Wall clock time and date at job start Tue Mar 31 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00363 * 2 1 4 4 O 1.20825 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00022 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.54545 * 54.89608 * 5 3 2 7 7 C 1.53099 * 109.51122 * 294.78415 * 5 3 2 8 8 N 1.47012 * 109.26045 * 183.21758 * 7 5 3 9 9 C 1.38574 * 111.00008 * 182.39017 * 8 7 5 10 10 N 1.31224 * 126.47583 * 272.73723 * 9 8 7 11 11 N 1.28524 * 109.85828 * 179.97438 * 10 9 8 12 12 C 1.30296 * 110.05851 * 359.97438 * 11 10 9 13 13 C 1.50694 * 126.34926 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47404 * 89.97220 * 13 12 11 15 15 C 1.50703 * 109.47408 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00319 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99822 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00342 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46659 * 59.99991 * 19 17 15 21 21 H 1.48499 * 109.47430 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47232 * 300.00201 * 19 17 15 23 23 N 1.36452 * 126.47173 * 92.41941 * 9 8 7 24 24 C 1.46496 * 127.13605 * 0.03804 * 23 9 8 25 25 C 1.47019 * 110.75066 * 58.61642 * 8 7 5 26 26 C 1.53101 * 109.25747 * 301.38069 * 25 8 7 27 27 H 1.08997 * 109.50216 * 176.82782 * 26 25 8 28 28 C 1.52999 * 109.50874 * 296.91762 * 26 25 8 29 29 O 1.43016 * 109.25688 * 56.85424 * 26 25 8 30 30 H 1.09000 * 109.47296 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47433 * 300.00360 * 1 2 3 32 32 H 1.09002 * 109.46910 * 60.00253 * 1 2 3 33 33 H 1.09000 * 109.50407 * 63.28012 * 7 5 3 34 34 H 1.09005 * 109.50090 * 303.15273 * 7 5 3 35 35 H 1.09002 * 109.47117 * 209.97365 * 13 12 11 36 36 H 1.09007 * 109.47090 * 329.97160 * 13 12 11 37 37 H 1.09002 * 109.47103 * 300.00155 * 14 13 12 38 38 H 1.09000 * 109.47341 * 60.00150 * 14 13 12 39 39 H 0.96997 * 119.99823 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47323 * 95.48869 * 24 23 9 41 41 H 1.09011 * 109.47124 * 215.48902 * 24 23 9 42 42 H 1.09004 * 109.47212 * 335.48340 * 24 23 9 43 43 H 1.09001 * 109.50652 * 61.31749 * 25 8 7 44 44 H 1.08999 * 109.50245 * 181.44986 * 25 8 7 45 45 H 1.08994 * 109.46932 * 59.99884 * 28 26 25 46 46 H 1.08993 * 109.46968 * 180.02562 * 28 26 25 47 47 H 1.09005 * 109.46974 * 299.99844 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9617 0.7037 -0.8395 7 6 4.1081 0.6976 1.3111 8 7 5.5703 0.8474 1.3391 9 6 6.1049 0.2875 2.4885 10 7 6.2555 0.8821 3.6485 11 7 6.7825 0.0675 4.4915 12 6 6.9971 -1.0857 3.9243 13 6 7.6005 -2.3031 4.5760 14 6 6.4895 -3.1545 5.1936 15 6 7.0930 -4.3717 5.8458 16 1 8.1621 -4.5230 5.8219 17 6 6.2803 -5.2926 6.4723 18 7 4.9783 -5.1091 6.5001 19 14 7.0283 -6.8016 7.2801 20 1 7.9743 -6.3764 8.3429 21 1 5.9499 -7.6286 7.8786 22 1 7.7555 -7.5998 6.2606 23 7 6.5685 -0.9880 2.6294 24 6 6.6028 -2.0348 1.6052 25 6 5.9515 2.2619 1.2156 26 6 5.3913 2.8233 -0.0940 27 1 5.6234 3.8860 -0.1631 28 6 6.0207 2.0849 -1.2771 29 8 3.9730 2.6408 -0.1170 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.8490 -0.3591 1.3780 34 1 3.6710 1.2342 2.1532 35 1 8.1339 -2.8891 3.8275 36 1 8.2952 -1.9910 5.3558 37 1 5.9561 -2.5685 5.9420 38 1 5.7948 -3.4666 4.4137 39 1 4.4065 -5.7571 6.9405 40 1 7.5848 -2.0486 1.1324 41 1 6.4088 -3.0026 2.0680 42 1 5.8403 -1.8324 0.8531 43 1 5.5438 2.8234 2.0562 44 1 7.0381 2.3470 1.2128 45 1 5.7870 1.0226 -1.2081 46 1 5.6218 2.4854 -2.2090 47 1 7.1020 2.2212 -1.2568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519964792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:29 Heat of formation + Delta-G solvation = -36.186642 kcal Electronic energy + Delta-G solvation = -30267.311708 eV Core-core repulsion = 26066.551414 eV Total energy + Delta-G solvation = -4200.760294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.73558 -41.14210 -39.85835 -36.87138 -36.17174 -34.91206 -33.85124 -33.06082 -31.82414 -30.32867 -28.55082 -27.84286 -27.40357 -26.17763 -25.37572 -24.56847 -22.30532 -21.90031 -20.94860 -20.18565 -19.70530 -18.44713 -17.69210 -17.01771 -16.73127 -16.56999 -16.38728 -16.12110 -15.91882 -15.12412 -14.97684 -14.90180 -14.75051 -14.50530 -13.75946 -13.68361 -13.41011 -13.24220 -13.11284 -12.80229 -12.59787 -12.37632 -12.34280 -12.26810 -12.17713 -11.74234 -11.41674 -11.23199 -11.16144 -11.12874 -11.01127 -10.74916 -10.66445 -10.47520 -10.23766 -10.00444 -9.94502 -9.81759 -9.29887 -9.15005 -8.45034 -8.37043 -6.09547 -4.14097 1.70829 1.92183 2.02414 2.36292 3.13366 3.28067 3.33423 3.35388 3.42010 3.63864 4.16321 4.31754 4.37524 4.39370 4.52303 4.69115 4.78543 4.81461 4.83280 4.89665 4.91806 4.96558 5.12358 5.22969 5.23695 5.26345 5.27403 5.35102 5.42481 5.47120 5.55557 5.62756 5.70921 5.86910 5.96178 6.09859 6.25459 6.33388 6.39053 6.55731 6.58612 6.81509 7.29323 7.38373 7.49086 7.62960 7.87167 8.24414 8.91685 9.05548 9.50841 11.01443 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.002823 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.222745 B = 9915.974171 C =11316.395321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.470 3.530 4 O -0.481 6.481 5 C 0.107 3.893 6 H 0.112 0.888 7 C 0.035 3.965 8 N -0.449 5.449 9 C 0.316 3.684 10 N -0.309 5.309 11 N -0.296 5.296 12 C 0.221 3.779 13 C -0.033 4.033 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.467 5.467 24 C 0.079 3.921 25 C 0.035 3.965 26 C 0.093 3.907 27 H 0.122 0.878 28 C -0.181 4.181 29 O -0.352 6.352 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 10.776 -19.777 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.310 3.690 4 O -0.366 6.366 5 C 0.047 3.953 6 H 0.129 0.871 7 C -0.093 4.093 8 N -0.174 5.174 9 C -0.041 4.041 10 N -0.153 5.153 11 N -0.135 5.135 12 C -0.046 4.046 13 C -0.072 4.072 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.160 5.160 24 C -0.064 4.064 25 C -0.092 4.092 26 C 0.035 3.965 27 H 0.140 0.860 28 C -0.238 4.238 29 O -0.270 6.270 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.546 11.972 -19.105 22.690 hybrid contribution -0.045 -1.653 0.059 1.654 sum -2.591 10.319 -19.046 21.816 Atomic orbital electron populations 1.23356 0.75289 1.04225 1.02805 1.86476 1.24103 1.32342 1.84087 1.22936 0.90717 0.81954 0.73422 1.90703 1.66475 1.36236 1.43152 1.21322 0.87919 0.86490 0.99554 0.87105 1.22761 0.86296 1.03486 0.96749 1.58737 1.09525 1.17998 1.31165 1.21988 1.05038 0.84839 0.92199 1.74501 1.17731 1.25963 0.97129 1.74066 1.16855 0.99202 1.23405 1.25690 0.99599 0.98745 0.80612 1.20485 1.00041 0.87985 0.98737 1.19068 0.92174 0.93545 0.95820 1.21092 0.93547 1.05972 1.35799 0.92301 1.25010 0.94799 0.98322 0.96074 1.69961 1.03250 1.36239 1.43600 0.86608 0.78768 0.82574 0.79771 1.20060 1.21270 1.20187 1.46152 1.46672 1.11082 1.12118 1.22050 1.03715 0.90333 0.90306 1.22845 1.02483 0.85361 0.98540 1.22507 0.79178 1.01188 0.93609 0.86001 1.22357 1.01733 1.01966 0.97746 1.88141 1.22743 1.22061 1.94101 0.87513 0.91539 0.91676 0.87907 0.91528 0.91016 0.89131 0.95625 0.96768 0.92772 0.90333 0.88455 0.89304 0.91071 0.88543 0.91074 0.91765 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.64 10.56 -39.25 -0.41 -4.05 16 3 C 0.47 5.54 7.29 36.00 0.26 5.80 16 4 O -0.48 -7.06 16.26 -25.45 -0.41 -7.47 16 5 C 0.11 1.10 2.93 -27.83 -0.08 1.02 16 6 H 0.11 0.90 6.49 -51.93 -0.34 0.56 16 7 C 0.04 0.41 4.85 -3.71 -0.02 0.39 16 8 N -0.45 -5.40 4.08 -174.20 -0.71 -6.11 16 9 C 0.32 5.00 6.75 -318.88 -2.15 2.85 16 10 N -0.31 -5.93 11.64 30.31 0.35 -5.58 16 11 N -0.30 -6.24 12.18 32.99 0.40 -5.84 16 12 C 0.22 4.22 7.32 -154.02 -1.13 3.09 16 13 C -0.03 -0.64 5.47 -27.89 -0.15 -0.79 16 14 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 15 C -0.53 -14.02 9.11 -34.44 -0.31 -14.34 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 19 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 N -0.47 -7.40 3.21 -121.46 -0.39 -7.79 16 24 C 0.08 0.91 10.88 59.84 0.65 1.56 16 25 C 0.04 0.37 4.74 -3.71 -0.02 0.36 16 26 C 0.09 0.79 3.92 -26.68 -0.10 0.69 16 27 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 28 C -0.18 -1.23 8.89 37.16 0.33 -0.90 16 29 O -0.35 -3.96 9.82 -55.10 -0.54 -4.51 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.24 7.98 -51.93 -0.41 0.82 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.19 8.07 -51.92 -0.42 0.77 16 42 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.07 0.89 7.96 -51.93 -0.41 0.47 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.52 6.12 -51.93 -0.32 0.20 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -34.74 391.60 -9.35 -44.09 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.36 Total: -2.44 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.89 Total: 3.29 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.39 Total: -50.59 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.37 Total: -16.03 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.74 -9.35 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519964792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.903 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds