Wall clock time and date at job start Tue Mar 31 2020 22:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47637 * 2 1 4 4 N 1.46501 * 109.46973 * 239.99494 * 2 1 3 5 5 C 1.34784 * 119.99660 * 84.73117 * 4 2 1 6 6 O 1.21279 * 119.99766 * 0.26631 * 5 4 2 7 7 C 1.50699 * 119.99803 * 180.27777 * 5 4 2 8 8 N 1.46507 * 109.46978 * 179.97438 * 7 5 4 9 9 C 1.34759 * 124.17624 * 269.72514 * 8 7 5 10 10 O 1.21236 * 127.16059 * 359.97438 * 9 8 7 11 11 C 1.51588 * 105.68226 * 179.97438 * 9 8 7 12 12 N 1.47310 * 103.59175 * 0.32103 * 11 9 8 13 13 C 1.33791 * 124.17345 * 90.01954 * 8 7 5 14 14 O 1.21532 * 123.77319 * 359.97230 * 13 8 7 15 15 C 1.52998 * 109.47041 * 120.00195 * 2 1 3 16 16 C 1.53035 * 109.46562 * 60.06376 * 15 2 1 17 17 C 1.53188 * 109.31720 * 178.61554 * 16 15 2 18 18 N 1.46926 * 108.77607 * 54.63509 * 17 16 15 19 19 C 1.36933 * 120.63093 * 126.41383 * 18 17 16 20 20 H 1.08003 * 120.00039 * 331.80993 * 19 18 17 21 21 C 1.38810 * 120.00187 * 151.80755 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08690 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.08561 * 21 19 18 24 24 H 1.48496 * 109.47448 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47303 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47192 * 300.00241 * 23 21 19 27 27 C 1.46928 * 118.73941 * 306.39285 * 18 17 16 28 28 C 1.53042 * 109.45933 * 299.99541 * 15 2 1 29 29 H 1.08999 * 109.47637 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46893 * 300.00384 * 1 2 3 31 31 H 1.08999 * 109.47026 * 59.99885 * 1 2 3 32 32 H 0.96997 * 120.00699 * 265.00185 * 4 2 1 33 33 H 1.09003 * 109.46989 * 299.99396 * 7 5 4 34 34 H 1.08998 * 109.47296 * 59.99573 * 7 5 4 35 35 H 1.09000 * 110.76676 * 241.71203 * 11 9 8 36 36 H 1.09004 * 110.56214 * 118.83203 * 11 9 8 37 37 H 0.96994 * 126.68652 * 179.76717 * 12 11 9 38 38 H 1.09005 * 109.46383 * 180.02562 * 15 2 1 39 39 H 1.09002 * 109.49755 * 298.57182 * 16 15 2 40 40 H 1.09006 * 109.49523 * 58.66038 * 16 15 2 41 41 H 1.08994 * 109.58686 * 294.84925 * 17 16 15 42 42 H 1.09002 * 109.70590 * 174.49310 * 17 16 15 43 43 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58201 * 293.82306 * 27 18 17 45 45 H 1.08999 * 109.58585 * 173.39127 * 27 18 17 46 46 H 1.08997 * 109.50089 * 301.33736 * 28 15 2 47 47 H 1.09000 * 109.49943 * 61.40433 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1961 5 6 2.1418 -0.0197 -2.3585 6 8 1.8533 1.1570 -2.4130 7 6 2.6381 -0.7317 -3.5905 8 7 2.6819 0.2082 -4.7134 9 6 1.6580 0.4204 -5.5634 10 8 0.5682 -0.1107 -5.5442 11 6 2.1521 1.4611 -6.5486 12 7 3.5288 1.7348 -6.1015 13 6 3.7455 0.9578 -5.0250 14 8 4.7910 0.9375 -4.4058 15 6 2.0399 -0.7213 1.2492 16 6 1.5310 -2.1645 1.2482 17 6 2.0718 -2.8934 2.4823 18 7 1.7085 -2.1263 3.6816 19 6 1.0454 -2.7258 4.7189 20 1 0.3978 -3.5694 4.5303 21 6 1.2054 -2.2495 6.0128 22 7 2.2195 -1.4625 6.3036 23 14 -0.0184 -2.7253 7.3414 24 1 -0.0267 -4.2016 7.5012 25 1 0.3729 -2.0901 8.6254 26 1 -1.3750 -2.2618 6.9537 27 6 2.0705 -0.7039 3.7470 28 6 1.5297 0.0004 2.4986 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6319 -1.1526 33 1 3.6382 -1.1239 -3.4053 34 1 1.9642 -1.5539 -3.8313 35 1 1.5444 2.3643 -6.4939 36 1 2.1506 1.0600 -7.5621 37 1 4.1565 2.3547 -6.5047 38 1 3.1300 -0.7208 1.2493 39 1 0.4413 -2.1661 1.2732 40 1 1.8754 -2.6711 0.3465 41 1 3.1568 -2.9722 2.4138 42 1 1.6360 -3.8908 2.5405 43 1 2.3312 -1.1293 7.2077 44 1 3.1554 -0.6042 3.7816 45 1 1.6316 -0.2557 4.6384 46 1 1.8731 1.0348 2.4871 47 1 0.4400 -0.0210 2.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508083319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:17 Heat of formation + Delta-G solvation = -82.519254 kcal Electronic energy + Delta-G solvation = -29985.369844 eV Core-core repulsion = 25782.600417 eV Total energy + Delta-G solvation = -4202.769427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38844 -41.06934 -39.68167 -39.48579 -37.20988 -36.88391 -35.63126 -34.51978 -32.92330 -31.49445 -30.66537 -29.43022 -28.36286 -27.13834 -25.02038 -24.02664 -23.90663 -22.86511 -21.85766 -21.18428 -20.17087 -19.13626 -18.93209 -18.53071 -17.90218 -17.49631 -17.22660 -16.78996 -16.39528 -16.30458 -16.05711 -15.70147 -15.59535 -15.35040 -15.29168 -15.03487 -14.95884 -14.67939 -14.22869 -14.10767 -14.06420 -13.73364 -13.26742 -13.04724 -12.95143 -12.92446 -12.58085 -12.48072 -12.18791 -12.16006 -11.96505 -11.74852 -11.66520 -11.57428 -11.38712 -11.17617 -10.97468 -10.71220 -10.50902 -10.40249 -10.15905 -8.65285 -7.85676 -5.30814 0.61236 1.02902 1.46917 1.47441 1.49522 1.55924 1.80759 2.22645 2.31933 2.52404 3.04296 3.28685 3.59797 3.70073 3.75647 3.82820 3.87592 4.04817 4.15228 4.30560 4.32157 4.32734 4.37396 4.41250 4.58628 4.61288 4.67022 4.73759 4.79100 4.92480 4.95536 5.03731 5.16050 5.22657 5.28303 5.31817 5.44383 5.47211 5.58582 5.68105 5.80646 5.82476 5.97298 6.32140 6.41237 6.46227 7.06802 7.12815 7.17001 7.89665 8.40871 9.20396 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.002158 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.133084 B =12969.167913 C =13203.939550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.066 0.934 4 N -0.705 5.705 5 C 0.497 3.503 6 O -0.578 6.578 7 C 0.098 3.902 8 N -0.568 5.568 9 C 0.517 3.483 10 O -0.500 6.500 11 C 0.076 3.924 12 N -0.708 5.708 13 C 0.698 3.302 14 O -0.585 6.585 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.139 3.861 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.068 0.932 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.275 1.275 25 H -0.297 1.297 26 H -0.279 1.279 27 C 0.178 3.822 28 C -0.122 4.122 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.416 0.584 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.455 0.545 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.249 0.751 44 H -0.008 1.008 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 3.557 -30.255 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.084 0.916 4 N -0.358 5.358 5 C 0.283 3.717 6 O -0.457 6.457 7 C -0.027 4.027 8 N -0.313 5.313 9 C 0.307 3.693 10 O -0.371 6.371 11 C -0.050 4.050 12 N -0.374 5.374 13 C 0.399 3.601 14 O -0.461 6.461 15 C -0.093 4.093 16 C -0.154 4.154 17 C 0.014 3.986 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.085 0.915 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.205 1.205 27 C 0.052 3.948 28 C -0.162 4.162 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.254 0.746 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.302 0.698 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.010 0.990 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.137 4.071 -29.758 30.035 hybrid contribution 0.074 -0.162 1.470 1.481 sum -0.062 3.909 -28.288 28.556 Atomic orbital electron populations 1.22147 0.94778 1.02821 1.01544 1.20810 0.94402 0.96007 0.83388 0.91624 1.45970 1.66281 1.14926 1.08639 1.21298 0.77225 0.87389 0.85833 1.90691 1.51667 1.17734 1.85654 1.21637 1.07505 0.91394 0.82195 1.45965 1.15818 1.40553 1.28967 1.21648 0.82928 0.82575 0.82133 1.90824 1.20756 1.52487 1.73058 1.22718 0.82881 0.99567 0.99882 1.45339 1.16943 1.44842 1.30237 1.16016 0.82697 0.79536 0.81897 1.91005 1.27798 1.70457 1.56889 1.21161 0.99802 0.95780 0.92590 1.21984 1.01020 0.94419 0.98007 1.21082 0.96188 0.94608 0.86749 1.44310 1.66920 1.05765 1.16375 1.19484 1.18881 1.14151 0.86457 0.91477 1.25801 0.98714 1.01118 0.99237 1.70179 1.29656 1.39133 1.19341 0.85374 0.79097 0.77978 0.78203 1.20020 1.22294 1.20474 1.20549 0.94715 0.84012 0.95514 1.22052 1.00720 0.98281 0.95099 0.91063 0.91556 0.93640 0.74563 0.83798 0.82966 0.83336 0.81542 0.69814 0.91656 0.91725 0.89429 0.96965 0.92624 0.94234 0.98975 0.93078 0.92216 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 8.78 71.98 0.63 -3.44 16 2 C 0.16 4.25 2.40 44.99 0.11 4.36 16 3 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 4 N -0.70 -15.19 5.00 -442.54 -2.21 -17.40 16 5 C 0.50 12.04 7.86 87.66 0.69 12.73 16 6 O -0.58 -19.05 16.10 -3.03 -0.05 -19.10 16 7 C 0.10 1.61 6.18 85.63 0.53 2.14 16 8 N -0.57 -10.20 2.09 -777.21 -1.63 -11.82 16 9 C 0.52 8.00 8.32 87.94 0.73 8.74 16 10 O -0.50 -10.80 17.75 -2.89 -0.05 -10.85 16 11 C 0.08 0.36 7.97 85.76 0.68 1.04 16 12 N -0.71 -6.27 6.58 -480.31 -3.16 -9.44 16 13 C 0.70 13.43 8.62 179.44 1.55 14.98 16 14 O -0.58 -16.22 17.48 -3.81 -0.07 -16.28 16 15 C -0.07 -2.23 2.14 -10.77 -0.02 -2.25 16 16 C -0.12 -3.33 4.81 30.67 0.15 -3.18 16 17 C 0.14 5.40 6.52 86.36 0.56 5.96 16 18 N -0.61 -30.11 2.99 -699.10 -2.09 -32.21 16 19 C -0.26 -14.17 9.58 84.03 0.81 -13.36 16 20 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 21 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 22 N -0.94 -56.04 11.20 21.65 0.24 -55.79 16 23 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.18 8.59 5.30 86.36 0.46 9.05 16 28 C -0.12 -4.49 4.97 30.67 0.15 -4.34 16 29 H 0.07 1.73 6.46 -2.39 -0.02 1.72 16 30 H 0.07 1.81 6.46 -2.38 -0.02 1.80 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.42 6.42 6.84 -92.71 -0.63 5.79 16 33 H 0.14 1.89 7.86 -2.39 -0.02 1.87 16 34 H 0.15 1.65 8.00 -2.39 -0.02 1.63 16 35 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.17 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.45 1.68 8.96 -92.71 -0.83 0.85 16 38 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.06 1.93 6.51 -2.39 -0.02 1.92 16 40 H 0.09 1.80 6.46 -2.38 -0.02 1.79 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 2.26 6.51 -2.39 -0.02 2.25 16 Total: -1.00 -84.07 377.30 0.01 -84.06 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.44 Total: 11.91 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 7.44 Total: 29.83 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -8.85 Total: -126.66 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.17 Total: -46.24 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -84.07 0.01 -84.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508083319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.542 kcal (2) G-P(sol) polarization free energy of solvation -84.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds