Wall clock time and date at job start Tue Mar 31 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35549 * 116.99697 * 2 1 4 4 C 1.39188 * 120.44328 * 179.97438 * 3 2 1 5 5 C 1.39193 * 118.41453 * 179.97438 * 4 3 2 6 6 O 1.35544 * 120.44364 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99949 * 179.97438 * 6 5 4 8 8 N 1.32742 * 119.10672 * 359.97438 * 5 4 3 9 9 C 1.32425 * 120.81985 * 0.02562 * 8 5 4 10 10 C 1.48551 * 119.13386 * 179.97438 * 9 8 5 11 11 O 1.21468 * 119.99863 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99866 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99771 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47391 * 34.99730 * 13 12 10 15 15 C 1.53002 * 109.46799 * 274.99826 * 13 12 10 16 16 C 1.53000 * 109.46840 * 155.00060 * 13 12 10 17 17 C 1.53005 * 109.46867 * 294.99527 * 16 13 12 18 18 C 1.53008 * 109.46774 * 180.02562 * 17 16 13 19 19 N 1.46497 * 109.46734 * 179.97438 * 18 17 16 20 20 C 1.36943 * 119.99762 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99644 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99581 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00547 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99493 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46932 * 60.00623 * 24 22 20 26 26 H 1.48503 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47549 * 300.00356 * 24 22 20 28 28 N 1.32423 * 121.73032 * 0.25141 * 9 8 5 29 29 H 1.08997 * 109.47403 * 60.00512 * 1 2 3 30 30 H 1.09004 * 109.46663 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47425 * 300.00232 * 1 2 3 32 32 H 1.08000 * 120.79066 * 359.95537 * 4 3 2 33 33 H 1.09001 * 109.47536 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.47334 * 299.99997 * 7 6 5 35 35 H 1.09001 * 109.47080 * 59.99671 * 7 6 5 36 36 H 0.96998 * 119.99599 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.46986 * 180.02562 * 15 13 12 38 38 H 1.09002 * 109.47075 * 299.99543 * 15 13 12 39 39 H 1.08996 * 109.47407 * 60.00500 * 15 13 12 40 40 H 1.08990 * 109.47170 * 54.99738 * 16 13 12 41 41 H 1.09001 * 109.46952 * 174.99815 * 16 13 12 42 42 H 1.09000 * 109.47443 * 300.00098 * 17 16 13 43 43 H 1.09001 * 109.47099 * 60.00379 * 17 16 13 44 44 H 1.09000 * 109.47044 * 300.00132 * 18 17 16 45 45 H 1.09001 * 109.47171 * 60.00211 * 18 17 16 46 46 H 0.97003 * 120.00464 * 0.02562 * 19 18 17 47 47 H 0.96996 * 120.00496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 6 3.4337 1.2915 0.0005 5 6 4.0213 2.5533 0.0000 6 8 5.3705 2.6826 -0.0001 7 6 5.8948 4.0120 -0.0012 8 7 3.2424 3.6282 -0.0016 9 6 1.9234 3.5104 -0.0021 10 6 1.0876 4.7385 -0.0032 11 8 1.6156 5.8324 -0.0033 12 7 -0.2565 4.6388 -0.0032 13 6 -1.0807 5.8499 -0.0049 14 1 -0.5892 6.6232 -0.5953 15 6 -1.2639 6.3441 1.4314 16 6 -2.4484 5.5351 -0.6143 17 6 -2.2762 5.1606 -2.0877 18 6 -3.6440 4.8464 -2.6972 19 7 -3.4792 4.4884 -4.1082 20 6 -4.5738 4.1647 -4.8648 21 1 -5.5584 4.1737 -4.4214 22 6 -4.4175 3.8250 -6.2016 23 7 -3.2174 3.8136 -6.7419 24 14 -5.9107 3.3842 -7.2339 25 1 -6.8492 4.5348 -7.2634 26 1 -5.4784 3.0631 -8.6178 27 1 -6.5916 2.2051 -6.6413 28 7 1.3300 2.3266 0.0039 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0413 0.3986 0.0017 33 1 6.9841 3.9730 -0.0007 34 1 5.5502 4.5377 -0.8918 35 1 5.5500 4.5393 0.8882 36 1 -0.6780 3.7652 -0.0028 37 1 -1.8775 7.2450 1.4302 38 1 -1.7555 5.5709 2.0218 39 1 -0.2896 6.5684 1.8655 40 1 -2.9018 4.7015 -0.0781 41 1 -3.0919 6.4113 -0.5349 42 1 -1.8227 5.9942 -2.6240 43 1 -1.6327 4.2844 -2.1671 44 1 -4.0979 4.0129 -2.1611 45 1 -4.2872 5.7228 -2.6179 46 1 -2.5947 4.4800 -4.5064 47 1 -3.1082 3.5758 -7.6759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485728455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:00 Heat of formation + Delta-G solvation = -78.347247 kcal Electronic energy + Delta-G solvation = -29161.513938 eV Core-core repulsion = 24958.925423 eV Total energy + Delta-G solvation = -4202.588515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.75844 -40.89707 -40.31957 -38.90599 -37.95468 -36.54908 -34.44248 -33.88240 -33.33171 -32.31214 -30.82396 -29.02064 -28.03959 -27.24645 -26.72275 -24.81082 -24.35040 -22.96984 -22.27370 -21.66412 -20.37778 -19.75964 -19.11663 -18.30749 -17.79996 -17.67613 -17.34342 -16.84280 -16.74316 -16.65960 -16.29573 -15.99676 -15.77655 -15.39889 -15.34505 -15.18743 -15.03588 -14.75708 -14.40499 -13.84249 -13.43584 -13.18671 -13.13536 -13.01389 -12.92367 -12.87401 -12.73276 -12.48832 -12.40809 -12.35902 -12.27395 -12.08251 -11.85446 -11.71200 -11.50239 -11.25620 -10.98862 -10.92245 -10.91479 -10.29772 -10.12826 -9.00002 -7.95115 -5.24525 -0.79388 -0.09936 1.26170 1.42381 1.46875 1.50497 1.56675 1.62417 2.07232 2.55362 2.56256 2.71951 3.02843 3.38502 3.58073 3.65530 3.84001 3.97275 4.11535 4.12311 4.28761 4.34407 4.34935 4.40289 4.41165 4.42738 4.43981 4.59826 4.67982 4.73565 4.82254 4.85231 4.88021 4.91623 5.00177 5.12622 5.32770 5.33748 5.43731 5.44319 5.50311 5.51460 5.73253 5.93418 6.22014 6.27087 6.63300 6.96529 7.32496 8.10366 8.31941 9.28560 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010216 B = 0.002611 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.128380 B =10722.388017 C =11769.722681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.294 6.294 3 C 0.380 3.620 4 C -0.241 4.241 5 C 0.375 3.625 6 O -0.294 6.294 7 C 0.032 3.968 8 N -0.562 5.562 9 C 0.351 3.649 10 C 0.584 3.416 11 O -0.538 6.538 12 N -0.684 5.684 13 C 0.141 3.859 14 H 0.073 0.927 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.115 4.115 18 C 0.151 3.849 19 N -0.751 5.751 20 C -0.246 4.246 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.973 5.973 24 Si 0.976 3.024 25 H -0.277 1.277 26 H -0.297 1.297 27 H -0.275 1.275 28 N -0.564 5.564 29 H 0.058 0.942 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.189 0.811 33 H 0.137 0.863 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.027 0.973 45 H 0.022 0.978 46 H 0.371 0.629 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.937 -4.498 22.123 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.197 6.197 3 C 0.196 3.804 4 C -0.264 4.264 5 C 0.191 3.809 6 O -0.198 6.198 7 C -0.062 4.062 8 N -0.298 5.298 9 C 0.079 3.921 10 C 0.365 3.635 11 O -0.412 6.412 12 N -0.337 5.337 13 C 0.038 3.962 14 H 0.092 0.908 15 C -0.213 4.213 16 C -0.146 4.146 17 C -0.153 4.153 18 C 0.025 3.975 19 N -0.394 5.394 20 C -0.378 4.378 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.624 5.624 24 Si 0.804 3.196 25 H -0.203 1.203 26 H -0.223 1.223 27 H -0.201 1.201 28 N -0.302 5.302 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.206 0.794 33 H 0.155 0.845 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.256 0.744 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.925 -3.448 22.118 25.848 hybrid contribution -0.048 -0.974 -1.231 1.571 sum 12.877 -4.422 20.886 24.932 Atomic orbital electron populations 1.23325 0.74401 1.05755 1.03185 1.86271 1.25276 1.22040 1.86144 1.19758 0.89005 0.84936 0.86688 1.21072 0.92825 0.98824 1.13718 1.19811 0.85465 0.88470 0.87159 1.86251 1.13781 1.33441 1.86320 1.23253 1.00751 0.79485 1.02682 1.67834 1.06380 1.33767 1.21817 1.22116 0.87093 0.90964 0.91917 1.17317 0.82787 0.85737 0.77609 1.90779 1.73335 1.27254 1.49868 1.45896 1.04107 1.11831 1.71824 1.21201 0.90811 0.86029 0.98160 0.90847 1.22110 1.02033 1.02694 0.94436 1.21766 0.95249 1.04205 0.93411 1.21617 0.96500 1.00731 0.96469 1.20858 0.96035 0.96864 0.83784 1.42669 1.06396 1.82701 1.07614 1.19649 0.88914 1.36842 0.92386 0.90387 1.25630 0.99427 1.03572 0.98510 1.69823 1.22647 1.56943 1.12951 0.85178 0.78672 0.78370 0.77351 1.20306 1.22285 1.20061 1.67949 1.41291 0.98218 1.22717 0.92324 0.85181 0.90839 0.79405 0.84458 0.92609 0.92076 0.74406 0.89561 0.90766 0.93638 0.89156 0.88306 0.93423 0.92840 0.95522 0.96005 0.79831 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.41 113.37 1.18 1.57 16 2 O -0.29 -5.48 10.49 -88.54 -0.93 -6.41 16 3 C 0.38 8.24 7.52 84.78 0.64 8.88 16 4 C -0.24 -4.79 10.09 22.73 0.23 -4.57 16 5 C 0.37 8.68 7.52 84.79 0.64 9.31 16 6 O -0.29 -5.79 10.49 -88.49 -0.93 -6.71 16 7 C 0.03 0.50 10.41 113.37 1.18 1.68 16 8 N -0.56 -15.54 9.06 -302.17 -2.74 -18.28 16 9 C 0.35 9.64 7.60 137.71 1.05 10.69 16 10 C 0.58 16.78 7.82 87.00 0.68 17.46 16 11 O -0.54 -18.62 16.52 -3.61 -0.06 -18.68 16 12 N -0.68 -15.81 4.52 -444.73 -2.01 -17.82 16 13 C 0.14 3.03 2.57 44.99 0.12 3.14 16 14 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 15 C -0.15 -2.64 9.48 71.98 0.68 -1.95 16 16 C -0.11 -2.23 4.75 30.60 0.15 -2.09 16 17 C -0.12 -3.53 5.22 30.60 0.16 -3.37 16 18 C 0.15 5.82 6.26 86.38 0.54 6.36 16 19 N -0.75 -38.92 5.60 -343.44 -1.92 -40.84 16 20 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 24 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 28 N -0.56 -13.44 8.51 -302.17 -2.57 -16.01 16 29 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 0.92 8.12 -2.39 -0.02 0.91 16 32 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.00 8.12 -2.38 -0.02 0.98 16 35 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 36 H 0.42 8.49 7.90 -92.71 -0.73 7.76 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.72 7.75 -2.39 -0.02 1.70 16 44 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.94 403.26 -0.76 -75.69 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.45 Total: 31.31 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 8.54 Total: 29.89 kcal Atomic # 7 Polarization: -144.46 SS G_CDS: -8.96 Total: -153.42 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.92 Total: -31.80 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.94 -0.76 -75.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485728455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.655 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds