Wall clock time and date at job start Tue Mar 31 2020 22:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47637 * 2 1 4 4 N 1.46501 * 109.46973 * 239.99494 * 2 1 3 5 5 C 1.34784 * 119.99660 * 84.73117 * 4 2 1 6 6 O 1.21279 * 119.99766 * 0.26631 * 5 4 2 7 7 C 1.50699 * 119.99803 * 180.27777 * 5 4 2 8 8 N 1.46507 * 109.46978 * 179.97438 * 7 5 4 9 9 C 1.34759 * 124.17624 * 269.72514 * 8 7 5 10 10 O 1.21236 * 127.16059 * 359.97438 * 9 8 7 11 11 C 1.51588 * 105.68226 * 179.97438 * 9 8 7 12 12 N 1.47310 * 103.59175 * 0.32103 * 11 9 8 13 13 C 1.33791 * 124.17345 * 90.01954 * 8 7 5 14 14 O 1.21532 * 123.77319 * 359.97230 * 13 8 7 15 15 C 1.52998 * 109.47041 * 120.00195 * 2 1 3 16 16 C 1.53035 * 109.46562 * 60.06376 * 15 2 1 17 17 C 1.53188 * 109.31720 * 178.61554 * 16 15 2 18 18 N 1.46926 * 108.77607 * 54.63509 * 17 16 15 19 19 C 1.36933 * 120.63093 * 126.41383 * 18 17 16 20 20 H 1.08003 * 120.00039 * 331.80993 * 19 18 17 21 21 C 1.38810 * 120.00187 * 151.80755 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08690 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.08561 * 21 19 18 24 24 H 1.48496 * 109.47448 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47303 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47192 * 300.00241 * 23 21 19 27 27 C 1.46928 * 118.73941 * 306.39285 * 18 17 16 28 28 C 1.53042 * 109.45933 * 299.99541 * 15 2 1 29 29 H 1.08999 * 109.47637 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46893 * 300.00384 * 1 2 3 31 31 H 1.08999 * 109.47026 * 59.99885 * 1 2 3 32 32 H 0.96997 * 120.00699 * 265.00185 * 4 2 1 33 33 H 1.09003 * 109.46989 * 299.99396 * 7 5 4 34 34 H 1.08998 * 109.47296 * 59.99573 * 7 5 4 35 35 H 1.09000 * 110.76676 * 241.71203 * 11 9 8 36 36 H 1.09004 * 110.56214 * 118.83203 * 11 9 8 37 37 H 0.96994 * 126.68652 * 179.76717 * 12 11 9 38 38 H 1.09005 * 109.46383 * 180.02562 * 15 2 1 39 39 H 1.09002 * 109.49755 * 298.57182 * 16 15 2 40 40 H 1.09006 * 109.49523 * 58.66038 * 16 15 2 41 41 H 1.08994 * 109.58686 * 294.84925 * 17 16 15 42 42 H 1.09002 * 109.70590 * 174.49310 * 17 16 15 43 43 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58201 * 293.82306 * 27 18 17 45 45 H 1.08999 * 109.58585 * 173.39127 * 27 18 17 46 46 H 1.08997 * 109.50089 * 301.33736 * 28 15 2 47 47 H 1.09000 * 109.49943 * 61.40433 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1961 5 6 2.1418 -0.0197 -2.3585 6 8 1.8533 1.1570 -2.4130 7 6 2.6381 -0.7317 -3.5905 8 7 2.6819 0.2082 -4.7134 9 6 1.6580 0.4204 -5.5634 10 8 0.5682 -0.1107 -5.5442 11 6 2.1521 1.4611 -6.5486 12 7 3.5288 1.7348 -6.1015 13 6 3.7455 0.9578 -5.0250 14 8 4.7910 0.9375 -4.4058 15 6 2.0399 -0.7213 1.2492 16 6 1.5310 -2.1645 1.2482 17 6 2.0718 -2.8934 2.4823 18 7 1.7085 -2.1263 3.6816 19 6 1.0454 -2.7258 4.7189 20 1 0.3978 -3.5694 4.5303 21 6 1.2054 -2.2495 6.0128 22 7 2.2195 -1.4625 6.3036 23 14 -0.0184 -2.7253 7.3414 24 1 -0.0267 -4.2016 7.5012 25 1 0.3729 -2.0901 8.6254 26 1 -1.3750 -2.2618 6.9537 27 6 2.0705 -0.7039 3.7470 28 6 1.5297 0.0004 2.4986 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6319 -1.1526 33 1 3.6382 -1.1239 -3.4053 34 1 1.9642 -1.5539 -3.8313 35 1 1.5444 2.3643 -6.4939 36 1 2.1506 1.0600 -7.5621 37 1 4.1565 2.3547 -6.5047 38 1 3.1300 -0.7208 1.2493 39 1 0.4413 -2.1661 1.2732 40 1 1.8754 -2.6711 0.3465 41 1 3.1568 -2.9722 2.4138 42 1 1.6360 -3.8908 2.5405 43 1 2.3312 -1.1293 7.2077 44 1 3.1554 -0.6042 3.7816 45 1 1.6316 -0.2557 4.6384 46 1 1.8731 1.0348 2.4871 47 1 0.4400 -0.0210 2.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508083319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:18 Heat of formation + Delta-G solvation = -54.047112 kcal Electronic energy + Delta-G solvation = -29984.135199 eV Core-core repulsion = 25782.600417 eV Total energy + Delta-G solvation = -4201.534782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.72476 -39.96981 -38.92754 -38.09066 -36.45191 -35.45493 -34.89142 -32.95275 -31.33693 -29.94444 -29.28949 -28.54064 -27.76826 -25.42674 -23.55165 -23.27970 -22.47049 -21.70593 -20.51838 -20.24706 -18.72756 -18.41883 -18.07894 -17.19796 -16.79217 -16.57059 -16.29787 -15.67456 -15.54174 -15.12589 -14.79736 -14.55055 -14.40554 -14.36660 -14.17902 -13.81627 -13.61321 -13.47518 -13.19121 -12.92201 -12.49325 -12.38770 -12.13994 -11.66682 -11.41861 -11.38278 -11.24362 -10.90771 -10.79050 -10.70363 -10.66802 -10.45422 -10.18687 -10.11056 -9.99401 -9.93439 -9.73494 -9.50411 -9.40447 -9.04531 -8.45609 -6.65856 -5.77996 -3.20619 1.25618 1.67025 2.44452 2.56419 2.72272 3.17336 3.38642 3.44688 3.45739 3.57484 4.31216 4.47582 4.50524 4.53111 4.67171 4.78418 4.98369 5.06287 5.14073 5.19848 5.32833 5.40041 5.52564 5.66026 5.72725 5.84269 6.02594 6.10470 6.14710 6.27162 6.32209 6.37858 6.40998 6.52855 6.60322 6.63441 6.73114 6.77565 6.81830 6.94731 6.99151 7.37115 7.41588 7.67301 7.72133 7.79888 8.07187 8.46277 9.22402 9.86006 10.42878 11.30431 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.002158 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.133084 B =12969.167913 C =13203.939550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.083 0.917 4 N -0.715 5.715 5 C 0.500 3.500 6 O -0.535 6.535 7 C 0.098 3.902 8 N -0.561 5.561 9 C 0.526 3.474 10 O -0.466 6.466 11 C 0.066 3.934 12 N -0.728 5.728 13 C 0.707 3.293 14 O -0.538 6.538 15 C -0.085 4.085 16 C -0.129 4.129 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.401 0.599 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.442 0.558 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 4.186 -27.289 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.101 0.899 4 N -0.367 5.367 5 C 0.284 3.716 6 O -0.411 6.411 7 C -0.027 4.027 8 N -0.307 5.307 9 C 0.313 3.687 10 O -0.335 6.335 11 C -0.062 4.062 12 N -0.393 5.393 13 C 0.408 3.592 14 O -0.410 6.410 15 C -0.104 4.104 16 C -0.168 4.168 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.237 0.763 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.287 0.713 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.721 4.720 -26.718 27.141 hybrid contribution -0.216 -0.349 0.595 0.723 sum 0.506 4.371 -26.123 26.491 Atomic orbital electron populations 1.22220 0.95222 1.02429 1.02112 1.21161 0.94278 0.96977 0.83303 0.89855 1.46138 1.66742 1.14347 1.09494 1.20650 0.78224 0.87797 0.84904 1.90714 1.49752 1.15740 1.84910 1.21496 1.06151 0.91283 0.83770 1.45795 1.15497 1.40537 1.28843 1.20893 0.83665 0.82318 0.81831 1.90842 1.19617 1.50987 1.72054 1.22444 0.84221 0.99981 0.99521 1.45342 1.16010 1.46096 1.31861 1.15760 0.83201 0.79065 0.81219 1.91041 1.26100 1.68821 1.55075 1.21327 1.00118 0.95758 0.93207 1.22124 1.01257 0.94978 0.98454 1.20877 0.96174 0.94286 0.86769 1.44031 1.66794 1.05072 1.15523 1.19127 1.19091 1.14409 0.85592 0.91819 1.25045 0.97073 1.00470 0.97073 1.70017 1.27847 1.37500 1.19366 0.86381 0.81218 0.78087 0.81136 1.20915 1.21662 1.21051 1.20770 0.96405 0.83706 0.94551 1.22260 1.00994 0.97994 0.96093 0.92015 0.90970 0.93079 0.76295 0.85420 0.85627 0.85710 0.85784 0.71335 0.91321 0.91658 0.93756 0.96652 0.92897 0.93584 0.96501 0.89445 0.93197 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.78 37.15 0.33 -1.93 16 2 C 0.15 2.07 2.40 -67.93 -0.16 1.90 16 3 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 4 N -0.71 -8.46 5.00 -53.81 -0.27 -8.73 16 5 C 0.50 6.42 7.86 -10.98 -0.09 6.33 16 6 O -0.53 -8.95 16.10 5.56 0.09 -8.86 16 7 C 0.10 0.90 6.18 -5.19 -0.03 0.87 16 8 N -0.56 -5.51 2.09 -122.02 -0.26 -5.77 16 9 C 0.53 4.64 8.32 -10.56 -0.09 4.55 16 10 O -0.47 -5.43 17.75 5.60 0.10 -5.33 16 11 C 0.07 0.27 7.97 -4.31 -0.03 0.24 16 12 N -0.73 -4.16 6.58 -65.73 -0.43 -4.59 16 13 C 0.71 7.30 8.62 -88.02 -0.76 6.54 16 14 O -0.54 -7.57 17.48 5.34 0.09 -7.48 16 15 C -0.08 -1.33 2.14 -90.58 -0.19 -1.53 16 16 C -0.13 -2.01 4.81 -26.62 -0.13 -2.14 16 17 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 18 N -0.59 -14.46 2.99 -172.32 -0.52 -14.98 16 19 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 20 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -26.13 11.20 55.49 0.62 -25.51 16 23 Si 0.90 21.61 29.59 -169.99 -5.03 16.59 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 28 C -0.13 -2.46 4.97 -26.61 -0.13 -2.59 16 29 H 0.06 0.83 6.46 -51.93 -0.34 0.49 16 30 H 0.07 1.03 6.46 -51.92 -0.34 0.69 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 3.76 6.84 -40.82 -0.28 3.48 16 33 H 0.13 0.97 7.86 -51.93 -0.41 0.56 16 34 H 0.13 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.44 1.40 8.96 -40.82 -0.37 1.03 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.07 6.51 -51.93 -0.34 0.73 16 40 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.15 6.51 -51.93 -0.34 0.81 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -36.87 377.30 -8.26 -45.13 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.78 Total: 1.74 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -1.56 Total: 12.10 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.85 Total: -59.58 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.28 Total: -21.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.87 -8.26 -45.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508083319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.922 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds