Wall clock time and date at job start Tue Mar 31 2020 22:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48508 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47141 * 119.99997 * 9 7 5 12 12 H 1.48498 * 109.47018 * 240.00044 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 14 14 C 1.53041 * 109.46103 * 60.06700 * 13 2 1 15 15 C 1.53198 * 109.31105 * 178.61709 * 14 13 2 16 16 N 1.46930 * 108.77401 * 54.63501 * 15 14 13 17 17 C 1.34773 * 120.62973 * 126.36900 * 16 15 14 18 18 O 1.21280 * 120.00527 * 180.02562 * 17 16 15 19 19 C 1.50706 * 119.99878 * 0.02562 * 17 16 15 20 20 C 1.53002 * 109.47198 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.53250 * 54.29629 * 20 19 17 22 22 N 1.47309 * 110.59799 * 291.47262 * 20 19 17 23 23 C 1.34874 * 106.43845 * 241.52041 * 22 20 19 24 24 O 1.21536 * 123.72820 * 179.97438 * 23 22 20 25 25 N 1.33787 * 112.49531 * 359.86130 * 23 22 20 26 26 C 1.34766 * 111.64803 * 0.08988 * 25 23 22 27 27 O 1.21235 * 127.15744 * 180.02562 * 26 25 23 28 28 C 1.46922 * 118.74082 * 306.38875 * 16 15 14 29 29 C 1.53041 * 109.45617 * 299.99870 * 13 2 1 30 30 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 32 32 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 34 34 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46210 * 180.02562 * 13 2 1 36 36 H 1.09002 * 109.49833 * 298.56564 * 14 13 2 37 37 H 1.08995 * 109.49768 * 58.66903 * 14 13 2 38 38 H 1.08996 * 109.58568 * 294.85041 * 15 14 13 39 39 H 1.08993 * 109.58217 * 174.41962 * 15 14 13 40 40 H 1.08997 * 109.47170 * 299.99679 * 19 17 16 41 41 H 1.09000 * 109.47161 * 60.00359 * 19 17 16 42 42 H 0.97004 * 126.69535 * 61.44230 * 22 20 19 43 43 H 0.97007 * 124.17555 * 180.02562 * 25 23 22 44 44 H 1.09004 * 109.58762 * 293.82452 * 28 16 15 45 45 H 1.08996 * 109.58918 * 173.39867 * 28 16 15 46 46 H 1.08999 * 109.50158 * 301.33593 * 29 13 2 47 47 H 1.09001 * 109.49658 * 61.40493 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 2.3867 1.6851 -4.9180 11 1 4.2219 0.2312 -5.5507 12 1 1.9472 -0.3544 -6.1537 13 6 2.0400 -0.7213 1.2492 14 6 1.5312 -2.1646 1.2481 15 6 2.0721 -2.8935 2.4823 16 7 1.7086 -2.1263 3.6816 17 6 1.0552 -2.7162 4.7021 18 8 0.7603 -2.0721 5.6865 19 6 0.6910 -4.1763 4.6201 20 6 -0.0380 -4.5928 5.8992 21 1 -0.8929 -3.9415 6.0813 22 7 0.8820 -4.5740 7.0495 23 6 0.9328 -5.8377 7.5183 24 8 1.6055 -6.1772 8.4718 25 7 0.1585 -6.6747 6.8184 26 6 -0.4788 -6.0405 5.8145 27 8 -1.2457 -6.5267 5.0112 28 6 2.0706 -0.7039 3.7470 29 6 1.5298 0.0004 2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.2571 -2.3939 -4.2397 35 1 3.1300 -0.7208 1.2493 36 1 0.4414 -2.1662 1.2732 37 1 1.8756 -2.6711 0.3466 38 1 3.1570 -2.9722 2.4138 39 1 1.6341 -3.8899 2.5393 40 1 0.0407 -4.3408 3.7609 41 1 1.5975 -4.7712 4.5089 42 1 1.3577 -3.8042 7.3988 43 1 0.0679 -7.6215 7.0093 44 1 3.1555 -0.6041 3.7816 45 1 1.6318 -0.2558 4.6384 46 1 1.8731 1.0348 2.4871 47 1 0.4400 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481334412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:30 Heat of formation + Delta-G solvation = -100.014010 kcal Electronic energy + Delta-G solvation = -29850.566406 eV Core-core repulsion = 25647.038350 eV Total energy + Delta-G solvation = -4203.528056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.42285 -41.25684 -39.74941 -39.32113 -37.37623 -36.79850 -35.08434 -34.65844 -32.88885 -31.94470 -31.47337 -29.82000 -27.21928 -26.41118 -25.31306 -24.22177 -23.78527 -22.98399 -22.29548 -20.72726 -19.69710 -19.33828 -19.22643 -18.32793 -17.84407 -17.69894 -16.92563 -16.79118 -16.72734 -16.53073 -16.16026 -15.92243 -15.51632 -15.39216 -15.31853 -15.02139 -14.79513 -14.33604 -14.26870 -14.15401 -13.79336 -13.63690 -13.01857 -12.96140 -12.93780 -12.81625 -12.76833 -12.60994 -12.23205 -12.09317 -11.97537 -11.71499 -11.56826 -11.51423 -11.46714 -11.22448 -11.08936 -10.88908 -10.76589 -10.54986 -9.62622 -8.93743 -7.90994 -5.16516 0.47148 1.39699 1.47894 1.49009 1.57402 1.57761 1.87613 1.95341 2.18912 2.58591 2.88985 3.42359 3.43093 3.55602 3.82980 3.85283 3.87541 3.98152 4.17992 4.29640 4.31976 4.40857 4.45391 4.46062 4.59551 4.62754 4.70341 4.78657 4.86107 4.93162 4.99026 5.04891 5.05647 5.13967 5.17941 5.31512 5.39550 5.45845 5.56134 5.63809 5.76041 5.76332 5.86059 6.32963 6.33399 6.41242 7.07953 7.10585 7.39983 8.19209 8.41840 9.32575 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.002245 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.565414 B =12467.988850 C =13104.072466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 H 0.035 0.965 4 N -0.735 5.735 5 C -0.232 4.232 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.295 1.295 12 H -0.296 1.296 13 C -0.081 4.081 14 C -0.125 4.125 15 C 0.109 3.891 16 N -0.602 5.602 17 C 0.521 3.479 18 O -0.571 6.571 19 C -0.142 4.142 20 C 0.114 3.886 21 H 0.148 0.852 22 N -0.703 5.703 23 C 0.705 3.295 24 O -0.583 6.583 25 N -0.668 5.668 26 C 0.541 3.459 27 O -0.484 6.484 28 C 0.115 3.885 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.376 0.624 34 H 0.249 0.751 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.448 0.552 43 H 0.442 0.558 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -5.296 21.153 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.053 0.947 4 N -0.376 5.376 5 C -0.364 4.364 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.223 1.223 12 H -0.224 1.224 13 C -0.100 4.100 14 C -0.163 4.163 15 C -0.013 4.013 16 N -0.334 5.334 17 C 0.310 3.690 18 O -0.451 6.451 19 C -0.182 4.182 20 C 0.004 3.996 21 H 0.165 0.835 22 N -0.368 5.368 23 C 0.405 3.595 24 O -0.460 6.460 25 N -0.339 5.339 26 C 0.327 3.673 27 O -0.355 6.355 28 C -0.007 4.007 29 C -0.157 4.157 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.294 0.706 43 H 0.286 0.714 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.452 -5.143 21.571 22.837 hybrid contribution 0.474 0.038 -1.264 1.351 sum -4.978 -5.105 20.307 21.523 Atomic orbital electron populations 1.22375 0.98193 1.00908 1.00092 1.20439 0.92556 0.94721 0.86066 0.94666 1.42683 1.78324 1.10541 1.06063 1.19614 1.34097 0.94029 0.88687 0.91232 1.25412 1.03410 0.96890 1.01022 1.69783 1.52888 1.09963 1.29199 0.85211 0.76691 0.78203 0.80522 1.19428 1.22269 1.22388 1.21244 0.99663 0.95275 0.93831 1.21892 1.01296 0.95533 0.97607 1.21918 1.01140 0.95527 0.82716 1.48153 1.56376 1.11192 1.17700 1.20545 0.76743 0.89537 0.82141 1.90688 1.55610 1.66462 1.32330 1.21973 1.04395 0.93535 0.98328 1.21811 0.95477 0.94808 0.87472 0.83506 1.45703 1.49219 1.09198 1.32716 1.16019 0.79537 0.82240 0.81736 1.91046 1.46117 1.79418 1.29425 1.44176 1.43771 1.14789 1.31145 1.20676 0.78521 0.88936 0.79155 1.90893 1.32958 1.73699 1.37904 1.21612 1.00296 0.79993 0.98793 1.21921 1.01376 0.99636 0.92789 0.91349 0.95497 0.93345 0.79035 0.94202 0.92096 0.91176 0.92020 0.90392 0.87233 0.84356 0.85821 0.70567 0.71377 0.90764 0.89167 0.90033 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 8.79 71.98 0.63 -4.39 16 2 C 0.17 6.00 2.72 44.99 0.12 6.12 16 3 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 4 N -0.73 -34.22 5.04 -322.93 -1.63 -35.85 16 5 C -0.23 -12.37 9.93 84.04 0.83 -11.54 16 6 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 7 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.97 -56.96 13.06 21.65 0.28 -56.68 16 9 Si 0.96 45.23 29.55 68.60 2.03 47.25 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 13 C -0.08 -2.13 2.14 -10.77 -0.02 -2.16 16 14 C -0.13 -2.96 4.81 30.67 0.15 -2.81 16 15 C 0.11 1.77 6.34 86.36 0.55 2.32 16 16 N -0.60 -9.99 2.97 -818.90 -2.43 -12.42 16 17 C 0.52 8.21 7.60 87.66 0.67 8.87 16 18 O -0.57 -11.71 14.50 -3.03 -0.04 -11.75 16 19 C -0.14 -1.40 3.80 29.85 0.11 -1.28 16 20 C 0.11 1.21 3.15 44.37 0.14 1.35 16 21 H 0.15 1.42 7.96 -2.39 -0.02 1.40 16 22 N -0.70 -8.90 5.94 -459.13 -2.73 -11.62 16 23 C 0.71 11.26 9.00 179.33 1.61 12.87 16 24 O -0.58 -14.07 18.04 -3.83 -0.07 -14.14 16 25 N -0.67 -7.62 5.70 -440.87 -2.51 -10.13 16 26 C 0.54 6.73 8.14 87.94 0.72 7.45 16 27 O -0.48 -8.76 18.02 -2.89 -0.05 -8.81 16 28 C 0.12 2.06 6.43 86.37 0.56 2.62 16 29 C -0.12 -2.41 4.97 30.67 0.15 -2.26 16 30 H 0.07 1.77 6.46 -2.39 -0.02 1.75 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.55 6.46 -2.39 -0.02 1.53 16 33 H 0.38 18.46 6.04 -92.71 -0.56 17.90 16 34 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.65 6.51 -2.39 -0.02 1.64 16 37 H 0.06 1.82 6.46 -2.39 -0.02 1.81 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.20 5.93 -2.39 -0.01 1.19 16 40 H 0.14 1.07 7.69 -2.39 -0.02 1.05 16 41 H 0.12 0.88 7.94 -2.39 -0.02 0.86 16 42 H 0.45 5.86 8.30 -92.71 -0.77 5.09 16 43 H 0.44 3.52 8.96 -92.70 -0.83 2.69 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.69 7.00 -2.39 -0.02 1.67 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 1.46 6.51 -2.39 -0.02 1.44 16 Total: -1.00 -71.75 374.64 -1.59 -73.33 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -1.11 Total: 27.39 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.69 Total: 13.44 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -9.02 Total: -126.71 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.17 Total: -34.71 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.75 -1.59 -73.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481334412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.683 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds