Wall clock time and date at job start Tue Mar 31 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46712 * 2 1 4 4 N 1.46490 * 109.47365 * 239.99831 * 2 1 3 5 5 C 1.34782 * 120.00250 * 84.99597 * 4 2 1 6 6 O 1.21279 * 119.99907 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00142 * 179.97438 * 5 4 2 8 8 H 1.08997 * 115.54883 * 46.37822 * 7 5 4 9 9 C 1.52992 * 117.49994 * 192.04821 * 7 5 4 10 10 C 1.53000 * 60.00309 * 107.49082 * 9 7 5 11 11 H 1.08999 * 117.49987 * 107.48675 * 10 9 7 12 12 C 1.50701 * 117.50169 * 252.51423 * 10 9 7 13 13 N 1.34777 * 119.99702 * 237.60481 * 12 10 9 14 14 O 1.21283 * 119.99902 * 57.60231 * 12 10 9 15 15 C 1.52997 * 109.47109 * 119.99193 * 2 1 3 16 16 C 1.53508 * 114.17039 * 185.79793 * 15 2 1 17 17 N 1.47482 * 87.93404 * 139.86543 * 16 15 2 18 18 C 1.46900 * 110.99876 * 221.29903 * 17 16 15 19 19 C 1.50708 * 109.46662 * 169.99939 * 18 17 16 20 20 O 1.21288 * 120.00015 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99621 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00110 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99861 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00372 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00011 * 359.72027 * 24 22 21 26 26 Si 1.86801 * 120.00052 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47003 * 179.72059 * 26 24 22 28 28 H 1.48498 * 109.47041 * 299.72059 * 26 24 22 29 29 H 1.48503 * 109.47182 * 59.72187 * 26 24 22 30 30 C 1.47480 * 87.83447 * 332.99194 * 17 16 15 31 31 H 1.09006 * 109.46844 * 184.49053 * 1 2 3 32 32 H 1.08998 * 109.47305 * 304.49128 * 1 2 3 33 33 H 1.09000 * 109.47140 * 64.49869 * 1 2 3 34 34 H 0.97002 * 119.99880 * 264.99231 * 4 2 1 35 35 H 1.08998 * 117.50191 * 214.98126 * 9 7 5 36 36 H 1.09006 * 117.50273 * 359.97438 * 9 7 5 37 37 H 0.97005 * 120.00252 * 0.02562 * 13 12 10 38 38 H 0.97001 * 119.99570 * 179.97438 * 13 12 10 39 39 H 1.09001 * 113.25368 * 52.85248 * 15 2 1 40 40 H 1.08997 * 113.47898 * 25.09892 * 16 15 2 41 41 H 1.09004 * 113.53615 * 254.63890 * 16 15 2 42 42 H 1.08997 * 109.47515 * 49.99841 * 18 17 16 43 43 H 1.08995 * 109.47042 * 289.99086 * 18 17 16 44 44 H 0.97008 * 120.00304 * 0.02562 * 21 19 18 45 45 H 0.96999 * 120.00052 * 0.27175 * 25 24 22 46 46 H 1.08999 * 113.48084 * 141.78010 * 30 17 16 47 47 H 1.09002 * 113.47115 * 272.24259 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1585 -2.4116 7 6 2.6500 -0.7286 -3.5874 8 1 2.1943 -1.6978 -3.7899 9 6 3.0424 0.1325 -4.7895 10 6 4.1253 -0.5510 -3.9523 11 1 4.6404 -1.4036 -4.3948 12 6 4.9641 0.3208 -3.0538 13 7 6.3047 0.3377 -3.1917 14 8 4.4329 1.0073 -2.2068 15 6 2.0400 -0.7211 1.2493 16 6 3.5632 -0.6626 1.4310 17 7 3.3298 -0.4633 2.8736 18 6 4.2444 0.5481 3.4200 19 6 3.8208 0.9030 4.8221 20 8 2.8522 0.3666 5.3171 21 7 4.5185 1.8165 5.5258 22 6 4.1329 2.1399 6.8011 23 1 3.2699 1.6629 7.2417 24 6 4.8518 3.0821 7.5265 25 7 5.9046 3.6592 6.9921 26 14 4.3260 3.5232 9.2638 27 1 5.2546 4.5405 9.8188 28 1 2.9468 4.0731 9.2390 29 1 4.3586 2.3066 10.1148 30 6 2.0282 0.1352 2.5234 31 1 -0.3633 -1.0246 0.0805 32 1 -0.3634 0.5819 0.8470 33 1 -0.3633 0.4424 -0.9275 34 1 2.2492 -1.6317 -1.1524 35 1 2.8452 -0.2703 -5.7830 36 1 2.9364 1.2129 -4.6908 37 1 6.7296 -0.2110 -3.8694 38 1 6.8447 0.8992 -2.6136 39 1 1.6133 -1.7160 1.3763 40 1 4.0260 0.1954 0.9435 41 1 4.0657 -1.6014 1.1981 42 1 4.2150 1.4403 2.7947 43 1 5.2587 0.1494 3.4369 44 1 5.2930 2.2458 5.1297 45 1 6.1775 3.4304 6.0899 46 1 1.2288 -0.1279 3.2161 47 1 2.0815 1.2061 2.3274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506655980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:35 Heat of formation + Delta-G solvation = -80.460425 kcal Electronic energy + Delta-G solvation = -29622.440521 eV Core-core repulsion = 25419.760372 eV Total energy + Delta-G solvation = -4202.680149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87969 -41.32337 -40.05941 -39.56392 -37.04541 -36.43477 -36.05123 -34.58027 -33.29103 -32.50043 -30.75001 -27.36118 -27.04993 -26.25451 -25.66100 -24.88842 -22.69788 -21.54785 -21.36240 -21.21743 -20.45198 -20.01176 -18.94893 -18.27639 -18.01842 -17.35942 -17.20569 -16.93744 -16.67117 -16.16243 -15.96989 -15.76015 -15.72223 -15.48735 -15.29121 -15.09986 -14.76959 -14.28219 -14.12994 -14.03881 -13.73356 -13.48403 -13.38182 -13.16380 -12.97238 -12.85413 -12.63319 -12.05839 -11.94724 -11.93911 -11.92984 -11.60148 -11.59680 -11.57074 -11.49511 -11.03489 -10.70865 -10.62151 -10.47517 -10.16793 -10.09020 -9.83756 -8.97765 -6.11617 1.31992 1.48843 1.51386 1.80378 1.89611 1.93872 2.12187 2.36143 2.60158 2.69433 2.93763 3.09571 3.14601 3.32222 3.60046 3.72417 3.75795 3.88428 3.94541 4.05454 4.09166 4.12859 4.22576 4.25662 4.34554 4.36328 4.38238 4.45376 4.65391 4.73489 4.75197 4.78540 4.85227 4.96800 5.09876 5.13328 5.19523 5.30181 5.54443 5.62338 5.84848 5.88195 5.91657 6.49800 6.51473 6.68632 6.72216 7.37524 7.37770 7.50900 7.85293 8.49651 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.002332 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.033430 B =12003.551542 C =12942.487664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.047 0.953 4 N -0.707 5.707 5 C 0.546 3.454 6 O -0.580 6.580 7 C -0.166 4.166 8 H 0.176 0.824 9 C -0.117 4.117 10 C -0.157 4.157 11 H 0.181 0.819 12 C 0.519 3.481 13 N -0.834 5.834 14 O -0.576 6.576 15 C -0.097 4.097 16 C 0.015 3.985 17 N -0.464 5.464 18 C 0.022 3.978 19 C 0.446 3.554 20 O -0.609 6.609 21 N -0.588 5.588 22 C -0.410 4.410 23 H 0.074 0.926 24 C -0.043 4.043 25 N -0.916 5.916 26 Si 1.135 2.865 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.271 1.271 30 C 0.017 3.983 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.413 0.587 35 H 0.154 0.846 36 H 0.074 0.926 37 H 0.420 0.580 38 H 0.403 0.597 39 H 0.130 0.870 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.383 0.617 45 H 0.258 0.742 46 H 0.074 0.926 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -14.636 -30.075 33.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.060 3.940 3 H 0.066 0.934 4 N -0.359 5.359 5 C 0.334 3.666 6 O -0.459 6.459 7 C -0.187 4.187 8 H 0.194 0.806 9 C -0.155 4.155 10 C -0.178 4.178 11 H 0.198 0.802 12 C 0.304 3.696 13 N -0.398 5.398 14 O -0.455 6.455 15 C -0.116 4.116 16 C -0.113 4.113 17 N -0.186 5.186 18 C -0.110 4.110 19 C 0.234 3.766 20 O -0.494 6.494 21 N -0.227 5.227 22 C -0.539 4.539 23 H 0.092 0.908 24 C -0.241 4.241 25 N -0.555 5.555 26 Si 0.954 3.046 27 H -0.196 1.196 28 H -0.198 1.198 29 H -0.196 1.196 30 C -0.113 4.113 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.249 0.751 35 H 0.172 0.828 36 H 0.093 0.907 37 H 0.251 0.749 38 H 0.234 0.766 39 H 0.148 0.852 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.217 0.783 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.552 -13.386 -27.485 30.611 hybrid contribution 0.807 0.189 -1.659 1.854 sum -0.745 -13.198 -29.144 32.002 Atomic orbital electron populations 1.22078 0.94217 1.03319 1.01628 1.20584 0.94488 0.95372 0.83513 0.93443 1.45624 1.67523 1.14339 1.08393 1.19949 0.75901 0.86099 0.84632 1.90657 1.51731 1.18055 1.85490 1.22420 0.97300 1.04031 0.94931 0.80636 1.23090 0.97170 0.98978 0.96250 1.22494 0.89469 1.03417 1.02469 0.80183 1.20370 0.83860 0.81788 0.83535 1.43650 1.06383 1.49109 1.40669 1.90893 1.72807 1.44385 1.37437 1.22945 0.95708 1.00818 0.92132 1.23806 0.96982 1.02825 0.87720 1.68829 1.02666 1.32604 1.14508 1.22365 0.99728 0.96207 0.92701 1.20596 0.85181 0.82031 0.88837 1.90484 1.30403 1.55941 1.72615 1.42018 1.28306 1.37833 1.14532 1.20535 1.15637 1.25751 0.91991 0.90776 1.27924 0.93672 0.92892 1.09643 1.70969 1.25040 1.42904 1.16625 0.82629 0.76112 0.77106 0.68732 1.19559 1.19789 1.19587 1.23617 0.94258 0.97079 0.96338 0.90009 0.92112 0.93395 0.75087 0.82802 0.90696 0.74862 0.76594 0.85164 0.92309 0.87538 0.91688 0.87191 0.78303 0.93132 0.90787 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.47 71.98 0.68 -2.70 16 2 C 0.17 4.03 2.34 44.99 0.11 4.14 16 3 H 0.05 1.57 7.46 -2.38 -0.02 1.56 16 4 N -0.71 -13.56 4.97 -442.54 -2.20 -15.76 16 5 C 0.55 12.60 5.27 87.66 0.46 13.06 16 6 O -0.58 -20.01 15.02 16.45 0.25 -19.77 16 7 C -0.17 -1.92 6.19 -11.54 -0.07 -2.00 16 8 H 0.18 0.51 8.14 -2.39 -0.02 0.49 16 9 C -0.12 -1.23 9.74 30.59 0.30 -0.93 16 10 C -0.16 -1.33 6.19 -11.54 -0.07 -1.40 16 11 H 0.18 -0.27 8.14 -2.39 -0.02 -0.29 16 12 C 0.52 8.86 7.81 87.66 0.68 9.55 16 13 N -0.83 -7.52 8.87 -173.53 -1.54 -9.06 16 14 O -0.58 -17.18 14.40 16.44 0.24 -16.95 16 15 C -0.10 -2.31 3.48 -10.45 -0.04 -2.35 16 16 C 0.02 0.40 7.18 83.57 0.60 1.00 16 17 N -0.46 -16.35 6.06 -932.48 -5.65 -22.00 16 18 C 0.02 0.85 5.31 85.56 0.45 1.30 16 19 C 0.45 22.89 7.62 87.66 0.67 23.56 16 20 O -0.61 -35.79 15.34 -3.06 -0.05 -35.84 16 21 N -0.59 -31.90 5.28 -306.98 -1.62 -33.53 16 22 C -0.41 -24.51 9.68 84.04 0.81 -23.70 16 23 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.04 -2.45 5.50 84.93 0.47 -1.98 16 25 N -0.92 -53.19 13.68 21.66 0.30 -52.89 16 26 Si 1.14 50.20 29.92 68.60 2.05 52.25 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 C 0.02 0.57 6.27 83.57 0.52 1.09 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 4.94 8.60 -92.71 -0.80 4.14 16 35 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.07 1.44 7.72 -2.38 -0.02 1.42 16 37 H 0.42 0.29 8.83 -92.70 -0.82 -0.52 16 38 H 0.40 4.11 8.93 -92.71 -0.83 3.29 16 39 H 0.13 2.53 8.14 -2.39 -0.02 2.52 16 40 H 0.06 1.72 7.73 -2.39 -0.02 1.70 16 41 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.07 2.40 7.56 -2.39 -0.02 2.38 16 43 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 44 H 0.38 19.27 6.73 -92.70 -0.62 18.65 16 45 H 0.26 14.58 6.78 -92.71 -0.63 13.96 16 46 H 0.07 2.75 8.13 -2.39 -0.02 2.73 16 47 H 0.05 1.86 7.59 -2.39 -0.02 1.84 16 Total: -1.00 -93.81 393.43 -4.53 -98.34 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -1.88 Total: 36.54 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 5.58 Total: 18.64 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -10.72 Total: -133.23 kcal Atomic # 8 Polarization: -72.98 SS G_CDS: 0.44 Total: -72.55 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -93.81 -4.53 -98.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506655980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.884 kcal (2) G-P(sol) polarization free energy of solvation -93.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds