Wall clock time and date at job start Tue Mar 31 2020 22:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47447 * 180.02562 * 9 7 6 11 11 C 1.34775 * 120.00516 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99724 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00405 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99993 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46946 * 179.97438 * 14 13 11 16 16 C 1.34515 * 125.78780 * 89.99769 * 15 14 13 17 17 C 1.41383 * 106.84018 * 179.97438 * 16 15 14 18 18 C 1.34513 * 106.84209 * 0.02562 * 17 16 15 19 19 O 1.34299 * 125.79123 * 269.69276 * 15 14 13 20 20 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 34 34 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 35 35 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 36 36 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.46729 * 299.99757 * 9 7 6 38 38 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 39 39 H 0.97005 * 119.99633 * 359.97438 * 10 9 7 40 40 H 0.96997 * 119.99885 * 359.97438 * 13 11 10 41 41 H 1.08997 * 109.47115 * 299.99601 * 14 13 11 42 42 H 1.09001 * 109.46990 * 59.99630 * 14 13 11 43 43 H 1.08002 * 126.57968 * 0.04337 * 16 15 14 44 44 H 1.07996 * 126.58084 * 179.97438 * 17 16 15 45 45 H 1.08000 * 125.79615 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99792 * 94.99575 * 20 2 1 47 47 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1583 -0.7991 -2.0245 9 6 5.8763 -2.0485 -4.0067 10 7 7.3363 -1.9454 -4.0683 11 6 8.0092 -2.5093 -5.0908 12 8 7.4046 -3.1041 -5.9620 13 7 9.3525 -2.4149 -5.1472 14 6 10.0839 -3.0284 -6.2584 15 6 11.5603 -2.7797 -6.0862 16 6 12.4204 -3.5758 -5.4260 17 6 13.6928 -2.9659 -5.5136 18 6 13.5341 -1.8331 -6.2215 19 8 12.2415 -1.7285 -6.5706 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6062 -0.6633 3.5106 24 7 2.7268 -0.0080 4.6457 25 14 3.0504 -2.4758 3.4268 26 1 4.4848 -2.6179 3.0695 27 1 2.8044 -3.1073 4.7481 28 1 2.2151 -3.1430 2.3961 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4368 -1.3573 35 1 3.9994 -1.0730 -0.4258 36 1 3.4258 -1.7352 -3.1109 37 1 5.5881 -3.0989 -3.9636 38 1 5.4414 -1.5885 -4.8941 39 1 7.8187 -1.4705 -3.3735 40 1 9.8349 -1.9406 -4.4521 41 1 9.8948 -4.1018 -6.2692 42 1 9.7494 -2.5910 -7.1991 43 1 12.1844 -4.5036 -4.9261 44 1 14.6151 -3.3375 -5.0922 45 1 14.3147 -1.1298 -6.4714 46 1 2.2489 -1.6318 1.1527 47 1 3.0466 -0.4660 5.4386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567240115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:23 Heat of formation + Delta-G solvation = -66.830110 kcal Electronic energy + Delta-G solvation = -27660.396636 eV Core-core repulsion = 23458.307541 eV Total energy + Delta-G solvation = -4202.089095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56286 -41.40082 -40.48689 -38.30583 -36.31122 -35.97552 -35.45230 -34.20365 -33.94141 -31.89335 -31.45275 -30.15399 -28.40186 -26.46521 -25.51909 -23.84463 -22.73070 -22.13203 -21.90678 -21.58862 -21.33644 -20.04010 -19.59261 -18.61046 -17.69095 -17.49605 -17.25959 -17.12720 -16.91563 -16.48477 -16.35140 -15.86703 -15.69454 -15.36374 -15.24440 -15.04871 -14.72158 -14.44655 -14.36451 -14.15357 -13.79011 -13.73095 -13.62722 -13.55600 -13.48879 -12.97153 -12.91986 -12.61184 -12.25768 -12.18444 -12.05092 -11.77209 -11.65719 -11.58626 -11.08227 -10.96906 -10.91495 -10.54269 -10.17205 -9.93584 -9.57096 -9.28447 -8.00503 -5.32104 0.54557 1.35330 1.40122 1.43015 1.46110 1.48376 1.71969 1.99453 2.04656 2.27420 2.48844 3.24099 3.31639 3.59086 3.63738 3.64580 3.98552 4.08648 4.13203 4.18874 4.29505 4.33823 4.36572 4.38859 4.50180 4.66641 4.78056 4.84688 4.87120 4.98215 5.02587 5.09004 5.12264 5.17077 5.23534 5.28367 5.38105 5.39791 5.53925 5.60104 5.80053 5.81605 6.13854 6.24131 6.46887 6.87706 7.11406 7.15291 7.40852 7.88816 8.06077 9.21440 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.001730 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.928423 B =16180.307845 C =17318.835839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.119 4.119 5 C 0.127 3.873 6 N -0.706 5.706 7 C 0.504 3.496 8 O -0.580 6.580 9 C 0.127 3.873 10 N -0.732 5.732 11 C 0.711 3.289 12 O -0.623 6.623 13 N -0.735 5.735 14 C 0.227 3.773 15 C -0.055 4.055 16 C -0.186 4.186 17 C -0.232 4.232 18 C -0.028 4.028 19 O -0.189 6.189 20 N -0.750 5.750 21 C -0.221 4.221 22 H 0.056 0.944 23 C -0.069 4.069 24 N -0.987 5.987 25 Si 0.951 3.049 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.247 1.247 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.422 0.578 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.237 0.763 46 H 0.364 0.636 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.021 -7.773 -28.648 33.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.061 0.939 4 C -0.158 4.158 5 C 0.003 3.997 6 N -0.359 5.359 7 C 0.291 3.709 8 O -0.460 6.460 9 C 0.000 4.000 10 N -0.391 5.391 11 C 0.411 3.589 12 O -0.504 6.504 13 N -0.392 5.392 14 C 0.103 3.897 15 C -0.105 4.105 16 C -0.206 4.206 17 C -0.251 4.251 18 C -0.095 4.095 19 O -0.086 6.086 20 N -0.394 5.394 21 C -0.352 4.352 22 H 0.074 0.926 23 C -0.260 4.260 24 N -0.638 5.638 25 Si 0.779 3.221 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.171 1.171 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.260 0.740 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.248 0.752 40 H 0.244 0.756 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.179 0.821 44 H 0.186 0.814 45 H 0.253 0.747 46 H 0.197 0.803 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.834 -7.521 -28.960 33.852 hybrid contribution 0.724 -0.577 1.487 1.752 sum 16.558 -8.098 -27.473 33.083 Atomic orbital electron populations 1.22253 0.96852 1.01511 1.00885 1.20443 0.93233 0.95389 0.85038 0.93903 1.21967 0.92490 1.02595 0.98715 1.21207 0.95377 0.96580 0.86549 1.45757 1.07035 1.56202 1.26866 1.20929 0.82940 0.79972 0.87101 1.90730 1.56338 1.47795 1.51181 1.20950 0.80468 1.02661 0.95967 1.44742 1.07058 1.59923 1.27330 1.15763 0.81891 0.79458 0.81814 1.90920 1.68501 1.49556 1.41393 1.45058 1.04457 1.60634 1.29006 1.19368 0.81032 0.99489 0.89767 1.22250 0.94685 0.89628 1.03888 1.22019 0.93100 1.02470 1.02985 1.22231 0.99722 0.97475 1.05695 1.24887 0.83501 1.00921 1.00206 1.84043 1.21070 1.41969 1.61495 1.42851 1.80012 1.09430 1.07141 1.19035 1.34414 0.94295 0.87463 0.92581 1.25477 1.02865 1.02326 0.95312 1.69881 1.55238 1.37625 1.01033 0.85460 0.78254 0.81298 0.77060 1.21330 1.22567 1.17113 0.90395 0.92778 0.95417 0.89936 0.87211 0.92739 0.93905 0.74021 0.86878 0.86510 0.75212 0.75556 0.87756 0.90218 0.82125 0.81421 0.74692 0.80296 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 9.49 71.98 0.68 -3.96 16 2 C 0.17 5.59 2.89 44.99 0.13 5.72 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 C -0.12 -2.72 4.87 30.59 0.15 -2.57 16 5 C 0.13 3.43 5.56 86.38 0.48 3.91 16 6 N -0.71 -13.64 5.56 -463.06 -2.57 -16.21 16 7 C 0.50 11.49 7.90 87.66 0.69 12.18 16 8 O -0.58 -18.80 15.67 -3.03 -0.05 -18.84 16 9 C 0.13 2.14 6.15 85.64 0.53 2.67 16 10 N -0.73 -13.95 5.53 -482.29 -2.67 -16.61 16 11 C 0.71 14.68 8.57 179.06 1.53 16.21 16 12 O -0.62 -16.56 16.34 -3.99 -0.07 -16.63 16 13 N -0.73 -11.52 5.55 -482.31 -2.68 -14.19 16 14 C 0.23 3.25 6.20 85.63 0.53 3.78 16 15 C -0.05 -0.78 6.69 24.83 0.17 -0.61 16 16 C -0.19 -2.35 10.81 22.19 0.24 -2.11 16 17 C -0.23 -2.48 10.91 22.19 0.24 -2.24 16 18 C -0.03 -0.27 12.09 66.97 0.81 0.53 16 19 O -0.19 -2.86 10.65 -2.49 -0.03 -2.89 16 20 N -0.75 -33.19 4.38 -322.93 -1.41 -34.60 16 21 C -0.22 -12.44 10.41 84.04 0.87 -11.56 16 22 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 24 N -0.99 -64.13 13.97 21.65 0.30 -63.83 16 25 Si 0.95 46.10 27.74 68.60 1.90 48.00 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.25 -10.54 6.51 99.48 0.65 -9.89 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 36 H 0.42 4.62 8.47 -92.71 -0.79 3.84 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.41 7.93 7.45 -92.70 -0.69 7.24 16 40 H 0.41 5.27 8.48 -92.71 -0.79 4.48 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.24 0.46 8.06 -2.91 -0.02 0.44 16 46 H 0.36 15.52 5.66 -92.71 -0.52 15.00 16 47 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -82.84 402.01 -1.56 -84.41 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -1.82 Total: 33.08 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.53 Total: 18.32 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -9.03 Total: -145.44 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.14 Total: -38.36 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -82.84 -1.56 -84.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567240115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.575 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds