Wall clock time and date at job start Tue Mar 31 2020 22:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47387 * 2 1 4 4 C 1.53009 * 109.46821 * 120.00382 * 2 1 3 5 5 C 1.50694 * 109.46953 * 294.99559 * 4 2 1 6 6 N 1.34776 * 120.00019 * 179.97438 * 5 4 2 7 7 O 1.21291 * 120.00243 * 0.02562 * 5 4 2 8 8 C 1.50702 * 109.47330 * 240.00063 * 2 1 3 9 9 O 1.21287 * 120.00139 * 274.67795 * 8 2 1 10 10 N 1.34774 * 119.99814 * 94.67627 * 8 2 1 11 11 C 1.47859 * 126.92872 * 4.68298 * 10 8 2 12 12 C 1.56001 * 105.12451 * 181.86084 * 11 10 8 13 13 H 1.08997 * 116.18968 * 159.03716 * 12 11 10 14 14 C 1.57085 * 99.48342 * 33.11543 * 12 11 10 15 15 C 1.49288 * 126.92548 * 184.99617 * 10 8 2 16 16 H 1.08998 * 116.12144 * 16.82362 * 15 10 8 17 17 C 1.56007 * 104.12847 * 247.71083 * 15 10 8 18 18 N 1.49702 * 105.05782 * 288.91697 * 12 11 10 19 19 C 1.46900 * 111.00077 * 306.25147 * 18 12 11 20 20 C 1.50691 * 109.47337 * 299.87998 * 19 18 12 21 21 O 1.21299 * 119.99723 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00354 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00145 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00143 * 359.97438 * 23 22 20 25 25 C 1.38943 * 120.00096 * 180.02562 * 23 22 20 26 26 N 1.31412 * 120.00085 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00184 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47111 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47243 * 119.99994 * 27 25 23 30 30 H 1.48509 * 109.46792 * 239.99666 * 27 25 23 31 31 H 1.08996 * 109.47382 * 295.26284 * 1 2 3 32 32 H 1.09000 * 109.47056 * 175.26131 * 1 2 3 33 33 H 1.08999 * 109.46751 * 55.26421 * 1 2 3 34 34 H 1.09001 * 109.47027 * 55.00228 * 4 2 1 35 35 H 1.09002 * 109.46891 * 174.99944 * 4 2 1 36 36 H 0.96995 * 119.99673 * 0.02562 * 6 5 4 37 37 H 0.96999 * 119.99772 * 180.02562 * 6 5 4 38 38 H 1.08999 * 110.31715 * 300.88107 * 11 10 8 39 39 H 1.09007 * 110.31168 * 63.06112 * 11 10 8 40 40 H 1.09004 * 112.36237 * 191.56918 * 14 12 11 41 41 H 1.09003 * 112.43589 * 64.18041 * 14 12 11 42 42 H 1.08996 * 110.32345 * 47.69778 * 17 15 10 43 43 H 1.09002 * 110.32176 * 169.89639 * 17 15 10 44 44 H 1.08996 * 109.47005 * 59.87951 * 19 18 12 45 45 H 1.09003 * 109.47443 * 179.87539 * 19 18 12 46 46 H 0.96996 * 119.99617 * 359.97438 * 22 20 19 47 47 H 0.97002 * 120.00469 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.6413 0.0569 2.4766 6 7 1.9843 -0.3921 3.7002 7 8 1.0109 1.0869 2.3633 8 6 2.0324 -0.7104 -1.2305 9 8 2.1538 -1.9172 -1.2270 10 7 2.3467 -0.0047 -2.3348 11 6 2.3498 1.4670 -2.4777 12 6 2.7406 1.7307 -3.9647 13 1 2.4633 2.7039 -4.3697 14 6 2.0730 0.4763 -4.6343 15 6 2.7558 -0.5515 -3.6624 16 1 2.5356 -1.6048 -3.8360 17 6 4.2503 -0.1272 -3.8048 18 7 4.1897 1.3662 -4.0565 19 6 4.9777 2.0820 -3.0443 20 6 4.8411 3.5673 -3.2592 21 8 4.1551 3.9881 -4.1668 22 7 5.4811 4.4281 -2.4432 23 6 5.3564 5.7793 -2.6384 24 1 4.7455 6.1541 -3.4464 25 6 6.0166 6.6666 -1.7975 26 7 6.7602 6.2107 -0.8146 27 14 5.8460 8.5078 -2.0630 28 1 4.9594 8.7600 -3.2272 29 1 5.2595 9.1308 -0.8494 30 1 7.1844 9.0963 -2.3240 31 1 -0.3634 0.4386 0.9293 32 1 -0.3633 -1.0241 -0.0849 33 1 -0.3633 0.5856 -0.8445 34 1 1.6053 -1.7199 1.2951 35 1 3.1263 -0.7996 1.2056 36 1 2.4881 -1.2160 3.7907 37 1 1.7274 0.1087 4.4902 38 1 1.3588 1.8696 -2.2682 39 1 3.0882 1.9105 -1.8097 40 1 2.3886 0.3412 -5.6689 41 1 0.9874 0.4810 -4.5366 42 1 4.7990 -0.3619 -2.8928 43 1 4.7055 -0.6261 -4.6604 44 1 4.6129 1.8237 -2.0503 45 1 6.0263 1.7972 -3.1318 46 1 6.0294 4.0915 -1.7173 47 1 7.2209 6.8302 -0.2272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481675823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:12 Heat of formation + Delta-G solvation = -67.299804 kcal Electronic energy + Delta-G solvation = -30672.020796 eV Core-core repulsion = 26469.911334 eV Total energy + Delta-G solvation = -4202.109462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22620 -39.98606 -38.74522 -37.80510 -34.36144 -34.14200 -33.93234 -33.45850 -31.38778 -30.82067 -29.68526 -28.12985 -26.56292 -25.32847 -24.38633 -23.66885 -21.40620 -20.64637 -20.19091 -19.28260 -18.53192 -17.94312 -17.84146 -17.32763 -16.70972 -16.37699 -16.06440 -15.61680 -15.47941 -14.93969 -14.70020 -14.49043 -14.07998 -13.87604 -13.81903 -13.48736 -13.34096 -13.00189 -12.71793 -12.64865 -12.44447 -12.16118 -12.02259 -11.79402 -11.59110 -11.44458 -11.40991 -11.36961 -11.33690 -11.10532 -11.03338 -10.86744 -10.35847 -10.25091 -10.19422 -9.96777 -9.73846 -9.53101 -8.74004 -8.42291 -8.05225 -7.96728 -6.44579 -3.85522 2.39976 2.51359 2.72116 3.14795 3.26010 3.32636 3.33402 3.83134 3.89213 4.18751 4.27016 4.40839 4.52072 4.61844 4.69853 4.74954 4.85833 5.00581 5.05017 5.17782 5.21643 5.31585 5.37229 5.40816 5.44522 5.49789 5.63120 5.71463 5.75783 5.77592 5.86211 5.87588 5.88471 6.04235 6.09494 6.15339 6.22677 6.37041 6.51417 6.88158 7.02924 7.09740 7.45603 7.52864 8.00587 8.02651 8.05446 8.57247 9.14792 9.50272 10.00938 10.73061 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.003682 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.608795 B = 7603.112527 C = 9748.055802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.098 0.902 4 C -0.126 4.126 5 C 0.518 3.482 6 N -0.857 5.857 7 O -0.536 6.536 8 C 0.539 3.461 9 O -0.549 6.549 10 N -0.617 5.617 11 C 0.056 3.944 12 C 0.069 3.931 13 H 0.155 0.845 14 C -0.137 4.137 15 C 0.109 3.891 16 H 0.123 0.877 17 C 0.019 3.981 18 N -0.482 5.482 19 C 0.025 3.975 20 C 0.443 3.557 21 O -0.581 6.581 22 N -0.561 5.561 23 C -0.299 4.299 24 H 0.105 0.895 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.267 1.267 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.402 0.598 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -16.705 4.602 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.117 0.883 4 C -0.167 4.167 5 C 0.303 3.697 6 N -0.421 5.421 7 O -0.412 6.412 8 C 0.328 3.672 9 O -0.427 6.427 10 N -0.352 5.352 11 C -0.068 4.068 12 C -0.039 4.039 13 H 0.172 0.828 14 C -0.175 4.175 15 C 0.006 3.994 16 H 0.141 0.859 17 C -0.109 4.109 18 N -0.206 5.206 19 C -0.106 4.106 20 C 0.228 3.772 21 O -0.465 6.465 22 N -0.197 5.197 23 C -0.428 4.428 24 H 0.122 0.878 25 C -0.178 4.178 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.230 0.770 37 H 0.232 0.768 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.586 -16.196 3.434 18.650 hybrid contribution 0.422 0.381 1.831 1.917 sum -8.163 -15.816 5.265 18.561 Atomic orbital electron populations 1.21807 0.91842 1.02183 1.04170 1.20980 0.98652 1.00847 0.90921 0.88329 1.21492 1.03386 1.00515 0.91297 1.20611 0.78515 0.85313 0.85212 1.43871 1.60319 1.29602 1.08306 1.90756 1.39489 1.24321 1.86641 1.20261 0.76474 0.87029 0.83477 1.90668 1.54544 1.14105 1.83386 1.49378 1.66990 1.07771 1.11027 1.23425 1.02741 0.79689 1.00900 1.24871 0.87699 1.00273 0.91067 0.82816 1.23997 0.99750 0.94377 0.99408 1.24031 0.94637 0.99044 0.81715 0.85943 1.24347 0.95392 0.89749 1.01459 1.66144 1.07909 1.01824 1.44707 1.22246 0.99405 0.94785 0.94209 1.19640 0.85298 0.86764 0.85462 1.90471 1.43547 1.78714 1.33775 1.41872 1.43214 1.06298 1.28366 1.19745 1.28154 0.80580 1.14352 0.87763 1.25262 0.96241 1.00734 0.95602 1.69617 1.31087 1.35930 1.17539 0.85812 0.78119 0.82093 0.78402 1.19163 1.20754 1.20747 0.89581 0.92501 0.92184 0.87597 0.88465 0.77013 0.76779 0.90614 0.89930 0.88597 0.90065 0.91797 0.89198 0.92894 0.89188 0.77539 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.96 37.16 0.33 -1.27 16 2 C -0.09 -1.10 2.10 -91.77 -0.19 -1.30 16 3 H 0.10 1.30 6.97 -51.93 -0.36 0.93 16 4 C -0.13 -1.25 4.75 -27.88 -0.13 -1.38 16 5 C 0.52 5.44 7.78 -10.99 -0.09 5.36 16 6 N -0.86 -5.64 8.87 31.22 0.28 -5.36 16 7 O -0.54 -7.80 14.82 5.55 0.08 -7.72 16 8 C 0.54 7.28 6.89 -10.99 -0.08 7.20 16 9 O -0.55 -8.58 16.74 5.55 0.09 -8.49 16 10 N -0.62 -8.07 2.94 -156.81 -0.46 -8.53 16 11 C 0.06 0.78 5.10 -1.69 -0.01 0.77 16 12 C 0.07 1.03 4.14 -62.32 -0.26 0.77 16 13 H 0.15 2.68 6.48 -51.93 -0.34 2.34 16 14 C -0.14 -1.60 6.81 -22.31 -0.15 -1.75 16 15 C 0.11 1.31 5.16 -62.57 -0.32 0.98 16 16 H 0.12 1.38 8.08 -51.93 -0.42 0.96 16 17 C 0.02 0.24 6.37 0.44 0.00 0.24 16 18 N -0.48 -7.60 5.27 -215.29 -1.13 -8.73 16 19 C 0.03 0.44 4.70 -4.98 -0.02 0.41 16 20 C 0.44 9.95 7.51 -10.99 -0.08 9.86 16 21 O -0.58 -14.62 13.72 5.54 0.08 -14.54 16 22 N -0.56 -13.80 5.29 -10.97 -0.06 -13.86 16 23 C -0.30 -8.12 9.68 -14.94 -0.14 -8.26 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 25 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 27 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.93 8.02 -51.93 -0.42 0.52 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 1.46 8.83 -40.82 -0.36 1.10 16 37 H 0.40 2.34 8.93 -40.82 -0.36 1.98 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.28 5.30 -51.93 -0.28 1.00 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.84 7.72 -51.93 -0.40 0.44 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.86 5.64 -51.93 -0.29 0.57 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -33.70 377.38 -7.73 -41.43 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -6.75 Total: 15.68 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -1.24 Total: 12.17 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.65 Total: -59.98 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: 0.25 Total: -30.75 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.70 -7.73 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481675823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.870 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds