.57041 1.68330 1.22717 0.82372 1.04809 0.95497 1.45422 1.15228 1.56677 1.20358 1.16095 0.83050 0.79777 0.81676 1.91009 1.25659 1.52161 1.77298 1.23179 0.97865 0.99848 0.96843 1.21659 0.95737 0.87725 0.91710 1.44815 1.59746 1.28468 1.00927 1.19410 1.26328 1.07942 0.81708 0.89572 1.25648 1.00949 0.97780 1.02063 1.70052 1.40489 1.18928 1.30752 0.85052 0.76441 0.78072 0.79617 1.21836 1.22292 1.19016 0.94875 0.93263 0.90999 0.74638 0.85313 0.85407 0.92774 0.92899 0.87407 0.86925 0.83110 0.82194 0.69946 0.92072 0.90975 1.00060 0.90419 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.15 71.98 0.66 -4.64 16 2 C 0.15 5.85 3.49 45.29 0.16 6.01 16 3 H 0.06 2.00 7.70 -2.39 -0.02 1.98 16 4 C 0.15 5.43 2.79 46.18 0.13 5.55 16 5 H 0.07 2.94 7.33 -2.39 -0.02 2.92 16 6 N -0.71 -18.60 5.19 -436.90 -2.27 -20.87 16 7 C 0.51 13.68 7.83 87.66 0.69 14.37 16 8 O -0.59 -21.94 15.67 -3.04 -0.05 -21.99 16 9 C -0.13 -1.98 5.70 29.85 0.17 -1.81 16 10 C -0.11 -2.15 4.83 30.59 0.15 -2.00 16 11 C 0.12 1.68 5.70 86.38 0.49 2.17 16 12 N -0.58 -8.82 2.60 -773.13 -2.01 -10.84 16 13 C 0.51 6.74 8.32 87.94 0.73 7.48 16 14 O -0.50 -10.06 17.75 -2.87 -0.05 -10.11 16 15 C 0.07 0.19 7.97 85.76 0.68 0.88 16 16 N -0.71 -4.63 6.58 -480.31 -3.16 -7.80 16 17 C 0.69 11.31 8.62 179.44 1.55 12.86 16 18 O -0.58 -14.46 17.48 -3.84 -0.07 -14.53 16 19 C -0.14 -5.57 6.77 31.99 0.22 -5.35 16 20 C 0.16 8.03 5.89 86.85 0.51 8.54 16 21 N -0.61 -30.93 3.14 -667.56 -2.10 -33.02 16 22 C -0.22 -12.27 9.91 84.03 0.83 -11.44 16 23 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 24 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 25 N -0.95 -57.22 10.09 21.65 0.22 -57.00 16 26 Si 0.98 45.54 29.55 68.60 2.03 47.56 16 27 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.42 8.12 8.34 -92.71 -0.77 7.35 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 38 H 0.11 1.34 7.86 -2.39 -0.02 1.32 16 39 H 0.11 1.25 8.00 -2.39 -0.02 1.23 16 40 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.16 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.45 0.78 8.96 -92.71 -0.83 -0.05 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 45 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 46 H 0.08 4.47 5.88 -2.39 -0.01 4.46 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -84.98 389.58 -0.63 -85.60 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.60 Total: 13.99 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 7.43 Total: 29.00 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -9.32 Total: -129.53 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.17 Total: -46.63 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -84.98 -0.63 -85.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479727641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.173 kcal (2) G-P(sol) polarization free energy of solvation -84.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds