Wall clock time and date at job start Tue Mar 31 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46926 * 2 1 4 4 N 1.46495 * 109.47157 * 239.99816 * 2 1 3 5 5 C 1.34781 * 119.99990 * 85.00152 * 4 2 1 6 6 O 1.21283 * 120.00030 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00134 * 179.97438 * 5 4 2 8 8 N 1.46493 * 109.47315 * 179.97438 * 7 5 4 9 9 C 1.34776 * 124.17419 * 90.00164 * 8 7 5 10 10 O 1.21235 * 127.15770 * 359.93038 * 9 8 7 11 11 C 1.51581 * 105.68373 * 179.97438 * 9 8 7 12 12 N 1.47315 * 103.59289 * 0.02562 * 11 9 8 13 13 C 1.33794 * 124.18201 * 269.70277 * 8 7 5 14 14 O 1.21531 * 123.76861 * 0.04272 * 13 8 7 15 15 C 1.53001 * 109.46829 * 120.00005 * 2 1 3 16 16 H 1.09002 * 109.49432 * 179.97438 * 15 2 1 17 17 C 1.53041 * 109.49577 * 299.99776 * 15 2 1 18 18 C 1.53045 * 109.53426 * 181.34781 * 17 15 2 19 19 C 1.53188 * 109.31665 * 298.63498 * 18 17 15 20 20 N 1.46924 * 108.77313 * 54.63778 * 19 18 17 21 21 C 1.36939 * 120.63325 * 126.37112 * 20 19 18 22 22 H 1.08001 * 119.99743 * 208.01957 * 21 20 19 23 23 C 1.38804 * 119.99903 * 28.01480 * 21 20 19 24 24 N 1.31620 * 119.99909 * 17.53180 * 23 21 20 25 25 Si 1.86803 * 120.00190 * 197.52671 * 23 21 20 26 26 H 1.48502 * 109.46934 * 94.07065 * 25 23 21 27 27 H 1.48507 * 109.47089 * 214.07101 * 25 23 21 28 28 H 1.48503 * 109.47071 * 334.07096 * 25 23 21 29 29 C 1.46930 * 118.74093 * 306.39065 * 20 19 18 30 30 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47460 * 300.00333 * 1 2 3 32 32 H 1.09002 * 109.46997 * 60.00260 * 1 2 3 33 33 H 0.97000 * 120.00322 * 264.99867 * 4 2 1 34 34 H 1.08996 * 109.47092 * 300.00595 * 7 5 4 35 35 H 1.09004 * 109.46785 * 60.00097 * 7 5 4 36 36 H 1.09008 * 110.59870 * 118.52676 * 11 9 8 37 37 H 1.08995 * 110.60122 * 241.47141 * 11 9 8 38 38 H 0.97001 * 126.68574 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46241 * 301.37011 * 17 15 2 40 40 H 1.08997 * 109.45965 * 61.33417 * 17 15 2 41 41 H 1.09003 * 109.49417 * 58.59186 * 18 17 15 42 42 H 1.09010 * 109.49393 * 178.68094 * 18 17 15 43 43 H 1.09001 * 109.58773 * 294.85044 * 19 18 17 44 44 H 1.08994 * 109.70555 * 174.49159 * 19 18 17 45 45 H 0.97006 * 120.00194 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.58821 * 293.82534 * 29 20 19 47 47 H 1.08997 * 109.70880 * 173.46742 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6500 -0.7286 -3.5874 8 7 2.6986 0.2125 -4.7090 9 6 3.7708 0.9690 -5.0167 10 8 4.8361 0.9988 -4.4386 11 6 3.3673 1.7756 -6.2350 12 7 1.9847 1.3395 -6.4966 13 6 1.6862 0.4231 -5.5580 14 8 0.6150 -0.1465 -5.4866 15 6 2.0399 -0.7213 1.2493 16 1 3.1300 -0.7219 1.2495 17 6 1.5301 -0.0002 2.4992 18 6 2.0672 -0.7012 3.7492 19 6 1.5545 -2.1443 3.7806 20 7 1.9161 -2.8022 2.5177 21 6 2.6031 -3.9868 2.5197 22 1 3.2449 -4.2402 1.6888 23 6 2.4746 -4.8618 3.5895 24 7 1.4620 -4.7398 4.4214 25 14 3.7388 -6.2124 3.8486 26 1 4.7821 -5.7393 4.7936 27 1 3.0711 -7.4144 4.4096 28 1 4.3682 -6.5573 2.5485 29 6 1.5270 -2.1648 1.2523 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1526 34 1 3.6492 -1.1204 -3.3978 35 1 1.9777 -1.5509 -3.8325 36 1 3.3974 2.8429 -6.0155 37 1 4.0112 1.5390 -7.0820 38 1 1.4045 1.6492 -7.2095 39 1 1.8734 1.0342 2.4871 40 1 0.4404 -0.0209 2.5113 41 1 3.1570 -0.7026 3.7255 42 1 1.7229 -0.1732 4.6386 43 1 0.4706 -2.1447 3.8956 44 1 2.0105 -2.6783 4.6143 45 1 1.3720 -5.3515 5.1689 46 1 0.4408 -2.1667 1.1611 47 1 1.9648 -2.7099 0.4162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566967112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:13 Heat of formation + Delta-G solvation = -54.814595 kcal Electronic energy + Delta-G solvation = -30209.734454 eV Core-core repulsion = 26008.166391 eV Total energy + Delta-G solvation = -4201.568063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.66519 -39.89184 -38.86823 -38.06387 -36.39787 -35.35857 -34.81155 -33.08804 -31.28053 -30.47563 -28.98465 -28.11657 -27.68180 -25.31161 -24.00011 -23.22988 -22.32150 -21.68789 -20.47566 -20.15887 -18.69422 -18.34820 -17.98597 -17.11594 -16.85653 -16.48734 -16.22344 -15.63846 -15.36383 -15.09698 -14.90495 -14.49437 -14.45313 -14.34157 -14.17406 -13.80972 -13.53817 -13.41418 -13.13037 -12.83903 -12.41455 -12.35523 -12.18165 -11.80877 -11.60671 -11.33453 -11.01056 -10.94887 -10.72454 -10.60906 -10.58744 -10.48799 -10.19016 -10.12727 -9.92907 -9.89718 -9.73315 -9.53690 -9.40799 -8.98164 -8.48051 -6.68744 -5.81207 -3.23940 1.31680 1.73101 2.51849 2.62326 2.77479 3.25050 3.35850 3.43166 3.44120 3.62930 4.37857 4.46034 4.55664 4.59128 4.73664 4.89340 5.01673 5.10281 5.20663 5.25823 5.37591 5.41728 5.56545 5.67741 5.70908 5.85370 5.99816 6.12191 6.21539 6.24497 6.32641 6.36555 6.47674 6.56669 6.61318 6.66287 6.69598 6.76377 6.85850 6.96826 7.01103 7.38369 7.48265 7.65674 7.76740 7.77351 8.14537 8.42256 9.18492 9.82135 10.38899 11.26980 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002597 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.031277 B =10780.797727 C =11477.724466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.081 0.919 4 N -0.713 5.713 5 C 0.502 3.498 6 O -0.538 6.538 7 C 0.097 3.903 8 N -0.560 5.560 9 C 0.525 3.475 10 O -0.465 6.465 11 C 0.066 3.934 12 N -0.728 5.728 13 C 0.707 3.293 14 O -0.538 6.538 15 C -0.113 4.113 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.152 3.848 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.405 0.595 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.442 0.558 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.254 0.746 46 H 0.025 0.975 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 12.801 -19.906 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.099 0.901 4 N -0.366 5.366 5 C 0.286 3.714 6 O -0.415 6.415 7 C -0.028 4.028 8 N -0.306 5.306 9 C 0.312 3.688 10 O -0.334 6.334 11 C -0.062 4.062 12 N -0.394 5.394 13 C 0.408 3.592 14 O -0.411 6.411 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.384 4.384 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.025 3.975 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.241 0.759 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.286 0.714 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.282 13.158 -19.349 23.510 hybrid contribution 0.487 -0.992 -0.015 1.105 sum 2.769 12.167 -19.363 23.035 Atomic orbital electron populations 1.22253 0.95285 1.02803 1.01929 1.21049 0.94231 0.96675 0.83363 0.90075 1.46110 1.66509 1.14515 1.09437 1.20629 0.78223 0.87716 0.84825 1.90699 1.50103 1.15827 1.84834 1.21511 1.06034 0.91634 0.83620 1.45798 1.15660 1.40831 1.28345 1.20897 0.83273 0.79360 0.85251 1.90847 1.22917 1.63894 1.55731 1.22447 0.84391 1.01743 0.97577 1.45342 1.16156 1.44215 1.33647 1.15758 0.83307 0.80516 0.79638 1.91037 1.22570 1.53002 1.74501 1.21962 1.00805 0.98182 0.92430 0.90920 1.21433 1.00338 0.97454 0.94649 1.22178 1.00517 0.99708 0.95742 1.20787 0.96640 0.88027 0.90167 1.44014 1.65371 1.22451 0.99444 1.19171 1.18771 0.94507 1.05938 0.91730 1.25033 0.97098 0.97531 0.99886 1.70045 1.27948 1.38972 1.17522 0.86293 0.81165 0.81350 0.78046 1.21492 1.21800 1.20391 1.20961 0.96575 0.89892 0.90061 0.91553 0.91320 0.92917 0.75933 0.85507 0.85329 0.85742 0.85794 0.71385 0.93555 0.92148 0.92794 0.93218 0.96442 0.89629 0.93629 0.95711 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.79 37.16 0.33 -2.02 16 2 C 0.15 2.20 2.41 -67.93 -0.16 2.04 16 3 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 4 N -0.71 -9.33 5.00 -53.80 -0.27 -9.60 16 5 C 0.50 6.87 7.86 -10.98 -0.09 6.78 16 6 O -0.54 -9.21 16.09 5.56 0.09 -9.12 16 7 C 0.10 1.00 6.18 -5.20 -0.03 0.97 16 8 N -0.56 -5.95 2.09 -122.03 -0.26 -6.20 16 9 C 0.52 5.02 8.32 -10.55 -0.09 4.94 16 10 O -0.46 -5.83 17.76 5.60 0.10 -5.73 16 11 C 0.07 0.31 7.97 -4.32 -0.03 0.27 16 12 N -0.73 -4.51 6.58 -65.74 -0.43 -4.94 16 13 C 0.71 7.70 8.62 -88.02 -0.76 6.94 16 14 O -0.54 -7.84 17.48 5.34 0.09 -7.75 16 15 C -0.11 -1.84 2.33 -90.50 -0.21 -2.05 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.10 -1.65 4.77 -26.69 -0.13 -1.77 16 18 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 19 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 20 N -0.59 -14.18 2.99 -172.32 -0.52 -14.69 16 21 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 22 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 23 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 24 N -0.90 -25.74 11.22 55.49 0.62 -25.12 16 25 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 C 0.15 2.92 5.30 -3.71 -0.02 2.90 16 30 H 0.07 0.97 6.32 -51.93 -0.33 0.64 16 31 H 0.07 0.93 6.46 -51.93 -0.34 0.60 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.67 6.98 -40.82 -0.28 4.39 16 34 H 0.13 1.04 8.01 -51.93 -0.42 0.62 16 35 H 0.13 1.13 7.85 -51.93 -0.41 0.72 16 36 H 0.12 0.38 8.14 -51.92 -0.42 -0.05 16 37 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.44 1.57 8.96 -40.82 -0.37 1.20 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.98 6.50 -51.93 -0.34 0.64 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.03 0.50 6.18 -51.93 -0.32 0.17 16 47 H 0.05 0.86 6.52 -51.93 -0.34 0.52 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -36.22 377.32 -8.29 -44.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.77 Total: 3.46 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -1.61 Total: 13.23 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.85 Total: -60.56 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.28 Total: -22.59 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.22 -8.29 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566967112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.304 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds