Wall clock time and date at job start Tue Mar 31 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47156 * 90.00281 * 9 7 5 11 11 H 1.48502 * 109.47158 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47022 * 329.99784 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 C 1.53043 * 109.45734 * 180.02562 * 13 2 1 15 15 C 1.53201 * 109.30639 * 178.59803 * 14 13 2 16 16 N 1.46919 * 108.76708 * 54.65698 * 15 14 13 17 17 C 1.34779 * 120.63100 * 126.40150 * 16 15 14 18 18 O 1.21280 * 119.99856 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00133 * 359.97438 * 17 16 15 20 20 N 1.46497 * 109.47154 * 180.02562 * 19 17 16 21 21 C 1.34771 * 124.17799 * 90.00422 * 20 19 17 22 22 O 1.21232 * 127.15689 * 359.97438 * 21 20 19 23 23 C 1.51583 * 105.68571 * 179.97438 * 21 20 19 24 24 N 1.47311 * 103.59159 * 359.97438 * 23 21 20 25 25 C 1.33787 * 124.17848 * 269.69926 * 20 19 17 26 26 O 1.21538 * 123.77011 * 0.03563 * 25 20 19 27 27 C 1.46927 * 118.73892 * 306.38616 * 16 15 14 28 28 C 1.53039 * 109.46170 * 59.96860 * 13 2 1 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 33 33 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.45834 * 299.99563 * 13 2 1 35 35 H 1.08998 * 109.49864 * 298.56065 * 14 13 2 36 36 H 1.08999 * 109.49867 * 58.66708 * 14 13 2 37 37 H 1.08998 * 109.59853 * 294.86718 * 15 14 13 38 38 H 1.09000 * 109.69631 * 174.50268 * 15 14 13 39 39 H 1.09000 * 109.47070 * 299.99738 * 19 17 16 40 40 H 1.08999 * 109.47140 * 59.99383 * 19 17 16 41 41 H 1.08992 * 110.60247 * 118.52314 * 23 21 20 42 42 H 1.08997 * 110.59753 * 241.31756 * 23 21 20 43 43 H 0.97002 * 126.68980 * 180.02562 * 24 23 21 44 44 H 1.09010 * 109.58200 * 293.81608 * 27 16 15 45 45 H 1.08996 * 109.70864 * 173.46625 * 27 16 15 46 46 H 1.08997 * 109.50134 * 301.34035 * 28 13 2 47 47 H 1.09003 * 109.49162 * 61.43719 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.5212 0.1782 5.8860 11 1 3.8936 -0.3237 5.9145 12 1 3.0943 1.6948 4.8343 13 6 2.0400 -0.7212 -1.2494 14 6 3.5704 -0.7215 -1.2487 15 6 4.0773 -1.4747 -2.4828 16 7 3.4748 -0.8768 -3.6819 17 6 4.2483 -0.4580 -4.7031 18 8 3.7387 0.0335 -5.6878 19 6 5.7462 -0.6004 -4.6213 20 7 6.3543 -0.0750 -5.8462 21 6 6.7390 1.2060 -6.0112 22 8 6.6502 2.1069 -5.2049 23 6 7.3059 1.2861 -7.4148 24 7 7.1618 -0.0882 -7.9253 25 6 6.6016 -0.8090 -6.9371 26 8 6.3459 -1.9938 -7.0265 27 6 2.0129 -0.7445 -3.7470 28 6 1.5291 0.0001 -2.4987 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.2480 -2.3964 4.2420 34 1 1.6766 -1.7488 -1.2492 35 1 3.9345 0.3055 -1.2741 36 1 3.9337 -1.2147 -0.3471 37 1 3.7903 -2.5240 -2.4141 38 1 5.1628 -1.3957 -2.5412 39 1 6.1180 -0.0411 -3.7628 40 1 6.0055 -1.6531 -4.5090 41 1 6.7292 1.9836 -8.0221 42 1 8.3554 1.5794 -7.3883 43 1 7.4231 -0.4112 -8.8018 44 1 1.5576 -1.7343 -3.7814 45 1 1.7340 -0.1828 -4.6385 46 1 0.4394 0.0207 -2.4869 47 1 1.9127 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481339695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:48 Heat of formation + Delta-G solvation = -87.829674 kcal Electronic energy + Delta-G solvation = -30114.040012 eV Core-core repulsion = 25911.040308 eV Total energy + Delta-G solvation = -4202.999704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.42255 -41.25279 -39.70158 -39.22845 -37.22481 -36.92321 -35.73076 -34.66101 -32.67889 -32.10513 -30.40134 -29.43700 -28.41818 -26.63869 -25.52160 -24.10718 -23.91155 -22.88221 -21.80333 -21.05241 -20.17776 -19.22274 -19.08765 -18.71612 -17.87497 -17.61348 -17.08685 -16.77358 -16.51924 -16.32555 -16.16768 -15.66884 -15.48256 -15.31315 -15.13304 -15.03755 -14.92182 -14.67861 -14.22292 -14.17387 -13.99215 -13.66411 -13.45143 -13.31121 -12.99116 -12.85976 -12.76504 -12.30405 -12.23054 -12.16585 -12.10045 -11.82790 -11.73348 -11.48114 -11.40843 -11.33037 -11.20105 -10.89107 -10.67937 -10.41491 -9.73800 -8.93396 -7.89889 -5.15714 0.59324 0.99433 1.38466 1.48423 1.48882 1.56863 1.74312 2.08871 2.27077 2.58797 3.01748 3.29819 3.43822 3.68533 3.76817 3.80269 3.87163 4.05808 4.12538 4.22698 4.24029 4.28803 4.31033 4.39228 4.44931 4.55887 4.58776 4.64422 4.77677 4.79764 4.86813 4.93093 5.04859 5.07070 5.14536 5.25149 5.34394 5.47806 5.52859 5.61169 5.68873 5.81000 5.96114 6.22320 6.33255 6.33643 6.92160 7.06863 7.40006 8.17707 8.41412 9.33251 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002468 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.198739 B =11340.819536 C =11924.530644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.033 0.967 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.962 3.038 10 H -0.292 1.292 11 H -0.296 1.296 12 H -0.273 1.273 13 C -0.081 4.081 14 C -0.118 4.118 15 C 0.108 3.892 16 N -0.600 5.600 17 C 0.499 3.501 18 O -0.577 6.577 19 C 0.096 3.904 20 N -0.569 5.569 21 C 0.514 3.486 22 O -0.502 6.502 23 C 0.078 3.922 24 N -0.706 5.706 25 C 0.700 3.300 26 O -0.584 6.584 27 C 0.114 3.886 28 C -0.116 4.116 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.374 0.626 33 H 0.249 0.751 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.456 0.544 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.325 4.119 -25.202 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.051 0.949 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.793 3.207 10 H -0.219 1.219 11 H -0.223 1.223 12 H -0.199 1.199 13 C -0.100 4.100 14 C -0.156 4.156 15 C -0.014 4.014 16 N -0.333 5.333 17 C 0.287 3.713 18 O -0.457 6.457 19 C -0.029 4.029 20 N -0.314 5.314 21 C 0.304 3.696 22 O -0.374 6.374 23 C -0.048 4.048 24 N -0.372 5.372 25 C 0.400 3.600 26 O -0.460 6.460 27 C -0.008 4.008 28 C -0.155 4.155 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.185 0.815 43 H 0.303 0.697 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.855 4.398 -25.131 27.006 hybrid contribution -0.082 -0.169 1.238 1.252 sum 8.772 4.229 -23.893 25.802 Atomic orbital electron populations 1.22366 0.98124 1.00849 1.00448 1.20423 0.92457 0.94688 0.85959 0.94911 1.42545 1.78275 1.10271 1.05948 1.19518 1.34334 0.93861 0.88528 0.91422 1.25386 1.03420 0.96826 1.00886 1.69785 1.52900 1.09908 1.29149 0.85295 0.76736 0.78078 0.80612 1.21908 1.22294 1.19863 1.21260 0.95276 0.99769 0.93681 1.21776 0.95790 1.00564 0.97484 1.22010 0.99164 0.97782 0.82454 1.48189 1.07558 1.60067 1.17486 1.21126 0.90275 0.77321 0.82572 1.90658 1.75795 1.46408 1.32860 1.21644 0.89471 1.04857 0.86897 1.46017 1.56904 1.12737 1.15781 1.21756 0.75943 0.80690 0.91189 1.90836 1.54265 1.41461 1.50795 1.22709 1.07221 0.85552 0.89361 1.45313 1.65058 1.09930 1.16865 1.15977 0.78299 0.84664 0.81052 1.90993 1.58922 1.14271 1.81839 1.21653 0.78761 1.01540 0.98805 1.21912 1.01989 0.98828 0.92736 0.95167 0.93694 0.90973 0.79338 0.94202 0.91044 0.92794 0.91230 0.89358 0.87684 0.84115 0.83911 0.83068 0.81539 0.69678 0.89914 0.90129 0.88859 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.14 71.98 0.66 -4.70 16 2 C 0.17 6.41 2.47 44.99 0.11 6.52 16 3 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 4 N -0.73 -34.75 4.41 -322.94 -1.42 -36.17 16 5 C -0.23 -12.44 9.93 84.04 0.83 -11.60 16 6 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 8 N -0.97 -57.49 13.06 21.65 0.28 -57.20 16 9 Si 0.96 45.80 29.55 68.60 2.03 47.83 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C -0.08 -2.34 1.79 -10.76 -0.02 -2.36 16 14 C -0.12 -3.33 5.22 30.68 0.16 -3.17 16 15 C 0.11 2.29 6.34 86.37 0.55 2.84 16 16 N -0.60 -14.40 2.97 -818.92 -2.43 -16.83 16 17 C 0.50 13.26 7.77 87.65 0.68 13.94 16 18 O -0.58 -19.25 15.85 -3.03 -0.05 -19.30 16 19 C 0.10 1.96 4.53 85.63 0.39 2.34 16 20 N -0.57 -11.52 2.09 -777.24 -1.63 -13.15 16 21 C 0.51 9.18 8.32 87.94 0.73 9.91 16 22 O -0.50 -12.51 17.76 -2.88 -0.05 -12.56 16 23 C 0.08 0.46 7.97 85.76 0.68 1.14 16 24 N -0.71 -6.68 6.58 -480.33 -3.16 -9.85 16 25 C 0.70 14.11 8.62 179.44 1.55 15.66 16 26 O -0.58 -16.34 17.48 -3.83 -0.07 -16.41 16 27 C 0.11 2.69 6.43 86.36 0.55 3.25 16 28 C -0.12 -2.83 5.04 30.67 0.15 -2.67 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.94 6.40 -2.38 -0.02 1.93 16 32 H 0.37 18.99 7.58 -92.71 -0.70 18.28 16 33 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.36 7.41 -2.39 -0.02 2.34 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 1.70 5.93 -2.39 -0.01 1.69 16 39 H 0.14 2.41 7.56 -2.39 -0.02 2.40 16 40 H 0.14 2.40 7.65 -2.39 -0.02 2.39 16 41 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.17 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.46 1.75 8.96 -92.71 -0.83 0.92 16 44 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.08 2.07 7.01 -2.39 -0.02 2.06 16 46 H 0.09 2.01 6.36 -2.39 -0.02 2.00 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -81.24 382.50 0.48 -80.76 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.52 Total: 25.41 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 7.50 Total: 27.48 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -8.36 Total: -133.20 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.17 Total: -48.27 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -81.24 0.48 -80.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481339695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.072 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds