Wall clock time and date at job start Tue Mar 31 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35553 * 117.00033 * 2 1 4 4 C 1.39193 * 120.44480 * 179.97438 * 3 2 1 5 5 C 1.39187 * 118.41175 * 180.02562 * 4 3 2 6 6 O 1.35552 * 120.44225 * 180.02562 * 5 4 3 7 7 C 1.42895 * 116.99853 * 179.97438 * 6 5 4 8 8 N 1.32743 * 119.11430 * 359.97438 * 5 4 3 9 9 C 1.32428 * 120.81015 * 0.02562 * 8 5 4 10 10 C 1.48553 * 119.12819 * 179.97438 * 9 8 5 11 11 O 1.21465 * 120.00156 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99859 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00226 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.47414 * 325.00262 * 13 12 10 15 15 C 1.53001 * 109.47372 * 85.00029 * 13 12 10 16 16 C 1.52996 * 109.47485 * 205.00306 * 13 12 10 17 17 C 1.52997 * 109.47131 * 64.99753 * 16 13 12 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 13 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 16 20 20 C 1.36937 * 119.99946 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00046 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00249 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99665 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47526 * 90.00052 * 24 22 20 26 26 H 1.48501 * 109.46999 * 210.00283 * 24 22 20 27 27 H 1.48504 * 109.47063 * 330.00048 * 24 22 20 28 28 N 1.32421 * 121.73852 * 0.24308 * 9 8 5 29 29 H 1.08998 * 109.46888 * 60.00311 * 1 2 3 30 30 H 1.09004 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47592 * 299.99997 * 1 2 3 32 32 H 1.08005 * 120.79114 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.47454 * 59.99375 * 7 6 5 34 34 H 1.09001 * 109.47156 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.47099 * 299.99712 * 7 6 5 36 36 H 0.97003 * 119.99985 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47849 * 180.02562 * 15 13 12 38 38 H 1.09002 * 109.47074 * 300.00417 * 15 13 12 39 39 H 1.09007 * 109.47124 * 60.00031 * 15 13 12 40 40 H 1.09001 * 109.46993 * 304.99622 * 16 13 12 41 41 H 1.09004 * 109.47298 * 185.00036 * 16 13 12 42 42 H 1.09001 * 109.46832 * 60.00325 * 17 16 13 43 43 H 1.08993 * 109.47194 * 299.99846 * 17 16 13 44 44 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 45 45 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 46 46 H 0.96998 * 120.00192 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99952 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4338 1.2914 0.0005 5 6 4.0213 2.5532 0.0011 6 8 5.3706 2.6825 0.0011 7 6 5.8949 4.0118 0.0011 8 7 3.2426 3.6282 0.0005 9 6 1.9236 3.5103 0.0000 10 6 1.0878 4.7385 0.0000 11 8 1.6157 5.8324 0.0009 12 7 -0.2563 4.6389 -0.0011 13 6 -1.0806 5.8499 -0.0005 14 1 -0.5895 6.6235 0.5900 15 6 -1.2626 6.3436 -1.4372 16 6 -2.4487 5.5355 0.6079 17 6 -2.2777 5.1615 2.0816 18 6 -3.6459 4.8465 2.6898 19 7 -3.4822 4.4890 4.1011 20 6 -4.5772 4.1647 4.8567 21 1 -5.5615 4.1721 4.4121 22 6 -4.4222 3.8255 6.1938 23 7 -3.2226 3.8161 6.7354 24 14 -5.9158 3.3825 7.2242 25 1 -6.1603 1.9203 7.1387 26 1 -5.6712 3.7615 8.6391 27 1 -7.1036 4.1136 6.7143 28 7 1.3300 2.3266 0.0048 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0414 0.3985 0.0005 33 1 5.5501 4.5385 0.8910 34 1 6.9842 3.9728 0.0015 35 1 5.5502 4.5384 -0.8890 36 1 -0.6779 3.7652 -0.0014 37 1 -1.8755 7.2450 -1.4368 38 1 -0.2879 6.5677 -1.8706 39 1 -1.7537 5.5701 -2.0278 40 1 -2.9018 4.7016 0.0716 41 1 -3.0921 6.4117 0.5276 42 1 -1.8247 5.9954 2.6177 43 1 -1.6344 4.2854 2.1618 44 1 -4.2896 5.7224 2.6095 45 1 -4.0986 4.0125 2.1535 46 1 -2.5981 4.4813 4.5001 47 1 -3.1142 3.5787 7.6696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485728454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:57 Heat of formation + Delta-G solvation = -50.993796 kcal Electronic energy + Delta-G solvation = -29161.156682 eV Core-core repulsion = 24959.754302 eV Total energy + Delta-G solvation = -4201.402380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86084 -39.87595 -39.53971 -38.06857 -36.76654 -34.87807 -33.29793 -32.63360 -32.20059 -30.98050 -29.39622 -28.32539 -27.31944 -25.98659 -25.52459 -23.55203 -23.06826 -21.85441 -20.83168 -20.66904 -19.48675 -18.89462 -17.38197 -17.00453 -16.94899 -16.86240 -16.33431 -16.08850 -15.92641 -15.30598 -15.12153 -14.69230 -14.60739 -14.36600 -14.16104 -13.99113 -13.67387 -13.44031 -13.00387 -12.70965 -12.49419 -12.26660 -12.22797 -12.17098 -12.10768 -11.68781 -11.48720 -11.31746 -11.17509 -10.85882 -10.80271 -10.48810 -10.40385 -10.19119 -10.06960 -10.04401 -10.00371 -9.68229 -9.41120 -9.17473 -8.85709 -6.90345 -5.74975 -3.03696 0.14690 0.79073 2.06718 2.43665 2.55016 2.90071 3.43732 3.48598 3.50763 3.51461 3.55561 3.93005 4.46423 4.56724 4.68702 4.73359 4.92596 4.95937 4.98974 5.00814 5.03339 5.05103 5.11835 5.13898 5.35222 5.41706 5.46614 5.54296 5.58551 5.61564 5.76426 5.93690 6.05492 6.09682 6.20059 6.31957 6.35925 6.38333 6.42069 6.53399 6.74024 6.87833 6.91053 7.19531 7.57074 7.70605 7.98222 8.44035 9.54730 10.14131 10.48241 11.47997 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010215 B = 0.002612 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.355066 B =10718.451341 C =11767.568598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.293 6.293 3 C 0.390 3.610 4 C -0.251 4.251 5 C 0.386 3.614 6 O -0.294 6.294 7 C 0.035 3.965 8 N -0.543 5.543 9 C 0.367 3.633 10 C 0.587 3.413 11 O -0.502 6.502 12 N -0.695 5.695 13 C 0.141 3.859 14 H 0.093 0.907 15 C -0.163 4.163 16 C -0.122 4.122 17 C -0.127 4.127 18 C 0.154 3.846 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 N -0.567 5.567 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.991 -3.537 -20.767 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.197 6.197 3 C 0.206 3.794 4 C -0.275 4.275 5 C 0.201 3.799 6 O -0.198 6.198 7 C -0.060 4.060 8 N -0.278 5.278 9 C 0.095 3.905 10 C 0.367 3.633 11 O -0.374 6.374 12 N -0.348 5.348 13 C 0.037 3.963 14 H 0.111 0.889 15 C -0.221 4.221 16 C -0.160 4.160 17 C -0.165 4.165 18 C 0.026 3.974 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 N -0.304 5.304 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.014 -2.462 -20.702 25.121 hybrid contribution -0.377 -1.259 0.854 1.567 sum 13.637 -3.720 -19.848 24.367 Atomic orbital electron populations 1.23117 0.75527 1.04108 1.03454 1.86252 1.24161 1.22915 1.86364 1.19541 0.88510 0.84785 0.86609 1.20803 0.92816 0.98414 1.15447 1.19572 0.84947 0.88384 0.86969 1.86240 1.14674 1.32366 1.86529 1.23065 0.98895 0.80441 1.03556 1.67892 1.06091 1.32522 1.21271 1.22237 0.86971 0.90731 0.90522 1.17148 0.82214 0.85901 0.78046 1.90808 1.72649 1.26038 1.47917 1.45894 1.04698 1.11206 1.73014 1.21180 0.91383 0.86730 0.97011 0.88910 1.22182 1.02315 1.01516 0.96087 1.21854 0.94869 1.02717 0.96610 1.21752 0.99176 1.01670 0.93925 1.20640 0.93602 0.96671 0.86491 1.42386 1.07577 1.82563 1.05348 1.19239 0.87910 1.38027 0.91843 0.91218 1.24756 0.96595 1.02731 0.97070 1.69666 1.20425 1.55263 1.12899 0.86186 0.82054 0.78118 0.79823 1.21752 1.21767 1.20762 1.67997 1.41245 0.98355 1.22843 0.91647 0.87719 0.91026 0.81833 0.91391 0.87894 0.91549 0.75189 0.91210 0.92232 0.92350 0.91239 0.89961 0.91874 0.92016 0.96482 0.96567 0.78348 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.41 101.05 1.05 1.31 16 2 O -0.29 -2.93 10.49 -18.35 -0.19 -3.12 16 3 C 0.39 4.37 7.52 -16.80 -0.13 4.25 16 4 C -0.25 -2.62 10.09 -38.87 -0.39 -3.01 16 5 C 0.39 4.50 7.52 -16.81 -0.13 4.37 16 6 O -0.29 -2.98 10.49 -18.35 -0.19 -3.18 16 7 C 0.04 0.28 10.41 101.05 1.05 1.33 16 8 N -0.54 -7.34 9.06 -11.24 -0.10 -7.44 16 9 C 0.37 4.95 7.60 -157.13 -1.19 3.76 16 10 C 0.59 8.23 7.82 -12.00 -0.09 8.13 16 11 O -0.50 -8.37 16.52 5.40 0.09 -8.28 16 12 N -0.69 -8.16 4.52 -54.53 -0.25 -8.40 16 13 C 0.14 1.58 2.57 -67.94 -0.17 1.40 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 15 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 16 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 17 C -0.13 -1.99 5.22 -26.73 -0.14 -2.13 16 18 C 0.15 3.05 6.26 -4.04 -0.03 3.02 16 19 N -0.73 -18.98 5.60 -59.91 -0.34 -19.31 16 20 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 N -0.57 -6.82 8.51 -11.24 -0.10 -6.91 16 29 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.41 4.36 7.90 -40.82 -0.32 4.04 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -34.41 403.26 -6.80 -41.21 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.31 Total: 7.56 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.19 Total: 12.23 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -0.05 Total: -70.05 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.30 Total: -14.58 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.41 -6.80 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485728454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.781 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds