Wall clock time and date at job start Tue Mar 31 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35549 * 116.99697 * 2 1 4 4 C 1.39188 * 120.44328 * 179.97438 * 3 2 1 5 5 C 1.39193 * 118.41453 * 179.97438 * 4 3 2 6 6 O 1.35544 * 120.44364 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99949 * 179.97438 * 6 5 4 8 8 N 1.32742 * 119.10672 * 359.97438 * 5 4 3 9 9 C 1.32425 * 120.81985 * 0.02562 * 8 5 4 10 10 C 1.48551 * 119.13386 * 179.97438 * 9 8 5 11 11 O 1.21468 * 119.99863 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99866 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99771 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47391 * 34.99730 * 13 12 10 15 15 C 1.53002 * 109.46799 * 274.99826 * 13 12 10 16 16 C 1.53000 * 109.46840 * 155.00060 * 13 12 10 17 17 C 1.53005 * 109.46867 * 294.99527 * 16 13 12 18 18 C 1.53008 * 109.46774 * 180.02562 * 17 16 13 19 19 N 1.46497 * 109.46734 * 179.97438 * 18 17 16 20 20 C 1.36943 * 119.99762 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99644 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99581 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00547 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99493 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46932 * 60.00623 * 24 22 20 26 26 H 1.48503 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47549 * 300.00356 * 24 22 20 28 28 N 1.32423 * 121.73032 * 0.25141 * 9 8 5 29 29 H 1.08997 * 109.47403 * 60.00512 * 1 2 3 30 30 H 1.09004 * 109.46663 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47425 * 300.00232 * 1 2 3 32 32 H 1.08000 * 120.79066 * 359.95537 * 4 3 2 33 33 H 1.09001 * 109.47536 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.47334 * 299.99997 * 7 6 5 35 35 H 1.09001 * 109.47080 * 59.99671 * 7 6 5 36 36 H 0.96998 * 119.99599 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.46986 * 180.02562 * 15 13 12 38 38 H 1.09002 * 109.47075 * 299.99543 * 15 13 12 39 39 H 1.08996 * 109.47407 * 60.00500 * 15 13 12 40 40 H 1.08990 * 109.47170 * 54.99738 * 16 13 12 41 41 H 1.09001 * 109.46952 * 174.99815 * 16 13 12 42 42 H 1.09000 * 109.47443 * 300.00098 * 17 16 13 43 43 H 1.09001 * 109.47099 * 60.00379 * 17 16 13 44 44 H 1.09000 * 109.47044 * 300.00132 * 18 17 16 45 45 H 1.09001 * 109.47171 * 60.00211 * 18 17 16 46 46 H 0.97003 * 120.00464 * 0.02562 * 19 18 17 47 47 H 0.96996 * 120.00496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 6 3.4337 1.2915 0.0005 5 6 4.0213 2.5533 0.0000 6 8 5.3705 2.6826 -0.0001 7 6 5.8948 4.0120 -0.0012 8 7 3.2424 3.6282 -0.0016 9 6 1.9234 3.5104 -0.0021 10 6 1.0876 4.7385 -0.0032 11 8 1.6156 5.8324 -0.0033 12 7 -0.2565 4.6388 -0.0032 13 6 -1.0807 5.8499 -0.0049 14 1 -0.5892 6.6232 -0.5953 15 6 -1.2639 6.3441 1.4314 16 6 -2.4484 5.5351 -0.6143 17 6 -2.2762 5.1606 -2.0877 18 6 -3.6440 4.8464 -2.6972 19 7 -3.4792 4.4884 -4.1082 20 6 -4.5738 4.1647 -4.8648 21 1 -5.5584 4.1737 -4.4214 22 6 -4.4175 3.8250 -6.2016 23 7 -3.2174 3.8136 -6.7419 24 14 -5.9107 3.3842 -7.2339 25 1 -6.8492 4.5348 -7.2634 26 1 -5.4784 3.0631 -8.6178 27 1 -6.5916 2.2051 -6.6413 28 7 1.3300 2.3266 0.0039 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0413 0.3986 0.0017 33 1 6.9841 3.9730 -0.0007 34 1 5.5502 4.5377 -0.8918 35 1 5.5500 4.5393 0.8882 36 1 -0.6780 3.7652 -0.0028 37 1 -1.8775 7.2450 1.4302 38 1 -1.7555 5.5709 2.0218 39 1 -0.2896 6.5684 1.8655 40 1 -2.9018 4.7015 -0.0781 41 1 -3.0919 6.4113 -0.5349 42 1 -1.8227 5.9942 -2.6240 43 1 -1.6327 4.2844 -2.1671 44 1 -4.0979 4.0129 -2.1611 45 1 -4.2872 5.7228 -2.6179 46 1 -2.5947 4.4800 -4.5064 47 1 -3.1082 3.5758 -7.6759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485728455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:01 Heat of formation + Delta-G solvation = -50.887477 kcal Electronic energy + Delta-G solvation = -29160.323193 eV Core-core repulsion = 24958.925423 eV Total energy + Delta-G solvation = -4201.397770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86072 -39.87535 -39.54004 -38.06848 -36.76533 -34.87595 -33.29718 -32.63309 -32.19996 -30.98024 -29.39527 -28.32563 -27.31970 -25.98605 -25.52355 -23.55187 -23.06619 -21.85361 -20.83061 -20.66930 -19.48660 -18.89441 -17.38185 -17.00291 -16.94960 -16.86177 -16.33440 -16.08853 -15.92613 -15.30297 -15.12241 -14.69125 -14.60685 -14.36525 -14.16182 -13.99064 -13.67521 -13.43534 -13.00555 -12.70777 -12.49425 -12.26608 -12.22654 -12.17177 -12.10658 -11.68825 -11.48574 -11.31587 -11.17423 -10.84187 -10.80406 -10.49248 -10.40828 -10.19187 -10.07442 -10.03825 -10.02336 -9.67796 -9.41096 -9.17411 -8.85154 -6.90302 -5.74672 -3.03496 0.14731 0.79113 2.06739 2.43737 2.55005 2.90093 3.44405 3.48498 3.49958 3.51487 3.55578 3.93013 4.46480 4.56863 4.68743 4.73430 4.92600 4.95961 4.99029 5.00850 5.03405 5.05092 5.11850 5.13953 5.35220 5.41731 5.46610 5.54369 5.58635 5.61687 5.76470 5.93743 6.05575 6.09762 6.20129 6.31990 6.36023 6.38371 6.42154 6.53411 6.74056 6.87915 6.91151 7.19568 7.57121 7.70298 7.98256 8.44330 9.54928 10.14331 10.48440 11.48234 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010216 B = 0.002611 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.128380 B =10722.388017 C =11769.722681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.293 6.293 3 C 0.390 3.610 4 C -0.251 4.251 5 C 0.386 3.614 6 O -0.294 6.294 7 C 0.035 3.965 8 N -0.543 5.543 9 C 0.367 3.633 10 C 0.587 3.413 11 O -0.502 6.502 12 N -0.695 5.695 13 C 0.141 3.859 14 H 0.093 0.907 15 C -0.163 4.163 16 C -0.122 4.122 17 C -0.127 4.127 18 C 0.154 3.846 19 N -0.735 5.735 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 N -0.567 5.567 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 -3.560 20.727 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.197 6.197 3 C 0.206 3.794 4 C -0.275 4.275 5 C 0.201 3.799 6 O -0.198 6.198 7 C -0.060 4.060 8 N -0.278 5.278 9 C 0.096 3.904 10 C 0.367 3.633 11 O -0.374 6.374 12 N -0.348 5.348 13 C 0.037 3.963 14 H 0.111 0.889 15 C -0.221 4.221 16 C -0.161 4.161 17 C -0.165 4.165 18 C 0.026 3.974 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 N -0.305 5.305 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.182 0.818 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.020 -2.495 20.669 25.100 hybrid contribution -0.388 -1.244 -0.850 1.556 sum 13.632 -3.739 19.820 24.344 Atomic orbital electron populations 1.23117 0.75525 1.04107 1.03456 1.86253 1.24163 1.22913 1.86363 1.19537 0.88509 0.84785 0.86604 1.20802 0.92818 0.98413 1.15457 1.19571 0.84946 0.88382 0.86963 1.86238 1.14675 1.32368 1.86525 1.23065 0.98896 0.80439 1.03557 1.67886 1.06094 1.32534 1.21275 1.22235 0.86968 0.90728 0.90514 1.17148 0.82215 0.85901 0.78046 1.90809 1.72649 1.26038 1.47919 1.45894 1.04698 1.11206 1.73012 1.21183 0.91385 0.86724 0.97011 0.88908 1.22182 1.02307 1.01520 0.96091 1.21854 0.94874 1.02715 0.96608 1.21754 0.99176 1.01669 0.93921 1.20640 0.93601 0.96667 0.86494 1.42381 1.07548 1.82587 1.05352 1.19195 0.87881 1.38172 0.91862 0.91268 1.24751 0.96579 1.02701 0.97066 1.69649 1.20416 1.55210 1.13007 0.86265 0.82064 0.78249 0.79589 1.21264 1.21686 1.21290 1.67995 1.41247 0.98356 1.22859 0.91035 0.87720 0.91636 0.81837 0.87894 0.91380 0.91559 0.75189 0.91213 0.92354 0.92225 0.91237 0.89962 0.91878 0.92015 0.96571 0.96487 0.78346 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.41 101.05 1.05 1.31 16 2 O -0.29 -2.93 10.49 -18.34 -0.19 -3.12 16 3 C 0.39 4.37 7.52 -16.81 -0.13 4.25 16 4 C -0.25 -2.62 10.09 -38.87 -0.39 -3.01 16 5 C 0.39 4.50 7.52 -16.80 -0.13 4.38 16 6 O -0.29 -2.98 10.49 -18.33 -0.19 -3.18 16 7 C 0.04 0.28 10.41 101.05 1.05 1.33 16 8 N -0.54 -7.34 9.06 -11.24 -0.10 -7.44 16 9 C 0.37 4.95 7.60 -157.13 -1.19 3.76 16 10 C 0.59 8.23 7.82 -12.00 -0.09 8.13 16 11 O -0.50 -8.37 16.52 5.39 0.09 -8.28 16 12 N -0.69 -8.16 4.52 -54.52 -0.25 -8.41 16 13 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 15 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 16 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 17 C -0.13 -1.99 5.22 -26.72 -0.14 -2.13 16 18 C 0.15 3.05 6.26 -4.04 -0.03 3.02 16 19 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 20 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 N -0.57 -6.82 8.51 -11.24 -0.10 -6.91 16 29 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.41 4.36 7.90 -40.82 -0.32 4.04 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -34.39 403.26 -6.80 -41.19 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.31 Total: 7.61 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.19 Total: 12.23 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -0.05 Total: -70.07 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.30 Total: -14.59 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.39 -6.80 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485728455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.698 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds