Wall clock time and date at job start Tue Mar 31 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46540 * 2 1 4 4 C 1.52993 * 109.47143 * 240.00164 * 2 1 3 5 5 C 1.50698 * 109.47592 * 64.99454 * 4 2 1 6 6 N 1.34776 * 120.00070 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99707 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47054 * 119.99611 * 2 1 3 9 9 O 1.21287 * 119.99647 * 94.28298 * 8 2 1 10 10 N 1.34777 * 119.99932 * 274.28258 * 8 2 1 11 11 C 1.47858 * 126.92903 * 355.06220 * 10 8 2 12 12 C 1.56021 * 105.11392 * 181.89672 * 11 10 8 13 13 H 1.08995 * 116.26260 * 158.85072 * 12 11 10 14 14 C 1.57091 * 99.59594 * 32.80937 * 12 11 10 15 15 C 1.49281 * 126.92326 * 174.74667 * 10 8 2 16 16 H 1.09003 * 116.12505 * 16.89709 * 15 10 8 17 17 C 1.56011 * 104.12745 * 246.92877 * 15 10 8 18 18 N 1.49703 * 104.08572 * 287.95774 * 12 11 10 19 19 C 1.46898 * 110.99738 * 306.12042 * 18 12 11 20 20 C 1.50701 * 109.47246 * 301.64559 * 19 18 12 21 21 O 1.21286 * 119.99745 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99826 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00078 * 180.02562 * 22 20 19 24 24 H 1.08001 * 119.99542 * 359.97438 * 23 22 20 25 25 C 1.38947 * 120.00303 * 179.97438 * 23 22 20 26 26 N 1.31405 * 120.00019 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00026 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47261 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47149 * 120.00046 * 27 25 23 30 30 H 1.48501 * 109.47422 * 239.99873 * 27 25 23 31 31 H 1.08995 * 109.47073 * 304.79058 * 1 2 3 32 32 H 1.08997 * 109.47233 * 64.79197 * 1 2 3 33 33 H 1.09008 * 109.46755 * 184.78954 * 1 2 3 34 34 H 1.09005 * 109.47010 * 185.00215 * 4 2 1 35 35 H 1.09007 * 109.46791 * 304.99475 * 4 2 1 36 36 H 0.96997 * 120.00270 * 359.97438 * 6 5 4 37 37 H 0.97009 * 120.00000 * 180.02562 * 6 5 4 38 38 H 1.08999 * 110.31049 * 300.80820 * 11 10 8 39 39 H 1.09001 * 110.31162 * 62.98756 * 11 10 8 40 40 H 1.09000 * 112.36213 * 64.32983 * 14 12 11 41 41 H 1.09002 * 112.35911 * 191.66068 * 14 12 11 42 42 H 1.08996 * 110.32664 * 47.69739 * 17 15 10 43 43 H 1.09004 * 110.31907 * 169.79891 * 17 15 10 44 44 H 1.09003 * 109.46979 * 61.65106 * 19 18 12 45 45 H 1.09006 * 109.46915 * 181.64202 * 19 18 12 46 46 H 0.97003 * 120.00474 * 0.02562 * 22 20 19 47 47 H 0.97000 * 120.00164 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 7 1.9854 -0.3915 -3.7001 7 8 1.0116 1.0873 -2.3633 8 6 2.0324 -0.7103 1.2305 9 8 2.3085 -1.8902 1.1793 10 7 2.1748 -0.0344 2.3878 11 6 1.9830 1.4164 2.5987 12 6 2.3241 1.6576 4.1019 13 1 2.5905 2.6777 4.3783 14 6 3.4359 0.5651 4.2967 15 6 2.5518 -0.6008 3.7166 16 1 3.0016 -1.5936 3.7050 17 6 1.2694 -0.4180 4.5861 18 7 1.1693 1.0542 4.8390 19 6 -0.1060 1.6032 4.3594 20 6 -0.1067 3.0999 4.5358 21 8 0.8599 3.6545 5.0144 22 7 -1.1819 3.8219 4.1627 23 6 -1.1823 5.1835 4.3226 24 1 -0.3212 5.6774 4.7481 25 6 -2.2905 5.9279 3.9375 26 7 -3.3383 5.3269 3.4203 27 14 -2.2913 7.7830 4.1562 28 1 -1.0022 8.2114 4.7563 29 1 -2.4628 8.4373 2.8341 30 1 -3.4093 8.1755 5.0513 31 1 -0.3633 0.5863 0.8439 32 1 -0.3633 0.4377 -0.9298 33 1 -0.3633 -1.0242 0.0858 34 1 3.1264 -0.7994 -1.2055 35 1 1.6055 -1.7198 -1.2950 36 1 2.4899 -1.2149 -3.7907 37 1 1.7290 0.1096 -4.4902 38 1 2.6605 1.9842 1.9610 39 1 0.9488 1.6947 2.3960 40 1 4.3200 0.7602 3.6897 41 1 3.6878 0.4123 5.3462 42 1 0.3906 -0.7643 4.0421 43 1 1.3694 -0.9598 5.5266 44 1 -0.2316 1.3616 3.3039 45 1 -0.9263 1.1695 4.9314 46 1 -1.9554 3.3782 3.7809 47 1 -4.1118 5.8466 3.1511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481675824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:17 Heat of formation + Delta-G solvation = -65.958490 kcal Electronic energy + Delta-G solvation = -30751.371244 eV Core-core repulsion = 26549.319946 eV Total energy + Delta-G solvation = -4202.051298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27233 -40.00529 -38.75274 -37.80149 -34.35615 -34.14560 -33.95337 -33.47675 -31.38614 -30.82551 -29.66541 -28.06463 -26.59954 -25.32496 -24.38275 -23.61022 -21.43450 -20.65866 -20.16851 -19.29783 -18.51028 -17.93908 -17.82541 -17.34917 -16.69605 -16.40901 -16.01394 -15.69300 -15.38483 -15.08788 -14.55654 -14.51715 -14.05992 -13.88888 -13.78553 -13.60632 -13.30738 -12.83359 -12.78040 -12.66676 -12.44302 -12.10564 -12.02176 -11.76107 -11.57817 -11.45588 -11.39849 -11.32582 -11.22728 -11.15843 -11.01960 -10.87383 -10.34853 -10.24110 -10.18606 -9.98944 -9.73285 -9.51925 -8.71680 -8.39644 -8.02387 -7.93463 -6.43330 -3.84323 2.38505 2.53368 2.72507 3.15696 3.26913 3.31580 3.33391 3.84176 3.90781 4.19961 4.26058 4.41892 4.52150 4.63909 4.70992 4.75387 4.85968 5.01247 5.05675 5.20494 5.22176 5.31707 5.40753 5.41680 5.46873 5.51366 5.64346 5.75930 5.79640 5.81689 5.86806 5.90200 5.91213 6.06990 6.14887 6.21826 6.24018 6.40650 6.49533 6.93748 7.00468 7.15370 7.47082 7.53983 7.99173 8.03695 8.06088 8.58252 9.15790 9.51268 10.01782 10.74224 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.003602 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.915659 B = 7772.483826 C = 9899.116805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.099 0.901 4 C -0.124 4.124 5 C 0.516 3.484 6 N -0.858 5.858 7 O -0.533 6.533 8 C 0.539 3.461 9 O -0.550 6.550 10 N -0.617 5.617 11 C 0.054 3.946 12 C 0.070 3.930 13 H 0.156 0.844 14 C -0.138 4.138 15 C 0.108 3.892 16 H 0.125 0.875 17 C 0.025 3.975 18 N -0.491 5.491 19 C 0.030 3.970 20 C 0.443 3.557 21 O -0.581 6.581 22 N -0.560 5.560 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.024 3.976 26 N -0.899 5.899 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.401 0.599 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.652 -14.975 -9.354 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.117 0.883 4 C -0.165 4.165 5 C 0.301 3.699 6 N -0.422 5.422 7 O -0.409 6.409 8 C 0.328 3.672 9 O -0.429 6.429 10 N -0.351 5.351 11 C -0.070 4.070 12 C -0.038 4.038 13 H 0.173 0.827 14 C -0.176 4.176 15 C 0.005 3.995 16 H 0.143 0.857 17 C -0.104 4.104 18 N -0.215 5.215 19 C -0.102 4.102 20 C 0.228 3.772 21 O -0.466 6.466 22 N -0.196 5.196 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.178 4.178 26 N -0.540 5.540 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.229 0.771 37 H 0.232 0.768 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.824 -14.415 -8.373 19.876 hybrid contribution -0.695 0.289 -1.544 1.718 sum 10.129 -14.126 -9.917 20.012 Atomic orbital electron populations 1.21834 0.91688 1.02190 1.04539 1.20975 0.98776 1.00732 0.90843 0.88291 1.21468 1.03261 1.00510 0.91225 1.20661 0.78553 0.85406 0.85235 1.43886 1.60371 1.29643 1.08321 1.90777 1.39231 1.24328 1.86611 1.20261 0.76853 0.86709 0.83404 1.90665 1.51545 1.15876 1.84792 1.49351 1.68064 1.09421 1.08289 1.23492 1.02915 0.80303 1.00255 1.24914 0.90332 1.00817 0.87694 0.82679 1.24048 0.97004 0.94458 1.02087 1.24116 0.95609 0.98639 0.81114 0.85707 1.23967 0.96879 0.90361 0.99213 1.65138 1.01557 1.01703 1.53099 1.22213 0.92938 0.95929 0.99085 1.19604 0.85023 0.87471 0.85057 1.90455 1.34891 1.72014 1.49226 1.41866 1.15315 1.07642 1.54799 1.19737 1.02560 0.81596 1.38976 0.87775 1.25265 0.95069 1.00690 0.96820 1.69615 1.05607 1.36737 1.42063 0.85813 0.78465 0.82212 0.77930 1.19183 1.20754 1.20753 0.91998 0.89448 0.92567 0.88506 0.87658 0.77059 0.76826 0.90819 0.89723 0.90056 0.88662 0.92232 0.89196 0.92852 0.89203 0.77494 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.96 37.16 0.33 -1.50 16 2 C -0.09 -1.11 1.97 -91.77 -0.18 -1.29 16 3 H 0.10 1.27 7.17 -51.93 -0.37 0.90 16 4 C -0.12 -1.19 4.63 -27.89 -0.13 -1.32 16 5 C 0.52 5.25 7.78 -10.99 -0.09 5.17 16 6 N -0.86 -5.21 8.87 31.22 0.28 -4.93 16 7 O -0.53 -7.76 14.82 5.55 0.08 -7.68 16 8 C 0.54 7.33 6.99 -10.98 -0.08 7.25 16 9 O -0.55 -8.59 16.55 5.55 0.09 -8.50 16 10 N -0.62 -8.14 2.95 -156.60 -0.46 -8.60 16 11 C 0.05 0.76 5.26 -1.68 -0.01 0.75 16 12 C 0.07 1.06 4.12 -62.31 -0.26 0.80 16 13 H 0.16 2.74 6.34 -51.93 -0.33 2.41 16 14 C -0.14 -1.61 6.84 -22.11 -0.15 -1.76 16 15 C 0.11 1.31 5.25 -62.38 -0.33 0.98 16 16 H 0.13 1.41 8.04 -51.93 -0.42 0.99 16 17 C 0.02 0.32 6.34 -0.64 0.00 0.31 16 18 N -0.49 -7.78 5.21 -216.93 -1.13 -8.91 16 19 C 0.03 0.52 4.74 -4.98 -0.02 0.50 16 20 C 0.44 9.95 7.44 -10.98 -0.08 9.87 16 21 O -0.58 -14.59 13.56 5.55 0.08 -14.52 16 22 N -0.56 -13.78 5.29 -10.97 -0.06 -13.84 16 23 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 24 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 25 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 26 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 27 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 32 H 0.09 1.18 5.88 -51.93 -0.31 0.88 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.93 8.03 -51.93 -0.42 0.51 16 36 H 0.40 1.23 8.83 -40.82 -0.36 0.87 16 37 H 0.40 2.14 8.93 -40.82 -0.36 1.78 16 38 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 39 H 0.08 1.33 4.86 -51.93 -0.25 1.08 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.88 5.66 -51.93 -0.29 0.58 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -33.65 376.12 -7.69 -41.34 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -6.70 Total: 15.70 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -1.23 Total: 12.00 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.65 Total: -59.83 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: 0.25 Total: -30.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.65 -7.69 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481675824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.616 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds