Wall clock time and date at job start Tue Mar 31 2020 21:58:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 110.88794 * 2 1
4 4 C 1.55131 * 110.90101 * 124.08940 * 2 1 3
5 5 N 1.47433 * 104.71959 * 155.27853 * 4 2 1
6 6 C 1.34777 * 125.64954 * 155.82019 * 5 4 2
7 7 O 1.21276 * 119.99915 * 179.69288 * 6 5 4
8 8 C 1.50697 * 119.99808 * 359.68499 * 6 5 4
9 9 N 1.46505 * 109.47331 * 180.02562 * 8 6 5
10 10 C 1.46412 * 119.53354 * 89.99610 * 9 8 6
11 11 C 1.53039 * 109.51232 * 144.17065 * 10 9 8
12 12 C 1.50812 * 109.18705 * 46.70074 * 11 10 9
13 13 O 1.21233 * 120.01674 * 145.76301 * 12 11 10
14 14 N 1.34560 * 119.96008 * 326.04103 * 12 11 10
15 15 C 1.34289 * 119.53233 * 270.03043 * 9 8 6
16 16 O 1.21533 * 119.21471 * 5.67796 * 15 9 8
17 17 C 1.47024 * 108.70140 * 335.54911 * 5 4 2
18 18 C 1.54328 * 107.26968 * 1.29062 * 17 5 4
19 19 H 1.08994 * 110.71941 * 263.64815 * 18 17 5
20 20 C 1.53003 * 110.71596 * 140.55481 * 18 17 5
21 21 N 1.46500 * 109.47241 * 66.45213 * 20 18 17
22 22 C 1.36934 * 119.99751 * 179.97438 * 21 20 18
23 23 H 1.07994 * 120.00520 * 0.02562 * 22 21 20
24 24 C 1.38812 * 119.99581 * 179.97438 * 22 21 20
25 25 N 1.31622 * 120.00269 * 0.02562 * 24 22 21
26 26 Si 1.86800 * 119.99968 * 180.02562 * 24 22 21
27 27 H 1.48505 * 109.47125 * 0.02562 * 26 24 22
28 28 H 1.48497 * 109.47285 * 120.00239 * 26 24 22
29 29 H 1.48499 * 109.47521 * 240.00227 * 26 24 22
30 30 H 1.08997 * 109.47487 * 183.88234 * 1 2 3
31 31 H 1.09001 * 109.47185 * 303.89294 * 1 2 3
32 32 H 1.09000 * 109.46601 * 63.88292 * 1 2 3
33 33 H 1.08993 * 110.49980 * 36.43192 * 4 2 1
34 34 H 1.09006 * 110.34163 * 274.03423 * 4 2 1
35 35 H 1.09001 * 109.47402 * 60.00246 * 8 6 5
36 36 H 1.08997 * 109.47485 * 300.00243 * 8 6 5
37 37 H 1.09000 * 109.46150 * 24.16355 * 10 9 8
38 38 H 1.09001 * 109.46361 * 264.18492 * 10 9 8
39 39 H 1.08997 * 109.52208 * 286.78375 * 11 10 9
40 40 H 1.09007 * 109.51611 * 166.61049 * 11 10 9
41 41 H 0.97006 * 119.50035 * 184.16152 * 14 12 11
42 42 H 1.09006 * 109.87773 * 120.70455 * 17 5 4
43 43 H 1.08995 * 109.88263 * 241.71883 * 17 5 4
44 44 H 1.09000 * 109.47020 * 186.45180 * 20 18 17
45 45 H 1.08999 * 109.47460 * 306.45197 * 20 18 17
46 46 H 0.96994 * 120.00069 * 0.02562 * 21 20 18
47 47 H 0.97001 * 119.99748 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9187 1.0184 0.0000
4 6 2.0835 -0.8123 1.2002
5 7 3.4271 -1.2433 0.7731
6 6 4.4476 -1.5621 1.5937
7 8 5.5126 -1.9106 1.1299
8 6 4.2653 -1.4854 3.0877
9 7 5.5104 -1.8778 3.7525
10 6 6.5139 -0.8585 4.0652
11 6 7.1904 -1.1984 5.3952
12 6 7.5698 -2.6580 5.3996
13 8 8.5782 -3.0208 5.9664
14 7 6.7915 -3.5565 4.7692
15 6 5.7156 -3.1675 4.0657
16 8 4.9115 -4.0020 3.6996
17 6 3.4675 -1.2740 -0.6963
18 6 2.0861 -0.8076 -1.2024
19 1 1.4479 -1.6628 -1.4243
20 6 2.2351 0.0883 -2.4337
21 7 2.7617 -0.7002 -3.5505
22 6 2.9790 -0.1066 -4.7652
23 1 2.7627 0.9428 -4.8999
24 6 3.4785 -0.8536 -5.8232
25 7 3.7427 -2.1326 -5.6590
26 14 3.7757 -0.0438 -7.4801
27 1 3.4019 1.3914 -7.4038
28 1 5.2118 -0.1624 -7.8386
29 1 2.9501 -0.7164 -8.5151
30 1 -0.3634 -1.0253 0.0696
31 1 -0.3633 0.5731 0.8530
32 1 -0.3632 0.4524 -0.9228
33 1 1.4523 -1.6785 1.3984
34 1 2.1515 -0.1807 2.0860
35 1 3.4634 -2.1586 3.3909
36 1 4.0090 -0.4645 3.3705
37 1 6.0305 0.1154 4.1421
38 1 7.2625 -0.8309 3.2735
39 1 6.5014 -0.9988 6.2158
40 1 8.0863 -0.5889 5.5143
41 1 7.0082 -4.5003 4.8271
42 1 4.2427 -0.5994 -1.0599
43 1 3.6677 -2.2886 -1.0405
44 1 1.2620 0.4977 -2.7050
45 1 2.9225 0.9038 -2.2088
46 1 2.9557 -1.6428 -3.4297
47 1 4.0921 -2.6544 -6.3983
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001569851161.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:58:28
Heat of formation + Delta-G solvation = -75.895561 kcal
Electronic energy + Delta-G solvation = -29674.604034 eV
Core-core repulsion = 25472.121832 eV
Total energy + Delta-G solvation = -4202.482202 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.02477 -40.17751 -39.22835 -37.94012 -36.49117 -34.96707 -34.69376 -32.96542
-31.98589 -31.41477 -29.53580 -27.96808 -26.40146 -25.48918 -25.24018 -23.48951
-22.99518 -21.22979 -20.30581 -19.75476 -19.05014 -18.67012 -18.09090 -17.48543
-17.06572 -16.69068 -16.39172 -15.79114 -15.23034 -15.17090 -14.96654 -14.79380
-14.66157 -14.25507 -14.05916 -13.71674 -13.64775 -13.31549 -13.18988 -12.93944
-12.84153 -12.54405 -12.35627 -12.18478 -12.00192 -11.91912 -11.42662 -11.11197
-11.07089 -10.89460 -10.65891 -10.63472 -10.56256 -10.45923 -10.40763 -10.23473
-9.98566 -9.67837 -9.19061 -8.88778 -8.58099 -6.93325 -5.76154 -3.05667
1.35360 1.86415 2.54981 2.63453 2.83136 3.05519 3.43696 3.48734
3.51525 3.88012 4.03584 4.28005 4.39977 4.43234 4.48032 4.57781
4.73110 4.80537 4.85256 4.90879 4.97808 5.23902 5.25795 5.30201
5.45892 5.46616 5.53927 5.58288 5.68275 5.70609 5.77198 5.96744
6.01658 6.04689 6.12815 6.18106 6.32236 6.36911 6.40556 6.67563
6.81113 6.95351 7.11506 7.51694 7.69920 7.78144 8.14191 8.41954
9.53327 10.10150 10.44229 11.46532
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.014996 B = 0.002387 C = 0.002181
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1866.686491 B =11724.950878 C =12837.317339
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.098 4.098
3 H 0.087 0.913
4 C 0.101 3.899
5 N -0.616 5.616
6 C 0.508 3.492
7 O -0.528 6.528
8 C 0.116 3.884
9 N -0.600 5.600
10 C 0.109 3.891
11 C -0.156 4.156
12 C 0.524 3.476
13 O -0.504 6.504
14 N -0.674 5.674
15 C 0.715 3.285
16 O -0.549 6.549
17 C 0.118 3.882
18 C -0.100 4.100
19 H 0.086 0.914
20 C 0.165 3.835
21 N -0.733 5.733
22 C -0.241 4.241
23 H 0.071 0.929
24 C -0.013 4.013
25 N -0.931 5.931
26 Si 0.907 3.093
27 H -0.280 1.280
28 H -0.292 1.292
29 H -0.291 1.291
30 H 0.057 0.943
31 H 0.055 0.945
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.073 0.927
35 H 0.118 0.882
36 H 0.114 0.886
37 H 0.104 0.896
38 H 0.084 0.916
39 H 0.115 0.885
40 H 0.128 0.872
41 H 0.427 0.573
42 H 0.076 0.924
43 H 0.070 0.930
44 H 0.024 0.976
45 H 0.020 0.980
46 H 0.384 0.616
47 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.946 5.962 26.841 27.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.117 4.117
3 H 0.106 0.894
4 C -0.023 4.023
5 N -0.351 5.351
6 C 0.294 3.706
7 O -0.403 6.403
8 C -0.010 4.010
9 N -0.337 5.337
10 C -0.014 4.014
11 C -0.197 4.197
12 C 0.312 3.688
13 O -0.376 6.376
14 N -0.343 5.343
15 C 0.417 3.583
16 O -0.422 6.422
17 C -0.004 4.004
18 C -0.120 4.120
19 H 0.104 0.896
20 C 0.037 3.963
21 N -0.377 5.377
22 C -0.372 4.372
23 H 0.089 0.911
24 C -0.209 4.209
25 N -0.579 5.579
26 Si 0.738 3.262
27 H -0.206 1.206
28 H -0.219 1.219
29 H -0.219 1.219
30 H 0.077 0.923
31 H 0.074 0.926
32 H 0.084 0.916
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.136 0.864
36 H 0.132 0.868
37 H 0.122 0.878
38 H 0.102 0.898
39 H 0.133 0.867
40 H 0.146 0.854
41 H 0.268 0.732
42 H 0.094 0.906
43 H 0.088 0.912
44 H 0.042 0.958
45 H 0.038 0.962
46 H 0.218 0.782
47 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -1.205 5.434 26.613 27.189
hybrid contribution 0.365 -0.346 -1.035 1.151
sum -0.840 5.089 25.578 26.093
Atomic orbital electron populations
1.21701 0.93654 1.02155 1.02250 1.22396 0.96242 0.99399 0.93711
0.89446 1.22539 0.83478 0.98381 0.97856 1.48563 1.11944 1.66745
1.07827 1.20635 0.83448 0.77825 0.88728 1.90746 1.26018 1.46427
1.77156 1.21316 0.86555 1.03339 0.89823 1.46541 1.20521 1.05807
1.60799 1.21715 0.91792 0.92132 0.95772 1.22272 1.04867 0.92422
1.00104 1.20974 0.82143 0.89038 0.76637 1.90802 1.23767 1.81293
1.41778 1.44229 1.27476 1.13173 1.49390 1.15490 0.81439 0.83031
0.78365 1.91025 1.44382 1.50205 1.56603 1.22048 0.98364 1.02474
0.77537 1.22527 0.95063 0.99264 0.95116 0.89563 1.20628 0.96640
0.92873 0.86126 1.42372 1.77850 1.09951 1.07572 1.19238 1.35971
0.94126 0.87873 0.91135 1.24758 1.02045 0.95820 0.98320 1.69672
1.50664 1.06087 1.31519 0.86126 0.77505 0.78285 0.84307 1.20571
1.21867 1.21863 0.92348 0.92627 0.91582 0.90943 0.90848 0.86422
0.86810 0.87779 0.89810 0.86697 0.85403 0.73164 0.90603 0.91205
0.95815 0.96216 0.78216 0.93507
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.21 9.31 37.16 0.35 -0.87 16
2 C -0.10 -1.01 3.10 -88.35 -0.27 -1.28 16
3 H 0.09 0.88 8.05 -51.93 -0.42 0.47 16
4 C 0.10 0.90 6.16 -2.40 -0.01 0.88 16
5 N -0.62 -7.99 3.33 -170.37 -0.57 -8.56 16
6 C 0.51 6.89 7.91 -10.99 -0.09 6.80 16
7 O -0.53 -9.70 16.76 5.56 0.09 -9.61 16
8 C 0.12 0.98 4.82 -5.19 -0.03 0.96 16
9 N -0.60 -5.36 2.28 -181.16 -0.41 -5.77 16
10 C 0.11 0.59 6.64 -4.07 -0.03 0.57 16
11 C -0.16 -0.68 6.28 -27.81 -0.17 -0.85 16
12 C 0.52 4.49 7.76 -11.03 -0.09 4.41 16
13 O -0.50 -5.93 17.93 5.60 0.10 -5.83 16
14 N -0.67 -6.37 5.18 -16.03 -0.08 -6.46 16
15 C 0.72 8.15 8.21 -87.78 -0.72 7.43 16
16 O -0.55 -8.27 16.66 5.34 0.09 -8.18 16
17 C 0.12 1.92 6.15 -3.06 -0.02 1.90 16
18 C -0.10 -1.48 2.48 -88.78 -0.22 -1.70 16
19 H 0.09 1.32 8.04 -51.93 -0.42 0.91 16
20 C 0.17 3.12 5.58 -4.04 -0.02 3.09 16
21 N -0.73 -18.22 5.45 -59.91 -0.33 -18.55 16
22 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16
23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16
25 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16
26 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16
27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
30 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16
31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.07 0.61 7.99 -51.93 -0.41 0.19 16
34 H 0.07 0.41 7.48 -51.93 -0.39 0.03 16
35 H 0.12 0.96 7.44 -51.93 -0.39 0.58 16
36 H 0.11 0.47 7.53 -51.93 -0.39 0.08 16
37 H 0.10 0.24 7.79 -51.93 -0.40 -0.16 16
38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
39 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16
40 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16
41 H 0.43 3.75 8.86 -40.82 -0.36 3.39 16
42 H 0.08 1.42 7.77 -51.93 -0.40 1.01 16
43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
45 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16
46 H 0.38 10.16 7.52 -40.82 -0.31 9.86 16
47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16
LS Contribution 389.14 15.07 5.86 5.86
Total: -1.00 -38.95 389.14 -8.35 -47.30
By element:
Atomic # 1 Polarization: 13.26 SS G_CDS: -7.24 Total: 6.02 kcal
Atomic # 6 Polarization: 15.59 SS G_CDS: -1.57 Total: 14.02 kcal
Atomic # 7 Polarization: -66.40 SS G_CDS: -0.66 Total: -67.06 kcal
Atomic # 8 Polarization: -23.90 SS G_CDS: 0.28 Total: -23.62 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -38.95 -8.35 -47.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569851161.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.593 kcal
(2) G-P(sol) polarization free energy of solvation -38.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.302 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds