Wall clock time and date at job start Tue Mar 31 2020 22:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46845 * 2 1 4 4 N 1.46491 * 109.47093 * 120.00263 * 2 1 3 5 5 C 1.36939 * 120.00107 * 274.99938 * 4 2 1 6 6 H 1.07999 * 119.99673 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00016 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00084 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00449 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47274 * 89.99397 * 9 7 5 11 11 H 1.48493 * 109.47619 * 210.00009 * 9 7 5 12 12 H 1.48505 * 109.46788 * 329.99705 * 9 7 5 13 13 C 1.53000 * 109.46889 * 240.00172 * 2 1 3 14 14 H 1.08998 * 109.50858 * 185.10012 * 13 2 1 15 15 C 1.53294 * 109.51376 * 65.00363 * 13 2 1 16 16 N 1.47152 * 108.38555 * 187.77425 * 15 13 2 17 17 C 1.34783 * 120.98017 * 230.51217 * 16 15 13 18 18 O 1.21703 * 119.99899 * 4.90795 * 17 16 15 19 19 C 1.46658 * 119.99919 * 184.91664 * 17 16 15 20 20 C 1.35143 * 126.37691 * 45.51413 * 19 17 16 21 21 N 1.37022 * 107.87387 * 179.72762 * 20 19 17 22 22 C 1.46497 * 125.65114 * 180.27438 * 21 20 19 23 23 C 1.34621 * 108.69530 * 0.39403 * 21 20 19 24 24 O 1.21730 * 125.72375 * 179.86628 * 23 21 20 25 25 N 1.34759 * 108.54608 * 359.60687 * 23 21 20 26 26 C 1.46500 * 126.18109 * 180.24271 * 25 23 21 27 27 C 1.47150 * 118.03805 * 50.77846 * 16 15 13 28 28 C 1.53708 * 108.16392 * 309.16473 * 27 16 15 29 29 O 1.42962 * 109.14902 * 52.53444 * 28 27 16 30 30 H 1.09000 * 109.46657 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47259 * 299.99746 * 1 2 3 32 32 H 1.08997 * 109.47079 * 60.00022 * 1 2 3 33 33 H 0.97005 * 120.00309 * 95.00324 * 4 2 1 34 34 H 0.96994 * 120.00198 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.68540 * 68.04311 * 15 13 2 36 36 H 1.09001 * 109.71057 * 307.50849 * 15 13 2 37 37 H 1.07999 * 126.06594 * 0.02562 * 20 19 17 38 38 H 1.08997 * 109.47357 * 180.16348 * 22 21 20 39 39 H 1.09003 * 109.47613 * 300.16419 * 22 21 20 40 40 H 1.08997 * 109.47292 * 60.16567 * 22 21 20 41 41 H 1.09000 * 109.46984 * 359.97438 * 26 25 23 42 42 H 1.08999 * 109.46810 * 119.97381 * 26 25 23 43 43 H 1.09000 * 109.47091 * 239.97525 * 26 25 23 44 44 H 1.09007 * 109.67613 * 68.94175 * 27 16 15 45 45 H 1.08999 * 109.68492 * 189.49399 * 27 16 15 46 46 H 1.09000 * 109.65572 * 292.57129 * 28 27 16 47 47 H 1.09003 * 109.44706 * 172.37105 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8919 1.0402 2.4243 7 6 2.6113 -0.6621 3.5092 8 7 2.7376 -0.0055 4.6429 9 14 3.0556 -2.4745 3.4253 10 1 4.4884 -2.6167 3.0620 11 1 2.8155 -3.1049 4.7482 12 1 2.2160 -3.1430 2.3989 13 6 2.0400 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2054 15 6 1.6350 0.0698 -2.4984 16 7 1.9698 -0.7333 -3.6851 17 6 2.6765 -0.2047 -4.7038 18 8 3.1241 0.9234 -4.6129 19 6 2.9058 -0.9888 -5.9218 20 6 1.9842 -1.7136 -6.5938 21 7 2.6044 -2.2849 -7.6739 22 6 1.9629 -3.1471 -8.6694 23 6 3.9015 -1.9247 -7.6670 24 8 4.7369 -2.2609 -8.4861 25 7 4.1187 -1.1250 -6.6043 26 6 5.3948 -0.5094 -6.2315 27 6 1.5051 -2.1288 -3.7295 28 6 1.9210 -2.8143 -2.4181 29 8 1.4659 -2.0289 -1.3136 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.0609 -0.4627 5.4348 35 1 2.1797 1.0134 -2.5280 36 1 0.5629 0.2654 -2.4781 37 1 0.9424 -1.8195 -6.3296 38 1 2.6996 -3.4568 -9.4106 39 1 1.5513 -4.0278 -8.1763 40 1 1.1604 -2.5983 -9.1622 41 1 6.1609 -0.7970 -6.9516 42 1 5.2877 0.5753 -6.2285 43 1 5.6851 -0.8487 -5.2372 44 1 0.4199 -2.1513 -3.8306 45 1 1.9638 -2.6419 -4.5747 46 1 3.0067 -2.9028 -2.3789 47 1 1.4721 -3.8063 -2.3688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506858475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:11 Heat of formation + Delta-G solvation = -49.545795 kcal Electronic energy + Delta-G solvation = -30510.067682 eV Core-core repulsion = 26308.728091 eV Total energy + Delta-G solvation = -4201.339590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.61669 -41.36325 -39.62423 -38.05401 -37.25461 -36.48057 -35.80369 -34.35286 -32.49127 -31.60036 -30.19850 -29.59660 -28.13834 -27.08303 -26.30027 -24.73763 -24.59027 -23.00764 -21.90598 -21.33395 -20.59162 -19.75881 -18.76933 -18.18858 -17.79902 -17.60647 -17.15017 -16.69711 -16.54737 -16.35060 -16.22804 -16.04057 -15.66021 -15.43867 -15.08068 -15.03718 -14.77677 -14.49456 -14.26419 -14.24825 -14.05911 -13.81463 -13.44273 -13.36387 -13.26888 -13.16788 -12.91570 -12.50781 -12.43935 -12.32641 -12.07718 -11.88426 -11.80907 -11.72006 -11.57950 -11.25980 -11.05185 -10.96744 -10.95849 -9.67102 -9.29721 -8.91863 -7.99929 -5.32323 0.37322 0.98547 1.39378 1.41323 1.49690 1.51228 1.62486 1.86160 2.39635 2.50622 2.76752 3.31765 3.33034 3.45046 3.76631 3.88742 3.92163 3.95302 4.02509 4.10497 4.16327 4.28453 4.30742 4.31726 4.36675 4.49582 4.56175 4.59806 4.63840 4.67585 4.80296 4.82881 4.84782 4.87708 4.98586 5.10637 5.17126 5.24512 5.29517 5.57495 5.65352 5.79966 6.06557 6.17360 6.20815 6.27063 6.87000 7.03789 7.10906 7.87661 8.06938 9.21606 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.002651 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.024657 B =10561.493267 C =10577.038505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.179 3.821 3 H 0.060 0.940 4 N -0.748 5.748 5 C -0.224 4.224 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.985 5.985 9 Si 0.952 3.048 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.251 1.251 13 C 0.087 3.913 14 H 0.045 0.955 15 C 0.095 3.905 16 N -0.596 5.596 17 C 0.596 3.404 18 O -0.568 6.568 19 C -0.064 4.064 20 C 0.090 3.910 21 N -0.516 5.516 22 C 0.084 3.916 23 C 0.633 3.367 24 O -0.609 6.609 25 N -0.519 5.519 26 C 0.098 3.902 27 C 0.068 3.932 28 C 0.036 3.964 29 O -0.380 6.380 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.241 0.759 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.042 0.958 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 -9.469 -29.577 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.392 5.392 5 C -0.355 4.355 6 H 0.078 0.922 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.779 3.221 10 H -0.209 1.209 11 H -0.224 1.224 12 H -0.176 1.176 13 C 0.027 3.973 14 H 0.063 0.937 15 C -0.028 4.028 16 N -0.329 5.329 17 C 0.384 3.616 18 O -0.447 6.447 19 C -0.172 4.172 20 C -0.040 4.040 21 N -0.232 5.232 22 C -0.055 4.055 23 C 0.336 3.664 24 O -0.490 6.490 25 N -0.239 5.239 26 C -0.043 4.043 27 C -0.053 4.053 28 C -0.041 4.041 29 O -0.299 6.299 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.200 0.800 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.257 0.743 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.060 0.940 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.329 -9.025 -29.893 31.860 hybrid contribution 1.074 -0.470 0.646 1.339 sum -5.254 -9.495 -29.247 31.195 Atomic orbital electron populations 1.22207 0.96233 1.01763 1.00754 1.20415 0.94247 0.94618 0.83649 0.92241 1.42721 1.79968 1.09639 1.06852 1.19049 1.34680 0.94443 0.87349 0.92213 1.25452 1.02623 1.02357 0.95246 1.69878 1.54921 1.37628 1.01158 0.85446 0.78388 0.81259 0.76965 1.20893 1.22383 1.17569 1.22581 0.96355 0.84003 0.94344 0.93656 1.22318 1.03111 0.94902 0.82456 1.47982 1.53778 1.14049 1.17087 1.16962 0.77789 0.84985 0.81815 1.90852 1.51615 1.20669 1.81583 1.19532 0.87356 1.10147 1.00165 1.22721 1.00171 0.94019 0.87076 1.45173 1.08152 1.44317 1.25515 1.22257 0.98674 0.94266 0.90353 1.16358 0.84020 0.82867 0.83169 1.91001 1.49039 1.65027 1.43960 1.45310 1.09883 1.44417 1.24320 1.21823 0.81786 0.98665 1.02028 1.23041 1.02914 0.79538 0.99790 1.23315 0.99316 0.96109 0.85328 1.88044 1.67719 1.25564 1.48558 0.92554 0.95010 0.90431 0.79998 0.93473 0.89156 0.87566 0.74309 0.90256 0.87067 0.87760 0.88778 0.90424 0.90443 0.86543 0.86525 0.93951 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.06 71.98 0.65 -4.07 16 2 C 0.18 6.39 2.77 45.00 0.12 6.51 16 3 H 0.06 2.22 8.08 -2.39 -0.02 2.21 16 4 N -0.75 -34.51 4.91 -322.95 -1.59 -36.09 16 5 C -0.22 -12.68 10.41 84.03 0.87 -11.81 16 6 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 8 N -0.98 -63.47 13.97 21.65 0.30 -63.17 16 9 Si 0.95 46.00 27.74 68.60 1.90 47.90 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 13 C 0.09 2.44 2.61 30.69 0.08 2.52 16 14 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 15 C 0.09 2.09 5.84 86.35 0.50 2.60 16 16 N -0.60 -10.62 3.01 -821.26 -2.48 -13.09 16 17 C 0.60 12.84 7.34 86.44 0.63 13.48 16 18 O -0.57 -17.03 16.31 -4.36 -0.07 -17.10 16 19 C -0.06 -1.12 5.83 39.35 0.23 -0.89 16 20 C 0.09 0.80 9.15 83.17 0.76 1.57 16 21 N -0.52 -6.50 3.12 -679.65 -2.12 -8.62 16 22 C 0.08 0.37 11.16 127.77 1.43 1.80 16 23 C 0.63 14.21 8.49 179.11 1.52 15.74 16 24 O -0.61 -18.24 17.11 -4.44 -0.08 -18.32 16 25 N -0.52 -11.16 3.21 -667.05 -2.14 -13.30 16 26 C 0.10 1.99 10.75 127.77 1.37 3.36 16 27 C 0.07 0.69 5.79 86.49 0.50 1.20 16 28 C 0.04 0.58 7.00 72.22 0.51 1.09 16 29 O -0.38 -9.72 9.24 -148.98 -1.38 -11.09 16 30 H 0.06 1.78 7.55 -2.39 -0.02 1.76 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.82 6.42 -2.39 -0.02 1.80 16 33 H 0.37 16.67 5.45 -92.70 -0.51 16.17 16 34 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.09 2.31 7.06 -2.39 -0.02 2.29 16 36 H 0.11 1.95 6.28 -2.39 -0.01 1.94 16 37 H 0.24 -0.29 7.64 -2.91 -0.02 -0.31 16 38 H 0.08 0.67 7.68 -2.39 -0.02 0.65 16 39 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.09 1.83 7.73 -2.39 -0.02 1.81 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.12 0.71 5.25 -2.39 -0.01 0.70 16 46 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.13 1.39 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -86.82 379.85 2.44 -84.37 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.43 Total: 18.84 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 9.65 Total: 29.67 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -8.02 Total: -134.27 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -1.52 Total: -46.51 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal Total: -86.82 2.44 -84.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506858475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.828 kcal (2) G-P(sol) polarization free energy of solvation -86.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds