Wall clock time and date at job start Tue Mar 31 2020 22:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31611 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47483 * 90.00178 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48502 * 109.47495 * 329.99664 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 N 1.46500 * 109.46662 * 180.02562 * 19 17 16 21 21 C 1.34772 * 124.17739 * 90.00632 * 20 19 17 22 22 O 1.21230 * 127.15724 * 359.97438 * 21 20 19 23 23 C 1.51579 * 105.68567 * 179.97438 * 21 20 19 24 24 N 1.47317 * 103.59236 * 0.02562 * 23 21 20 25 25 C 1.33791 * 124.17864 * 269.69818 * 20 19 17 26 26 O 1.21540 * 123.77339 * 0.03981 * 25 20 19 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.97008 * 120.00329 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 39 39 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 40 40 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 41 41 H 1.09002 * 110.59774 * 118.52327 * 23 21 20 42 42 H 1.08996 * 110.60485 * 241.31944 * 23 21 20 43 43 H 0.97006 * 126.68627 * 180.02562 * 24 23 21 44 44 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 45 45 H 1.08999 * 109.70287 * 173.47071 * 27 16 15 46 46 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 47 47 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.7220 -0.0091 -4.6468 9 14 3.0446 -2.4771 -3.4283 10 1 1.8455 -3.2952 -3.7415 11 1 4.1155 -2.7706 -4.4143 12 1 3.5256 -2.8065 -2.0625 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 7 -0.0078 -4.5749 5.8443 21 6 -1.3440 -4.5115 6.0080 22 8 -2.1633 -4.1281 5.2008 23 6 -1.6096 -5.0192 7.4113 24 7 -0.2660 -5.3392 7.9237 25 6 0.6010 -5.0523 6.9359 26 8 1.8033 -5.2053 7.0265 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.0419 -0.4672 -5.4398 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8756 -2.6711 0.3465 37 1 3.1571 -2.9723 2.4136 38 1 1.6341 -3.8900 2.5391 39 1 0.0410 -4.3411 3.7608 40 1 1.5978 -4.7713 4.5088 41 1 -2.0760 -4.2430 8.0181 42 1 -2.2353 -5.9112 7.3846 43 1 -0.0491 -5.6927 8.8007 44 1 3.1555 -0.6043 3.7815 45 1 1.6337 -0.2543 4.6384 46 1 1.8731 1.0347 2.4871 47 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481339694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:44 Heat of formation + Delta-G solvation = -83.370592 kcal Electronic energy + Delta-G solvation = -30304.196385 eV Core-core repulsion = 26101.390041 eV Total energy + Delta-G solvation = -4202.806344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.42123 -41.30257 -39.70139 -39.40126 -37.22552 -37.00689 -35.72976 -34.70938 -32.95592 -32.09881 -30.59680 -29.55687 -28.43328 -26.66061 -25.32740 -24.35467 -23.96547 -23.14988 -21.91656 -20.81208 -19.99100 -19.59206 -19.10464 -18.71277 -17.88268 -17.59306 -17.11468 -16.62903 -16.55413 -16.32006 -16.24234 -16.07530 -15.53869 -15.31332 -15.22584 -15.02756 -14.91978 -14.52870 -14.40486 -14.25776 -14.15262 -13.99413 -13.37460 -13.16270 -13.10311 -12.92579 -12.81255 -12.71175 -12.20321 -12.14608 -11.83321 -11.81650 -11.72309 -11.64782 -11.40826 -11.34221 -11.15466 -10.92320 -10.68836 -10.41685 -9.75827 -9.27188 -7.98576 -5.31222 0.59425 0.99566 1.38479 1.39243 1.44013 1.51187 1.73922 2.08435 2.26790 2.52037 3.01934 3.29709 3.32971 3.55760 3.69474 3.74939 3.86850 4.02004 4.06462 4.14505 4.20407 4.28839 4.30749 4.34336 4.37014 4.52424 4.61891 4.64509 4.69079 4.74930 4.82623 4.90528 4.95715 5.05811 5.09245 5.20700 5.30883 5.37891 5.50175 5.68389 5.80854 5.82058 5.95414 6.22313 6.25743 6.33693 6.92817 7.06626 7.13129 7.89746 8.09847 9.23433 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002559 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.788966 B =10939.352869 C =11218.463042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 H 0.038 0.962 4 N -0.748 5.748 5 C -0.225 4.225 6 H 0.051 0.949 7 C -0.071 4.071 8 N -0.989 5.989 9 Si 0.954 3.046 10 H -0.279 1.279 11 H -0.300 1.300 12 H -0.242 1.242 13 C -0.084 4.084 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.600 5.600 17 C 0.499 3.501 18 O -0.578 6.578 19 C 0.096 3.904 20 N -0.569 5.569 21 C 0.515 3.485 22 O -0.501 6.501 23 C 0.076 3.924 24 N -0.707 5.707 25 C 0.700 3.300 26 O -0.584 6.584 27 C 0.115 3.885 28 C -0.118 4.118 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.367 0.633 33 H 0.256 0.744 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.167 0.833 43 H 0.455 0.545 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -14.981 29.105 33.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.056 0.944 4 N -0.393 5.393 5 C -0.356 4.356 6 H 0.069 0.931 7 C -0.261 4.261 8 N -0.640 5.640 9 Si 0.781 3.219 10 H -0.205 1.205 11 H -0.228 1.228 12 H -0.166 1.166 13 C -0.104 4.104 14 C -0.169 4.169 15 C -0.017 4.017 16 N -0.333 5.333 17 C 0.287 3.713 18 O -0.458 6.458 19 C -0.029 4.029 20 N -0.314 5.314 21 C 0.305 3.695 22 O -0.372 6.372 23 C -0.050 4.050 24 N -0.372 5.372 25 C 0.400 3.600 26 O -0.461 6.461 27 C -0.007 4.007 28 C -0.156 4.156 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.202 0.798 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.184 0.816 43 H 0.303 0.697 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.698 -14.308 29.028 33.266 hybrid contribution 0.525 -0.412 -0.718 0.980 sum -7.173 -14.720 28.311 32.705 Atomic orbital electron populations 1.22369 0.97988 1.01320 1.00124 1.20368 0.92552 0.94915 0.85257 0.94418 1.42810 1.79914 1.09803 1.06745 1.19023 1.34871 0.94299 0.87433 0.93106 1.25544 1.02625 1.02871 0.95089 1.69900 1.55134 1.37856 1.01105 0.85423 0.77598 0.80426 0.78455 1.20528 1.22761 1.16580 1.21297 1.00421 0.95201 0.93434 1.21995 1.01728 0.95454 0.97758 1.22051 1.01877 0.95405 0.82381 1.48153 1.56114 1.11398 1.17607 1.21164 0.77223 0.90381 0.82552 1.90672 1.55778 1.66380 1.32932 1.21679 1.01684 0.92572 0.86958 1.46011 1.09998 1.59604 1.15815 1.21709 0.80943 0.75706 0.91121 1.90835 1.50467 1.45242 1.50668 1.22714 0.86353 1.06417 0.89500 1.45330 1.06275 1.68799 1.16846 1.15982 0.85254 0.77696 0.81068 1.90996 1.13280 1.59948 1.81841 1.21615 1.00544 0.79788 0.98745 1.21904 1.01261 0.99794 0.92677 0.95612 0.92624 0.91499 0.79838 0.93549 0.90866 0.90914 0.90862 0.89287 0.87097 0.83734 0.83820 0.83184 0.81574 0.69728 0.90137 0.90253 0.89742 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 8.79 71.98 0.63 -4.61 16 2 C 0.18 6.23 2.72 44.99 0.12 6.35 16 3 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 4 N -0.75 -32.96 4.85 -322.94 -1.57 -34.52 16 5 C -0.23 -12.61 10.41 84.03 0.87 -11.74 16 6 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 7 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 8 N -0.99 -63.52 13.97 21.65 0.30 -63.22 16 9 Si 0.95 44.10 27.74 68.60 1.90 46.00 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 13 C -0.08 -2.19 2.14 -10.77 -0.02 -2.21 16 14 C -0.13 -2.92 4.81 30.67 0.15 -2.77 16 15 C 0.10 1.74 6.34 86.37 0.55 2.29 16 16 N -0.60 -12.50 2.97 -818.91 -2.43 -14.93 16 17 C 0.50 11.87 7.77 87.66 0.68 12.55 16 18 O -0.58 -18.09 15.85 -3.04 -0.05 -18.14 16 19 C 0.10 1.65 4.53 85.63 0.39 2.04 16 20 N -0.57 -10.24 2.09 -777.22 -1.63 -11.86 16 21 C 0.52 8.16 8.31 87.94 0.73 8.89 16 22 O -0.50 -11.33 17.76 -2.88 -0.05 -11.38 16 23 C 0.08 0.34 7.97 85.76 0.68 1.03 16 24 N -0.71 -5.74 6.58 -480.31 -3.16 -8.91 16 25 C 0.70 12.89 8.62 179.44 1.55 14.44 16 26 O -0.58 -15.37 17.48 -3.84 -0.07 -15.43 16 27 C 0.12 2.48 6.43 86.36 0.56 3.04 16 28 C -0.12 -2.63 4.96 30.67 0.15 -2.48 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.74 6.46 -2.39 -0.02 1.72 16 31 H 0.07 1.86 6.46 -2.39 -0.02 1.84 16 32 H 0.37 15.08 3.90 -92.71 -0.36 14.72 16 33 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.65 6.51 -2.38 -0.02 1.64 16 36 H 0.07 1.77 6.46 -2.39 -0.02 1.76 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.20 5.93 -2.39 -0.01 1.18 16 39 H 0.15 1.91 7.55 -2.39 -0.02 1.89 16 40 H 0.14 1.95 7.66 -2.39 -0.02 1.93 16 41 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.17 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.46 1.24 8.96 -92.70 -0.83 0.41 16 44 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.08 1.92 7.01 -2.39 -0.02 1.91 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.07 1.58 6.51 -2.38 -0.02 1.56 16 Total: -1.00 -87.09 374.19 0.53 -86.55 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.22 Total: 22.70 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.51 Total: 23.15 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -8.48 Total: -133.45 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.17 Total: -44.96 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.90 Total: 46.00 kcal Total: -87.09 0.53 -86.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481339694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.182 kcal (2) G-P(sol) polarization free energy of solvation -87.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds