Wall clock time and date at job start Tue Mar 31 2020 22:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47156 * 90.00281 * 9 7 5 11 11 H 1.48502 * 109.47158 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47022 * 329.99784 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 C 1.53043 * 109.45734 * 180.02562 * 13 2 1 15 15 C 1.53201 * 109.30639 * 178.59803 * 14 13 2 16 16 N 1.46919 * 108.76708 * 54.65698 * 15 14 13 17 17 C 1.34779 * 120.63100 * 126.40150 * 16 15 14 18 18 O 1.21280 * 119.99856 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00133 * 359.97438 * 17 16 15 20 20 N 1.46497 * 109.47154 * 180.02562 * 19 17 16 21 21 C 1.34771 * 124.17799 * 90.00422 * 20 19 17 22 22 O 1.21232 * 127.15689 * 359.97438 * 21 20 19 23 23 C 1.51583 * 105.68571 * 179.97438 * 21 20 19 24 24 N 1.47311 * 103.59159 * 359.97438 * 23 21 20 25 25 C 1.33787 * 124.17848 * 269.69926 * 20 19 17 26 26 O 1.21538 * 123.77011 * 0.03563 * 25 20 19 27 27 C 1.46927 * 118.73892 * 306.38616 * 16 15 14 28 28 C 1.53039 * 109.46170 * 59.96860 * 13 2 1 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 33 33 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.45834 * 299.99563 * 13 2 1 35 35 H 1.08998 * 109.49864 * 298.56065 * 14 13 2 36 36 H 1.08999 * 109.49867 * 58.66708 * 14 13 2 37 37 H 1.08998 * 109.59853 * 294.86718 * 15 14 13 38 38 H 1.09000 * 109.69631 * 174.50268 * 15 14 13 39 39 H 1.09000 * 109.47070 * 299.99738 * 19 17 16 40 40 H 1.08999 * 109.47140 * 59.99383 * 19 17 16 41 41 H 1.08992 * 110.60247 * 118.52314 * 23 21 20 42 42 H 1.08997 * 110.59753 * 241.31756 * 23 21 20 43 43 H 0.97002 * 126.68980 * 180.02562 * 24 23 21 44 44 H 1.09010 * 109.58200 * 293.81608 * 27 16 15 45 45 H 1.08996 * 109.70864 * 173.46625 * 27 16 15 46 46 H 1.08997 * 109.50134 * 301.34035 * 28 13 2 47 47 H 1.09003 * 109.49162 * 61.43719 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.5212 0.1782 5.8860 11 1 3.8936 -0.3237 5.9145 12 1 3.0943 1.6948 4.8343 13 6 2.0400 -0.7212 -1.2494 14 6 3.5704 -0.7215 -1.2487 15 6 4.0773 -1.4747 -2.4828 16 7 3.4748 -0.8768 -3.6819 17 6 4.2483 -0.4580 -4.7031 18 8 3.7387 0.0335 -5.6878 19 6 5.7462 -0.6004 -4.6213 20 7 6.3543 -0.0750 -5.8462 21 6 6.7390 1.2060 -6.0112 22 8 6.6502 2.1069 -5.2049 23 6 7.3059 1.2861 -7.4148 24 7 7.1618 -0.0882 -7.9253 25 6 6.6016 -0.8090 -6.9371 26 8 6.3459 -1.9938 -7.0265 27 6 2.0129 -0.7445 -3.7470 28 6 1.5291 0.0001 -2.4987 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.2480 -2.3964 4.2420 34 1 1.6766 -1.7488 -1.2492 35 1 3.9345 0.3055 -1.2741 36 1 3.9337 -1.2147 -0.3471 37 1 3.7903 -2.5240 -2.4141 38 1 5.1628 -1.3957 -2.5412 39 1 6.1180 -0.0411 -3.7628 40 1 6.0055 -1.6531 -4.5090 41 1 6.7292 1.9836 -8.0221 42 1 8.3554 1.5794 -7.3883 43 1 7.4231 -0.4112 -8.8018 44 1 1.5576 -1.7343 -3.7814 45 1 1.7340 -0.1828 -4.6385 46 1 0.4394 0.0207 -2.4869 47 1 1.9127 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481339695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:49 Heat of formation + Delta-G solvation = -60.573244 kcal Electronic energy + Delta-G solvation = -30112.858085 eV Core-core repulsion = 25911.040308 eV Total energy + Delta-G solvation = -4201.817777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.69394 -40.19709 -38.88132 -37.98534 -36.41598 -35.47856 -34.98357 -32.98352 -31.33182 -30.79265 -29.16602 -28.22573 -27.71169 -25.32712 -23.83954 -23.25959 -22.86390 -21.81102 -20.75880 -19.69187 -19.14121 -18.37990 -17.99659 -17.14814 -17.10035 -16.69210 -16.22571 -15.64905 -15.53180 -15.29742 -14.89522 -14.50424 -14.38366 -14.16444 -13.99782 -13.86152 -13.72849 -13.69160 -13.31682 -12.90914 -12.57630 -12.45385 -12.26552 -12.07099 -11.61939 -11.35461 -11.17577 -11.01214 -10.87365 -10.74779 -10.71319 -10.62083 -10.29281 -10.24580 -10.18508 -9.94478 -9.82789 -9.62398 -9.57705 -8.91149 -8.65804 -6.95093 -5.77224 -3.04918 1.30762 1.70554 2.41635 2.56688 2.75588 3.01217 3.42814 3.48740 3.49610 3.60945 4.23734 4.35432 4.56225 4.58104 4.71149 4.77625 4.87512 5.02386 5.03916 5.07419 5.20302 5.22603 5.36325 5.48826 5.54101 5.65789 5.76519 5.90805 5.92634 5.99845 6.10788 6.20571 6.31326 6.34346 6.39447 6.46834 6.53065 6.64348 6.65806 6.77137 6.94223 7.00297 7.12941 7.26420 7.70672 7.74194 7.96982 8.41880 9.53206 10.11199 10.46153 11.45462 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002468 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.198739 B =11340.819536 C =11924.530644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.723 5.723 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.090 4.090 14 C -0.124 4.124 15 C 0.102 3.898 16 N -0.601 5.601 17 C 0.505 3.495 18 O -0.540 6.540 19 C 0.100 3.900 20 N -0.562 5.562 21 C 0.524 3.476 22 O -0.463 6.463 23 C 0.066 3.934 24 N -0.728 5.728 25 C 0.708 3.292 26 O -0.540 6.540 27 C 0.114 3.886 28 C -0.128 4.128 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.442 0.558 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 3.326 -23.406 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.364 5.364 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.109 4.109 14 C -0.162 4.162 15 C -0.020 4.020 16 N -0.335 5.335 17 C 0.291 3.709 18 O -0.418 6.418 19 C -0.025 4.025 20 N -0.308 5.308 21 C 0.311 3.689 22 O -0.331 6.331 23 C -0.061 4.061 24 N -0.393 5.393 25 C 0.408 3.592 26 O -0.413 6.413 27 C -0.008 4.008 28 C -0.167 4.167 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.286 0.714 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.140 3.558 -23.280 24.917 hybrid contribution 0.172 0.010 0.743 0.763 sum 8.312 3.569 -22.536 24.284 Atomic orbital electron populations 1.22496 0.99532 1.00752 0.99861 1.20214 0.91599 0.95343 0.86045 0.93701 1.42410 1.78089 1.10614 1.05284 1.19220 1.36114 0.93789 0.87381 0.91361 1.24701 1.02397 0.95961 0.97933 1.69650 1.51207 1.08625 1.28798 0.86236 0.77258 0.78832 0.84158 1.21853 1.21848 1.20840 1.21381 0.94877 0.99991 0.94666 1.21909 0.96193 1.01049 0.97025 1.21990 0.97689 0.97896 0.84472 1.48114 1.07441 1.60509 1.17427 1.20604 0.89052 0.78183 0.83070 1.90688 1.74898 1.44725 1.31478 1.21550 0.91473 1.03547 0.85955 1.45846 1.57129 1.12067 1.15733 1.20907 0.76693 0.81665 0.89602 1.90858 1.52530 1.40650 1.49097 1.22442 1.04749 0.86256 0.92701 1.45338 1.66886 1.09805 1.17275 1.15754 0.78086 0.84962 0.80361 1.91028 1.56843 1.12430 1.81019 1.21655 0.78560 1.00958 0.99650 1.22022 1.01241 0.99665 0.93730 0.93026 0.93589 0.94308 0.78344 0.93597 0.91288 0.91761 0.88675 0.90621 0.90246 0.85444 0.85430 0.85738 0.85739 0.71380 0.91378 0.89384 0.90280 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.14 37.16 0.34 -2.56 16 2 C 0.18 3.32 2.47 -67.93 -0.17 3.15 16 3 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.00 4.41 -53.43 -0.24 -17.24 16 5 C -0.23 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 9 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.09 -1.34 1.79 -90.57 -0.16 -1.50 16 14 C -0.12 -1.77 5.22 -26.61 -0.14 -1.91 16 15 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 16 N -0.60 -7.55 2.97 -172.77 -0.51 -8.07 16 17 C 0.50 6.88 7.77 -10.99 -0.09 6.79 16 18 O -0.54 -9.08 15.85 5.56 0.09 -8.99 16 19 C 0.10 1.06 4.53 -5.20 -0.02 1.03 16 20 N -0.56 -6.00 2.09 -122.03 -0.26 -6.25 16 21 C 0.52 5.08 8.32 -10.55 -0.09 4.99 16 22 O -0.46 -5.93 17.76 5.60 0.10 -5.83 16 23 C 0.07 0.31 7.97 -4.32 -0.03 0.27 16 24 N -0.73 -4.39 6.58 -65.74 -0.43 -4.83 16 25 C 0.71 7.59 8.62 -88.02 -0.76 6.83 16 26 O -0.54 -7.69 17.48 5.33 0.09 -7.60 16 27 C 0.11 1.42 6.43 -3.71 -0.02 1.39 16 28 C -0.13 -1.65 5.04 -26.62 -0.13 -1.79 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 32 H 0.38 9.53 7.58 -40.82 -0.31 9.22 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.59 7.41 -51.93 -0.38 1.20 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 39 H 0.13 1.16 7.56 -51.93 -0.39 0.76 16 40 H 0.13 1.15 7.65 -51.93 -0.40 0.75 16 41 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.44 1.47 8.96 -40.82 -0.37 1.11 16 44 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 46 H 0.08 0.95 6.36 -51.93 -0.33 0.62 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -36.41 382.50 -8.19 -44.60 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.95 Total: 7.06 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.55 Total: 10.93 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.71 Total: -63.00 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.28 Total: -22.42 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.41 -8.19 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481339695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.971 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds