Wall clock time and date at job start Tue Mar 31 2020 22:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47531 * 2 1 4 4 N 1.46495 * 109.46742 * 120.00114 * 2 1 3 5 5 C 1.34781 * 119.99920 * 274.99564 * 4 2 1 6 6 O 1.21272 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99833 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.47136 * 180.02562 * 7 5 4 9 9 C 1.34763 * 124.17749 * 89.99314 * 8 7 5 10 10 O 1.21236 * 127.16354 * 0.02562 * 9 8 7 11 11 C 1.51586 * 105.68418 * 179.97438 * 9 8 7 12 12 N 1.47315 * 103.59172 * 0.02562 * 11 9 8 13 13 C 1.33794 * 124.17424 * 269.70026 * 8 7 5 14 14 O 1.21533 * 123.77058 * 0.03290 * 13 8 7 15 15 C 1.53000 * 109.47052 * 239.99766 * 2 1 3 16 16 H 1.08997 * 109.49896 * 184.93777 * 15 2 1 17 17 C 1.53041 * 109.49691 * 64.83905 * 15 2 1 18 18 C 1.53044 * 109.53844 * 178.68116 * 17 15 2 19 19 C 1.52758 * 109.38076 * 61.24213 * 18 17 15 20 20 N 1.46922 * 109.01011 * 305.58661 * 19 18 17 21 21 C 1.36936 * 120.63535 * 233.58655 * 20 19 18 22 22 H 1.07995 * 120.00699 * 151.98781 * 21 20 19 23 23 C 1.38813 * 119.99520 * 331.98956 * 21 20 19 24 24 N 1.31617 * 120.00332 * 342.73394 * 23 21 20 25 25 Si 1.86800 * 119.99785 * 163.01153 * 23 21 20 26 26 H 1.48499 * 109.47111 * 265.93444 * 25 23 21 27 27 H 1.48497 * 109.47463 * 25.93760 * 25 23 21 28 28 H 1.48505 * 109.47209 * 145.94019 * 25 23 21 29 29 C 1.46928 * 118.73879 * 53.30974 * 20 19 18 30 30 H 1.09003 * 109.46966 * 59.99753 * 1 2 3 31 31 H 1.08998 * 109.47531 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46975 * 300.00235 * 1 2 3 33 33 H 0.97000 * 120.00630 * 95.00388 * 4 2 1 34 34 H 1.09007 * 109.47211 * 300.00002 * 7 5 4 35 35 H 1.08995 * 109.47283 * 60.00029 * 7 5 4 36 36 H 1.08999 * 110.60048 * 118.52727 * 11 9 8 37 37 H 1.09001 * 110.59837 * 241.32162 * 11 9 8 38 38 H 0.96998 * 126.69012 * 180.02562 * 12 11 9 39 39 H 1.08993 * 109.46188 * 298.70415 * 17 15 2 40 40 H 1.09008 * 109.45650 * 58.67725 * 17 15 2 41 41 H 1.09001 * 109.49819 * 181.31816 * 18 17 15 42 42 H 1.09005 * 109.49635 * 301.38313 * 18 17 15 43 43 H 1.08998 * 109.50718 * 185.70599 * 19 18 17 44 44 H 1.09003 * 109.43353 * 65.42501 * 19 18 17 45 45 H 0.96993 * 120.00508 * 180.27754 * 24 23 21 46 46 H 1.09005 * 109.58342 * 66.42824 * 29 20 19 47 47 H 1.08993 * 109.59187 * 186.85407 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6498 -0.7286 3.5875 8 7 2.6985 0.2126 4.7091 9 6 1.6766 0.4291 5.5606 10 8 0.5852 -0.0985 5.5441 11 6 2.1761 1.4685 6.5444 12 7 3.5502 1.7432 6.0899 13 6 3.7649 0.9593 5.0180 14 8 4.8093 0.9350 4.3969 15 6 2.0400 -0.7213 -1.2492 16 1 3.1264 -0.7988 -1.2066 17 6 1.6320 0.0665 -2.4962 18 6 2.1698 -0.6368 -3.7446 19 6 1.5658 -2.0368 -3.8376 20 7 1.8248 -2.7541 -2.5818 21 6 2.4282 -3.9833 -2.5920 22 1 3.0134 -4.3047 -1.7431 23 6 2.2878 -4.8162 -3.6936 24 7 1.3274 -4.5969 -4.5664 25 14 3.4573 -6.2530 -3.9331 26 1 4.5799 -5.8364 -4.8114 27 1 3.9921 -6.6810 -2.6156 28 1 2.7296 -7.3839 -4.5630 29 6 1.4295 -2.1248 -1.3144 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.2490 -1.6318 1.1527 34 1 1.9775 -1.5509 3.8325 35 1 3.6491 -1.1204 3.3979 36 1 1.5673 2.3710 6.4909 37 1 2.1775 1.0677 7.5581 38 1 4.1792 2.3647 6.4887 39 1 0.5449 0.1223 -2.5509 40 1 2.0451 1.0737 -2.4407 41 1 1.8989 -0.0627 -4.6307 42 1 3.2551 -0.7145 -3.6793 43 1 2.0229 -2.5760 -4.6674 44 1 0.4906 -1.9580 -3.9984 45 1 1.2268 -5.1813 -5.3339 46 1 0.3429 -2.0533 -1.2652 47 1 1.7965 -2.7220 -0.4797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566967110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:04 Heat of formation + Delta-G solvation = -55.010844 kcal Electronic energy + Delta-G solvation = -30190.305656 eV Core-core repulsion = 25988.729084 eV Total energy + Delta-G solvation = -4201.576573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.67005 -39.89163 -38.87311 -38.06997 -36.40212 -35.36788 -34.81692 -33.08086 -31.31438 -30.47197 -28.99722 -28.10509 -27.68149 -25.31965 -23.99672 -23.24387 -22.30566 -21.69861 -20.46529 -20.15880 -18.71079 -18.35257 -17.97767 -17.14266 -16.84485 -16.49031 -16.19869 -15.62198 -15.44402 -15.06847 -14.91769 -14.49383 -14.43643 -14.35240 -14.16897 -13.82686 -13.52557 -13.41244 -13.16247 -12.81336 -12.39664 -12.33303 -12.21145 -11.81130 -11.63792 -11.33907 -11.00766 -10.94170 -10.73024 -10.61640 -10.58098 -10.48347 -10.18604 -10.11537 -9.93299 -9.89222 -9.74255 -9.53631 -9.40865 -8.98467 -8.47795 -6.68134 -5.80702 -3.23284 1.31089 1.72576 2.51373 2.61824 2.76986 3.24452 3.36144 3.43458 3.44346 3.62376 4.37475 4.46427 4.54988 4.58529 4.73193 4.88522 5.01829 5.09105 5.21403 5.25322 5.38398 5.41505 5.56626 5.68218 5.70375 5.85112 6.00210 6.11886 6.22023 6.24701 6.33323 6.36270 6.47929 6.56921 6.60966 6.65831 6.70116 6.76828 6.86886 6.97261 7.00481 7.39446 7.47709 7.66150 7.76939 7.77155 8.14009 8.42773 9.19085 9.82775 10.39382 11.27647 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.002569 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.455299 B =10895.426909 C =11537.203310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.081 0.919 4 N -0.713 5.713 5 C 0.502 3.498 6 O -0.537 6.537 7 C 0.097 3.903 8 N -0.560 5.560 9 C 0.525 3.475 10 O -0.465 6.465 11 C 0.066 3.934 12 N -0.728 5.728 13 C 0.707 3.293 14 O -0.538 6.538 15 C -0.113 4.113 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.279 1.279 28 H -0.291 1.291 29 C 0.151 3.849 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.404 0.596 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.442 0.558 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 12.136 20.728 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 H 0.099 0.901 4 N -0.365 5.365 5 C 0.286 3.714 6 O -0.414 6.414 7 C -0.028 4.028 8 N -0.306 5.306 9 C 0.312 3.688 10 O -0.334 6.334 11 C -0.062 4.062 12 N -0.393 5.393 13 C 0.408 3.592 14 O -0.411 6.411 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.204 1.204 28 H -0.218 1.218 29 C 0.025 3.975 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.286 0.714 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.084 12.475 20.189 23.757 hybrid contribution 0.919 -0.903 -0.103 1.293 sum 2.003 11.572 20.086 23.267 Atomic orbital electron populations 1.22254 0.95280 1.02822 1.01888 1.21059 0.94215 0.96725 0.83342 0.90056 1.46088 1.66520 1.14469 1.09456 1.20623 0.78170 0.87721 0.84876 1.90698 1.50086 1.15767 1.84876 1.21514 1.06258 0.91257 0.83768 1.45797 1.15368 1.40572 1.28892 1.20891 0.83738 0.82306 0.81821 1.90845 1.19474 1.51080 1.72018 1.22440 0.84247 1.00001 0.99484 1.45339 1.16174 1.45666 1.32166 1.15763 0.83205 0.79050 0.81217 1.91040 1.26265 1.68889 1.54899 1.21968 1.00984 0.98064 0.92404 0.90881 1.21419 1.00505 0.97220 0.94688 1.22110 1.00639 0.99588 0.95804 1.20697 0.96670 0.88036 0.90219 1.44007 1.69844 1.17535 0.99927 1.19171 1.23528 0.92200 1.03444 0.91735 1.25029 0.97401 0.97665 0.99464 1.70036 1.30136 1.39632 1.14728 0.86293 0.80623 0.81969 0.77964 1.21497 1.20397 1.21799 1.20997 0.96222 0.90271 0.90028 0.91362 0.91455 0.92975 0.75998 0.85504 0.85341 0.85761 0.85788 0.71381 0.92228 0.93558 0.93192 0.92813 0.89633 0.96482 0.93633 0.95602 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.76 37.16 0.33 -2.00 16 2 C 0.15 2.19 2.35 -67.93 -0.16 2.03 16 3 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -9.25 5.01 -53.81 -0.27 -9.52 16 5 C 0.50 6.83 7.86 -10.98 -0.09 6.74 16 6 O -0.54 -9.18 16.09 5.56 0.09 -9.09 16 7 C 0.10 0.99 6.18 -5.19 -0.03 0.96 16 8 N -0.56 -5.91 2.09 -122.02 -0.26 -6.16 16 9 C 0.53 4.96 8.32 -10.56 -0.09 4.87 16 10 O -0.47 -5.73 17.76 5.60 0.10 -5.63 16 11 C 0.07 0.30 7.97 -4.31 -0.03 0.27 16 12 N -0.73 -4.51 6.58 -65.73 -0.43 -4.94 16 13 C 0.71 7.71 8.62 -88.02 -0.76 6.95 16 14 O -0.54 -7.90 17.48 5.34 0.09 -7.80 16 15 C -0.11 -1.85 2.27 -90.50 -0.21 -2.06 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.10 -1.65 4.89 -26.69 -0.13 -1.78 16 18 C -0.14 -2.68 6.06 -26.83 -0.16 -2.84 16 19 C 0.17 3.96 5.28 -3.94 -0.02 3.94 16 20 N -0.59 -14.21 3.00 -172.59 -0.52 -14.72 16 21 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 22 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 23 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 24 N -0.90 -25.78 11.21 55.49 0.62 -25.16 16 25 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 C 0.15 2.92 5.26 -3.71 -0.02 2.90 16 30 H 0.07 0.93 6.59 -51.93 -0.34 0.59 16 31 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.40 4.58 7.27 -40.82 -0.30 4.29 16 34 H 0.13 1.01 8.00 -51.92 -0.42 0.60 16 35 H 0.13 1.13 7.85 -51.93 -0.41 0.72 16 36 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.44 1.58 8.96 -40.82 -0.37 1.21 16 39 H 0.06 0.97 6.62 -51.93 -0.34 0.62 16 40 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 47 H 0.05 0.86 6.74 -51.93 -0.35 0.51 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -36.31 377.77 -8.31 -44.62 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.80 Total: 3.30 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -1.60 Total: 13.12 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.85 Total: -60.51 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.28 Total: -22.52 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.31 -8.31 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566967110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.395 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds