Wall clock time and date at job start Tue Mar 31 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46540 * 2 1 4 4 C 1.52993 * 109.47143 * 240.00164 * 2 1 3 5 5 C 1.50698 * 109.47592 * 64.99454 * 4 2 1 6 6 N 1.34776 * 120.00070 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99707 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47054 * 119.99611 * 2 1 3 9 9 O 1.21287 * 119.99647 * 94.28298 * 8 2 1 10 10 N 1.34777 * 119.99932 * 274.28258 * 8 2 1 11 11 C 1.47858 * 126.92903 * 355.06220 * 10 8 2 12 12 C 1.56021 * 105.11392 * 181.89672 * 11 10 8 13 13 H 1.08995 * 116.26260 * 158.85072 * 12 11 10 14 14 C 1.57091 * 99.59594 * 32.80937 * 12 11 10 15 15 C 1.49281 * 126.92326 * 174.74667 * 10 8 2 16 16 H 1.09003 * 116.12505 * 16.89709 * 15 10 8 17 17 C 1.56011 * 104.12745 * 246.92877 * 15 10 8 18 18 N 1.49703 * 104.08572 * 287.95774 * 12 11 10 19 19 C 1.46898 * 110.99738 * 306.12042 * 18 12 11 20 20 C 1.50701 * 109.47246 * 301.64559 * 19 18 12 21 21 O 1.21286 * 119.99745 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99826 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00078 * 180.02562 * 22 20 19 24 24 H 1.08001 * 119.99542 * 359.97438 * 23 22 20 25 25 C 1.38947 * 120.00303 * 179.97438 * 23 22 20 26 26 N 1.31405 * 120.00019 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00026 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47261 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47149 * 120.00046 * 27 25 23 30 30 H 1.48501 * 109.47422 * 239.99873 * 27 25 23 31 31 H 1.08995 * 109.47073 * 304.79058 * 1 2 3 32 32 H 1.08997 * 109.47233 * 64.79197 * 1 2 3 33 33 H 1.09008 * 109.46755 * 184.78954 * 1 2 3 34 34 H 1.09005 * 109.47010 * 185.00215 * 4 2 1 35 35 H 1.09007 * 109.46791 * 304.99475 * 4 2 1 36 36 H 0.96997 * 120.00270 * 359.97438 * 6 5 4 37 37 H 0.97009 * 120.00000 * 180.02562 * 6 5 4 38 38 H 1.08999 * 110.31049 * 300.80820 * 11 10 8 39 39 H 1.09001 * 110.31162 * 62.98756 * 11 10 8 40 40 H 1.09000 * 112.36213 * 64.32983 * 14 12 11 41 41 H 1.09002 * 112.35911 * 191.66068 * 14 12 11 42 42 H 1.08996 * 110.32664 * 47.69739 * 17 15 10 43 43 H 1.09004 * 110.31907 * 169.79891 * 17 15 10 44 44 H 1.09003 * 109.46979 * 61.65106 * 19 18 12 45 45 H 1.09006 * 109.46915 * 181.64202 * 19 18 12 46 46 H 0.97003 * 120.00474 * 0.02562 * 22 20 19 47 47 H 0.97000 * 120.00164 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 7 1.9854 -0.3915 -3.7001 7 8 1.0116 1.0873 -2.3633 8 6 2.0324 -0.7103 1.2305 9 8 2.3085 -1.8902 1.1793 10 7 2.1748 -0.0344 2.3878 11 6 1.9830 1.4164 2.5987 12 6 2.3241 1.6576 4.1019 13 1 2.5905 2.6777 4.3783 14 6 3.4359 0.5651 4.2967 15 6 2.5518 -0.6008 3.7166 16 1 3.0016 -1.5936 3.7050 17 6 1.2694 -0.4180 4.5861 18 7 1.1693 1.0542 4.8390 19 6 -0.1060 1.6032 4.3594 20 6 -0.1067 3.0999 4.5358 21 8 0.8599 3.6545 5.0144 22 7 -1.1819 3.8219 4.1627 23 6 -1.1823 5.1835 4.3226 24 1 -0.3212 5.6774 4.7481 25 6 -2.2905 5.9279 3.9375 26 7 -3.3383 5.3269 3.4203 27 14 -2.2913 7.7830 4.1562 28 1 -1.0022 8.2114 4.7563 29 1 -2.4628 8.4373 2.8341 30 1 -3.4093 8.1755 5.0513 31 1 -0.3633 0.5863 0.8439 32 1 -0.3633 0.4377 -0.9298 33 1 -0.3633 -1.0242 0.0858 34 1 3.1264 -0.7994 -1.2055 35 1 1.6055 -1.7198 -1.2950 36 1 2.4899 -1.2149 -3.7907 37 1 1.7290 0.1096 -4.4902 38 1 2.6605 1.9842 1.9610 39 1 0.9488 1.6947 2.3960 40 1 4.3200 0.7602 3.6897 41 1 3.6878 0.4123 5.3462 42 1 0.3906 -0.7643 4.0421 43 1 1.3694 -0.9598 5.5266 44 1 -0.2316 1.3616 3.3039 45 1 -0.9263 1.1695 4.9314 46 1 -1.9554 3.3782 3.7809 47 1 -4.1118 5.8466 3.1511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481675824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:16 Heat of formation + Delta-G solvation = -94.024925 kcal Electronic energy + Delta-G solvation = -30752.588296 eV Core-core repulsion = 26549.319946 eV Total energy + Delta-G solvation = -4203.268350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40488 -40.93544 -40.04571 -39.35910 -36.01624 -35.34301 -34.81233 -34.66419 -33.28830 -32.08668 -30.77673 -28.94696 -28.16082 -26.42307 -26.05002 -24.75838 -22.35669 -21.87888 -21.14363 -20.90625 -19.94548 -19.45028 -18.87569 -18.07689 -17.89593 -17.55439 -17.40475 -16.80553 -16.61757 -16.28882 -16.15889 -15.80202 -15.63975 -15.13766 -15.02182 -14.78039 -14.47421 -14.11323 -13.93263 -13.83037 -13.68484 -13.49986 -13.17850 -13.10308 -12.99069 -12.89914 -12.61898 -12.48343 -12.38120 -12.31239 -12.27336 -12.12783 -12.09859 -12.00616 -11.46263 -11.11017 -10.85112 -10.60969 -10.21268 -9.99182 -9.83298 -9.22578 -8.45281 -5.93468 1.37042 1.42690 1.44864 1.56485 1.60861 1.70895 2.04711 2.28424 2.59950 2.69629 3.20700 3.24330 3.30259 3.44821 3.49413 3.69420 3.76107 3.86749 3.96626 4.01098 4.12922 4.25980 4.31705 4.36579 4.40097 4.53018 4.56945 4.60836 4.61109 4.72400 4.77266 4.81313 4.91333 4.92680 5.00463 5.14719 5.15144 5.21233 5.43139 5.73804 5.82883 5.90433 6.06447 6.38074 6.44176 6.60533 6.97868 7.14098 7.34376 7.56855 8.11164 8.72395 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.003602 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.915659 B = 7772.483826 C = 9899.116805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.118 4.118 5 C 0.516 3.484 6 N -0.836 5.836 7 O -0.585 6.585 8 C 0.542 3.458 9 O -0.566 6.566 10 N -0.615 5.615 11 C 0.063 3.937 12 C 0.059 3.941 13 H 0.125 0.875 14 C -0.120 4.120 15 C 0.113 3.887 16 H 0.143 0.857 17 C 0.028 3.972 18 N -0.505 5.505 19 C 0.043 3.957 20 C 0.446 3.554 21 O -0.608 6.608 22 N -0.573 5.573 23 C -0.327 4.327 24 H 0.083 0.917 25 C -0.014 4.014 26 N -0.922 5.922 27 Si 0.991 3.009 28 H -0.270 1.270 29 H -0.274 1.274 30 H -0.273 1.273 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.419 0.581 37 H 0.408 0.592 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.393 0.607 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.655 -16.632 -9.860 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.106 0.894 4 C -0.158 4.158 5 C 0.301 3.699 6 N -0.400 5.400 7 O -0.465 6.465 8 C 0.332 3.668 9 O -0.446 6.446 10 N -0.349 5.349 11 C -0.061 4.061 12 C -0.049 4.049 13 H 0.143 0.857 14 C -0.158 4.158 15 C 0.010 3.990 16 H 0.161 0.839 17 C -0.100 4.100 18 N -0.230 5.230 19 C -0.088 4.088 20 C 0.234 3.766 21 O -0.494 6.494 22 N -0.210 5.210 23 C -0.457 4.457 24 H 0.101 0.899 25 C -0.213 4.213 26 N -0.563 5.563 27 Si 0.815 3.185 28 H -0.195 1.195 29 H -0.199 1.199 30 H -0.198 1.198 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.250 0.750 37 H 0.239 0.761 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.854 -16.131 -8.906 21.910 hybrid contribution -0.938 0.735 -1.394 1.834 sum 10.916 -15.396 -10.300 21.500 Atomic orbital electron populations 1.21745 0.92266 1.02239 1.03353 1.20953 0.98243 1.00402 0.91641 0.89410 1.21440 1.04260 1.00399 0.89689 1.20770 0.77982 0.84733 0.86381 1.43702 1.59093 1.29959 1.07285 1.90766 1.41798 1.26563 1.87365 1.20404 0.76377 0.86434 0.83634 1.90656 1.52402 1.16457 1.85066 1.49370 1.67808 1.08876 1.08835 1.23276 1.01814 0.81122 0.99882 1.24742 0.91659 1.00483 0.88053 0.85739 1.23992 0.96216 0.92422 1.03157 1.24253 0.95205 0.99395 0.80120 0.83943 1.24031 0.97249 0.88196 1.00498 1.65148 1.00740 1.03603 1.53461 1.22043 0.94650 0.91982 1.00152 1.20471 0.83678 0.89525 0.82956 1.90443 1.35698 1.73377 1.49883 1.41935 1.16122 1.07153 1.55823 1.19696 1.02523 0.83067 1.40392 0.89913 1.26021 0.94434 1.04725 0.96159 1.69682 1.05993 1.38220 1.42401 0.84895 0.78359 0.77110 0.78149 1.19473 1.19919 1.19788 0.93422 0.90428 0.91728 0.86797 0.86461 0.74996 0.76094 0.90302 0.91698 0.88725 0.87447 0.92492 0.87068 0.91739 0.87879 0.77313 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.96 71.98 0.64 -2.85 16 2 C -0.09 -2.13 1.97 -11.54 -0.02 -2.16 16 3 H 0.09 2.27 7.17 -2.39 -0.02 2.25 16 4 C -0.12 -2.05 4.63 29.85 0.14 -1.91 16 5 C 0.52 9.93 7.78 87.66 0.68 10.61 16 6 N -0.84 -8.53 8.87 -173.53 -1.54 -10.07 16 7 O -0.58 -17.13 14.82 -3.04 -0.05 -17.17 16 8 C 0.54 13.86 6.99 87.66 0.61 14.47 16 9 O -0.57 -16.33 16.55 -3.05 -0.05 -16.38 16 10 N -0.62 -15.30 2.95 -767.74 -2.26 -17.56 16 11 C 0.06 1.77 5.26 87.17 0.46 2.23 16 12 C 0.06 1.75 4.12 46.85 0.19 1.94 16 13 H 0.13 4.54 6.34 -2.39 -0.02 4.52 16 14 C -0.12 -2.55 6.84 33.59 0.23 -2.32 16 15 C 0.11 2.43 5.25 47.05 0.25 2.68 16 16 H 0.14 2.70 8.04 -2.39 -0.02 2.68 16 17 C 0.03 0.66 6.34 86.80 0.55 1.21 16 18 N -0.51 -15.58 5.21 -840.24 -4.38 -19.96 16 19 C 0.04 1.50 4.74 85.56 0.41 1.90 16 20 C 0.45 20.58 7.44 87.66 0.65 21.24 16 21 O -0.61 -31.55 13.56 -3.05 -0.04 -31.59 16 22 N -0.57 -29.11 5.29 -306.99 -1.62 -30.74 16 23 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 24 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 25 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 26 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 27 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 30 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 31 H 0.05 1.30 7.82 -2.39 -0.02 1.28 16 32 H 0.08 2.14 5.88 -2.39 -0.01 2.13 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.12 1.79 8.03 -2.38 -0.02 1.77 16 36 H 0.42 1.43 8.83 -92.71 -0.82 0.61 16 37 H 0.41 3.66 8.93 -92.70 -0.83 2.83 16 38 H 0.08 2.11 8.00 -2.39 -0.02 2.09 16 39 H 0.07 2.09 4.86 -2.39 -0.01 2.08 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 2.13 5.66 -2.39 -0.01 2.12 16 45 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 46 H 0.39 19.38 7.90 -92.71 -0.73 18.65 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -73.69 376.12 -2.89 -76.58 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -1.33 Total: 42.45 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 6.07 Total: 29.24 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -9.52 Total: -128.22 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -0.14 Total: -65.14 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -73.69 -2.89 -76.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481675824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.447 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds