Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46926 * 2 1 4 4 N 1.46495 * 109.47157 * 239.99816 * 2 1 3 5 5 C 1.34781 * 119.99990 * 85.00152 * 4 2 1 6 6 O 1.21283 * 120.00030 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00134 * 179.97438 * 5 4 2 8 8 N 1.46493 * 109.47315 * 179.97438 * 7 5 4 9 9 C 1.34776 * 124.17419 * 90.00164 * 8 7 5 10 10 O 1.21235 * 127.15770 * 359.93038 * 9 8 7 11 11 C 1.51581 * 105.68373 * 179.97438 * 9 8 7 12 12 N 1.47315 * 103.59289 * 0.02562 * 11 9 8 13 13 C 1.33794 * 124.18201 * 269.70277 * 8 7 5 14 14 O 1.21531 * 123.76861 * 0.04272 * 13 8 7 15 15 C 1.53001 * 109.46829 * 120.00005 * 2 1 3 16 16 H 1.09002 * 109.49432 * 179.97438 * 15 2 1 17 17 C 1.53041 * 109.49577 * 299.99776 * 15 2 1 18 18 C 1.53045 * 109.53426 * 181.34781 * 17 15 2 19 19 C 1.53188 * 109.31665 * 298.63498 * 18 17 15 20 20 N 1.46924 * 108.77313 * 54.63778 * 19 18 17 21 21 C 1.36939 * 120.63325 * 126.37112 * 20 19 18 22 22 H 1.08001 * 119.99743 * 208.01957 * 21 20 19 23 23 C 1.38804 * 119.99903 * 28.01480 * 21 20 19 24 24 N 1.31620 * 119.99909 * 17.53180 * 23 21 20 25 25 Si 1.86803 * 120.00190 * 197.52671 * 23 21 20 26 26 H 1.48502 * 109.46934 * 94.07065 * 25 23 21 27 27 H 1.48507 * 109.47089 * 214.07101 * 25 23 21 28 28 H 1.48503 * 109.47071 * 334.07096 * 25 23 21 29 29 C 1.46930 * 118.74093 * 306.39065 * 20 19 18 30 30 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47460 * 300.00333 * 1 2 3 32 32 H 1.09002 * 109.46997 * 60.00260 * 1 2 3 33 33 H 0.97000 * 120.00322 * 264.99867 * 4 2 1 34 34 H 1.08996 * 109.47092 * 300.00595 * 7 5 4 35 35 H 1.09004 * 109.46785 * 60.00097 * 7 5 4 36 36 H 1.09008 * 110.59870 * 118.52676 * 11 9 8 37 37 H 1.08995 * 110.60122 * 241.47141 * 11 9 8 38 38 H 0.97001 * 126.68574 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46241 * 301.37011 * 17 15 2 40 40 H 1.08997 * 109.45965 * 61.33417 * 17 15 2 41 41 H 1.09003 * 109.49417 * 58.59186 * 18 17 15 42 42 H 1.09010 * 109.49393 * 178.68094 * 18 17 15 43 43 H 1.09001 * 109.58773 * 294.85044 * 19 18 17 44 44 H 1.08994 * 109.70555 * 174.49159 * 19 18 17 45 45 H 0.97006 * 120.00194 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.58821 * 293.82534 * 29 20 19 47 47 H 1.08997 * 109.70880 * 173.46742 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6500 -0.7286 -3.5874 8 7 2.6986 0.2125 -4.7090 9 6 3.7708 0.9690 -5.0167 10 8 4.8361 0.9988 -4.4386 11 6 3.3673 1.7756 -6.2350 12 7 1.9847 1.3395 -6.4966 13 6 1.6862 0.4231 -5.5580 14 8 0.6150 -0.1465 -5.4866 15 6 2.0399 -0.7213 1.2493 16 1 3.1300 -0.7219 1.2495 17 6 1.5301 -0.0002 2.4992 18 6 2.0672 -0.7012 3.7492 19 6 1.5545 -2.1443 3.7806 20 7 1.9161 -2.8022 2.5177 21 6 2.6031 -3.9868 2.5197 22 1 3.2449 -4.2402 1.6888 23 6 2.4746 -4.8618 3.5895 24 7 1.4620 -4.7398 4.4214 25 14 3.7388 -6.2124 3.8486 26 1 4.7821 -5.7393 4.7936 27 1 3.0711 -7.4144 4.4096 28 1 4.3682 -6.5573 2.5485 29 6 1.5270 -2.1648 1.2523 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1526 34 1 3.6492 -1.1204 -3.3978 35 1 1.9777 -1.5509 -3.8325 36 1 3.3974 2.8429 -6.0155 37 1 4.0112 1.5390 -7.0820 38 1 1.4045 1.6492 -7.2095 39 1 1.8734 1.0342 2.4871 40 1 0.4404 -0.0209 2.5113 41 1 3.1570 -0.7026 3.7255 42 1 1.7229 -0.1732 4.6386 43 1 0.4706 -2.1447 3.8956 44 1 2.0105 -2.6783 4.6143 45 1 1.3720 -5.3515 5.1689 46 1 0.4408 -2.1667 1.1611 47 1 1.9648 -2.7099 0.4162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566967112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -82.396932 kcal Electronic energy + Delta-G solvation = -30210.930514 eV Core-core repulsion = 26008.166391 eV Total energy + Delta-G solvation = -4202.764123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.39355 -41.05600 -39.68774 -39.48914 -37.21377 -36.75907 -35.63073 -34.71420 -32.69772 -32.24753 -30.02281 -29.26092 -28.36902 -27.20104 -25.31102 -23.97769 -23.90110 -22.88025 -21.77865 -21.18026 -20.11112 -19.11944 -18.95290 -18.55209 -17.85659 -17.49935 -17.21888 -16.79490 -16.44005 -16.26742 -16.12738 -15.86174 -15.66512 -15.29837 -15.15379 -15.01365 -14.91967 -14.70062 -14.18236 -14.09264 -13.99011 -13.82650 -13.34778 -13.20752 -13.04971 -12.77363 -12.71525 -12.26409 -12.18545 -12.07840 -11.92846 -11.78161 -11.64039 -11.50443 -11.39259 -11.25368 -11.06570 -10.70363 -10.50983 -10.40863 -10.14884 -8.64454 -7.85216 -5.30125 0.60888 1.01859 1.46232 1.47590 1.49686 1.57896 1.80750 2.22620 2.32044 2.52319 3.03685 3.29473 3.53910 3.64482 3.74730 3.91793 3.98731 4.04728 4.14516 4.28723 4.31694 4.32330 4.33860 4.40524 4.46633 4.64429 4.66151 4.69734 4.84177 4.87715 4.95728 5.03358 5.13832 5.19629 5.28523 5.34720 5.45685 5.49071 5.58952 5.69188 5.79996 5.82060 5.97592 6.31567 6.40729 6.44312 7.05552 7.10171 7.16935 7.88789 8.40541 9.20964 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002597 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.031277 B =10780.797727 C =11477.724466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.077 0.923 4 N -0.710 5.710 5 C 0.500 3.500 6 O -0.574 6.574 7 C 0.096 3.904 8 N -0.568 5.568 9 C 0.516 3.484 10 O -0.501 6.501 11 C 0.077 3.923 12 N -0.707 5.707 13 C 0.699 3.301 14 O -0.585 6.585 15 C -0.097 4.097 16 H 0.067 0.933 17 C -0.098 4.098 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.071 0.929 23 C -0.051 4.051 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.265 1.265 29 C 0.151 3.849 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.413 0.587 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.455 0.545 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.068 0.932 43 H -0.004 1.004 44 H 0.049 0.951 45 H 0.248 0.752 46 H 0.021 0.979 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 14.161 -22.116 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.095 0.905 4 N -0.362 5.362 5 C 0.286 3.714 6 O -0.454 6.454 7 C -0.030 4.030 8 N -0.313 5.313 9 C 0.306 3.694 10 O -0.373 6.373 11 C -0.049 4.049 12 N -0.373 5.373 13 C 0.399 3.601 14 O -0.461 6.461 15 C -0.117 4.117 16 H 0.085 0.915 17 C -0.136 4.136 18 C -0.170 4.170 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.088 0.912 23 C -0.247 4.247 24 N -0.581 5.581 25 Si 0.792 3.208 26 H -0.216 1.216 27 H -0.225 1.225 28 H -0.189 1.189 29 C 0.025 3.975 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.250 0.750 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.302 0.698 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.014 0.986 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.039 0.961 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.488 14.552 -21.625 26.298 hybrid contribution 0.105 -1.374 0.632 1.517 sum 3.593 13.178 -20.993 25.045 Atomic orbital electron populations 1.22185 0.94971 1.02415 1.02004 1.20839 0.94291 0.96218 0.83073 0.90453 1.46059 1.66188 1.14844 1.09097 1.21188 0.77329 0.87358 0.85568 1.90672 1.51761 1.17476 1.85466 1.21609 1.07314 0.91684 0.82348 1.45971 1.16131 1.41022 1.28173 1.21712 0.82419 0.79123 0.86171 1.90828 1.24123 1.65029 1.57279 1.22725 0.83550 1.02029 0.96598 1.45326 1.17026 1.42374 1.32551 1.16000 0.82736 0.81029 0.80325 1.91001 1.24294 1.54994 1.75838 1.21733 1.00250 0.96231 0.93515 0.91476 1.21428 1.00550 0.98494 0.93132 1.22011 1.00067 0.96873 0.98048 1.20609 0.95063 0.90440 0.89083 1.44276 1.65499 1.22292 1.01085 1.19541 1.18494 0.95071 1.05795 0.91171 1.25763 0.98789 1.00008 1.00112 1.70197 1.29774 1.40057 1.18116 0.85310 0.78792 0.78502 0.78195 1.21642 1.22493 1.18934 1.21094 0.96468 0.91509 0.88397 0.92100 0.90497 0.93584 0.74997 0.83440 0.83984 0.83124 0.81533 0.69752 0.90873 0.91768 0.93260 0.91316 0.98614 0.93206 0.94263 0.96070 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 8.79 71.98 0.63 -3.69 16 2 C 0.16 4.46 2.41 44.99 0.11 4.56 16 3 H 0.08 2.28 7.58 -2.39 -0.02 2.26 16 4 N -0.71 -17.78 5.00 -442.53 -2.21 -19.99 16 5 C 0.50 13.27 7.86 87.66 0.69 13.96 16 6 O -0.57 -19.33 16.09 -3.04 -0.05 -19.38 16 7 C 0.10 1.87 6.18 85.63 0.53 2.40 16 8 N -0.57 -11.30 2.09 -777.23 -1.63 -12.92 16 9 C 0.52 8.88 8.32 87.94 0.73 9.61 16 10 O -0.50 -11.90 17.76 -2.89 -0.05 -11.96 16 11 C 0.08 0.44 7.97 85.76 0.68 1.12 16 12 N -0.71 -6.88 6.58 -480.31 -3.16 -10.04 16 13 C 0.70 14.31 8.62 179.44 1.55 15.86 16 14 O -0.58 -16.86 17.48 -3.81 -0.07 -16.93 16 15 C -0.10 -3.02 2.33 -10.72 -0.02 -3.04 16 16 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.10 -3.02 4.77 30.62 0.15 -2.87 16 18 C -0.13 -4.78 6.08 30.67 0.19 -4.60 16 19 C 0.17 8.25 5.31 86.36 0.46 8.71 16 20 N -0.61 -29.37 2.99 -699.11 -2.09 -31.46 16 21 C -0.26 -13.76 9.58 84.03 0.81 -12.96 16 22 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 23 C -0.05 -2.83 4.90 84.86 0.42 -2.41 16 24 N -0.94 -55.00 11.22 21.65 0.24 -54.76 16 25 Si 0.96 44.26 29.59 68.60 2.03 46.29 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 29 C 0.15 5.71 5.30 86.36 0.46 6.17 16 30 H 0.06 1.73 6.32 -2.39 -0.02 1.71 16 31 H 0.08 1.97 6.46 -2.39 -0.02 1.95 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.41 9.00 6.98 -92.71 -0.65 8.36 16 34 H 0.15 2.22 8.01 -2.39 -0.02 2.20 16 35 H 0.14 2.37 7.85 -2.38 -0.02 2.35 16 36 H 0.15 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.46 1.95 8.96 -92.71 -0.83 1.12 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 1.95 6.50 -2.39 -0.02 1.94 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.05 2.71 6.06 -2.39 -0.01 2.70 16 45 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 46 H 0.02 0.84 6.18 -2.39 -0.01 0.82 16 47 H 0.06 2.02 6.52 -2.39 -0.02 2.00 16 Total: -1.00 -81.17 377.32 -0.07 -81.25 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.45 Total: 17.07 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 7.37 Total: 32.83 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -8.85 Total: -129.18 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.17 Total: -48.27 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -81.17 -0.07 -81.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566967112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.151 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds