Wall clock time and date at job start Tue Mar 31 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 110.88137 * 2 1 4 4 C 1.55124 * 110.91112 * 124.09848 * 2 1 3 5 5 N 1.47426 * 104.72417 * 155.27889 * 4 2 1 6 6 C 1.34770 * 125.64646 * 155.82056 * 5 4 2 7 7 O 1.21290 * 119.99910 * 184.98149 * 6 5 4 8 8 C 1.50704 * 120.00348 * 4.97649 * 6 5 4 9 9 C 1.50697 * 115.56127 * 269.77779 * 8 6 5 10 10 N 1.34774 * 120.00402 * 330.48053 * 9 8 6 11 11 O 1.21284 * 119.99385 * 150.47206 * 9 8 6 12 12 C 1.53001 * 117.49481 * 55.46997 * 8 6 5 13 13 C 1.53001 * 117.49470 * 124.09344 * 8 6 5 14 14 C 1.47022 * 108.70028 * 335.55041 * 5 4 2 15 15 C 1.54330 * 107.27250 * 1.29102 * 14 5 4 16 16 H 1.09005 * 110.71676 * 263.82898 * 15 14 5 17 17 N 1.46894 * 110.71772 * 140.55420 * 15 14 5 18 18 C 1.46900 * 111.00053 * 86.45561 * 17 15 14 19 19 C 1.50703 * 109.47395 * 179.97438 * 18 17 15 20 20 O 1.21292 * 119.99914 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99999 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99752 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00135 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99864 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00252 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99759 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47022 * 60.00951 * 26 24 22 28 28 H 1.48501 * 109.46999 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47656 * 300.00170 * 26 24 22 30 30 H 1.09007 * 109.46874 * 183.87790 * 1 2 3 31 31 H 1.09000 * 109.47062 * 303.87614 * 1 2 3 32 32 H 1.08999 * 109.47339 * 63.88245 * 1 2 3 33 33 H 1.08996 * 110.49395 * 36.43054 * 4 2 1 34 34 H 1.09008 * 110.33920 * 274.04389 * 4 2 1 35 35 H 0.96999 * 119.99929 * 354.94221 * 10 9 8 36 36 H 0.97001 * 119.99883 * 174.94220 * 10 9 8 37 37 H 1.08992 * 117.50180 * 0.02562 * 12 8 6 38 38 H 1.09001 * 117.49758 * 214.97668 * 12 8 6 39 39 H 1.09002 * 117.49608 * 145.02821 * 13 8 6 40 40 H 1.08993 * 117.50170 * 359.97438 * 13 8 6 41 41 H 1.09000 * 109.87764 * 120.70468 * 14 5 4 42 42 H 1.08993 * 109.88210 * 241.71792 * 14 5 4 43 43 H 1.00906 * 110.99987 * 210.40223 * 17 15 14 44 44 H 1.08999 * 109.47197 * 299.99910 * 18 17 15 45 45 H 1.09004 * 109.47300 * 59.99521 * 18 17 15 46 46 H 0.96997 * 120.00340 * 0.02562 * 21 19 18 47 47 H 0.96996 * 120.00603 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0837 -0.8124 1.1999 5 7 3.4273 -1.2432 0.7727 6 6 4.4477 -1.5621 1.5932 7 8 5.5400 -1.8174 1.1317 8 6 4.2319 -1.6012 3.0842 9 6 4.4864 -0.3066 3.8123 10 7 5.3933 0.5684 3.3344 11 8 3.8749 -0.0520 4.8283 12 6 3.1127 -2.5008 3.6125 13 6 4.5756 -2.9014 3.8138 14 6 3.4675 -1.2737 -0.6967 15 6 2.0861 -0.8073 -1.2026 16 1 1.4468 -1.6626 -1.4217 17 7 2.2290 0.0530 -2.3847 18 6 2.2896 -0.7480 -3.6146 19 6 2.4352 0.1668 -4.8033 20 8 2.4842 1.3679 -4.6418 21 7 2.5120 -0.3498 -6.0457 22 6 2.6450 0.4824 -7.1271 23 1 2.6886 1.5519 -6.9833 24 6 2.7247 -0.0502 -8.4080 25 7 2.6721 -1.3515 -8.5830 26 14 2.9052 1.0838 -9.8814 27 1 4.1526 1.8780 -9.7449 28 1 2.9670 0.2740 -11.1246 29 1 1.7390 2.0009 -9.9462 30 1 -0.3633 -1.0254 0.0695 31 1 -0.3633 0.5728 0.8532 32 1 -0.3634 0.4524 -0.9227 33 1 1.4525 -1.6787 1.3980 34 1 2.1516 -0.1809 2.0859 35 1 5.9345 0.3339 2.5644 36 1 5.5048 1.4326 3.7606 37 1 2.5328 -3.0645 2.8818 38 1 2.5604 -2.1561 4.4868 39 1 4.9856 -2.8204 4.8205 40 1 4.9574 -3.7285 3.2154 41 1 4.2426 -0.5990 -1.0603 42 1 3.6678 -2.2882 -1.0410 43 1 1.4828 0.7307 -2.4310 44 1 3.1449 -1.4220 -3.5675 45 1 1.3734 -1.3302 -3.7146 46 1 2.4731 -1.3104 -6.1749 47 1 2.7273 -1.7233 -9.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570351386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:19 Heat of formation + Delta-G solvation = -77.857894 kcal Electronic energy + Delta-G solvation = -29499.568157 eV Core-core repulsion = 25297.000862 eV Total energy + Delta-G solvation = -4202.567295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19789 -39.69008 -38.53203 -37.90100 -36.35484 -34.82006 -34.00283 -33.84170 -32.63881 -31.24480 -29.30791 -26.94578 -26.58949 -25.54315 -24.19925 -22.99826 -22.58208 -21.32873 -20.42061 -19.49836 -19.19976 -18.15967 -17.88525 -17.57566 -17.03629 -16.36859 -15.98287 -15.55839 -15.28183 -15.04913 -14.83447 -14.64059 -14.56594 -14.39463 -13.89245 -13.76000 -13.70461 -13.41964 -13.14449 -13.02058 -12.65117 -12.25907 -12.23088 -12.03793 -11.65320 -11.59863 -11.57533 -11.37602 -11.24527 -11.09111 -11.02946 -10.73649 -10.56178 -10.46152 -10.23792 -10.09790 -10.03474 -9.52794 -8.93870 -8.54505 -8.20559 -7.99461 -6.44223 -3.85279 1.93817 2.16267 2.46580 2.99106 3.18393 3.24461 3.28645 3.34429 3.86284 3.90388 3.99858 4.13867 4.22532 4.25480 4.30184 4.39906 4.47187 4.73968 5.00752 5.01338 5.09800 5.11304 5.15425 5.17653 5.20831 5.25087 5.35521 5.48023 5.53848 5.60388 5.61058 5.73312 5.83028 5.85466 5.90056 5.96047 6.03774 6.23254 6.35154 6.88201 7.08654 7.13720 7.51832 7.52689 7.74344 7.80697 8.02928 8.57834 9.14901 9.50897 10.01952 10.73343 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002111 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.923020 B =13260.376668 C =13540.529003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.098 0.902 4 C 0.106 3.894 5 N -0.606 5.606 6 C 0.564 3.436 7 O -0.526 6.526 8 C -0.199 4.199 9 C 0.568 3.432 10 N -0.845 5.845 11 O -0.537 6.537 12 C -0.132 4.132 13 C -0.117 4.117 14 C 0.113 3.887 15 C 0.079 3.921 16 H 0.062 0.938 17 N -0.656 5.656 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.408 0.592 36 H 0.406 0.594 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.355 0.645 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -4.586 23.835 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.116 0.884 4 C -0.018 4.018 5 N -0.339 5.339 6 C 0.351 3.649 7 O -0.403 6.403 8 C -0.205 4.205 9 C 0.352 3.648 10 N -0.409 5.409 11 O -0.414 6.414 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.010 4.010 15 C -0.032 4.032 16 H 0.080 0.920 17 N -0.290 5.290 18 C -0.084 4.084 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.238 0.762 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.177 0.823 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.226 0.774 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.932 -3.985 24.208 24.552 hybrid contribution -0.457 -0.116 -1.335 1.416 sum -1.389 -4.101 22.873 23.279 Atomic orbital electron populations 1.21747 0.93353 1.02315 1.02790 1.22586 0.96356 1.00365 0.93262 0.88351 1.22512 0.82896 0.98436 0.97920 1.48333 1.12251 1.66003 1.07302 1.18809 0.83274 0.77172 0.85679 1.90765 1.23672 1.49034 1.76780 1.21447 1.12109 0.94000 0.92986 1.18884 0.78885 0.83380 0.83671 1.43790 1.41045 1.19787 1.36258 1.90760 1.49723 1.76629 1.24255 1.23183 0.91507 0.98758 1.03479 1.23064 0.98300 0.93018 1.01145 1.22103 0.98945 1.01908 0.78032 1.22582 0.94441 0.95306 0.90862 0.91985 1.60008 1.53235 1.15895 0.99837 1.21760 1.01180 0.95592 0.89854 1.19749 0.84759 0.89046 0.83905 1.90527 1.55713 1.15296 1.85246 1.41855 1.63650 1.09708 1.04655 1.19650 1.47160 0.92169 0.84011 0.87957 1.25268 0.97267 0.96302 0.99061 1.69598 1.50258 1.10559 1.23842 0.85913 0.79129 0.79419 0.79736 1.19851 1.20967 1.19908 0.92242 0.91870 0.91653 0.90725 0.90407 0.76206 0.76227 0.87287 0.86267 0.87038 0.86975 0.89376 0.91336 0.82342 0.89525 0.93614 0.77446 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.31 37.16 0.35 -0.70 16 2 C -0.11 -0.94 3.09 -88.35 -0.27 -1.21 16 3 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 4 C 0.11 0.85 5.24 -2.41 -0.01 0.84 16 5 N -0.61 -6.29 3.32 -170.38 -0.57 -6.86 16 6 C 0.56 6.38 6.12 -10.99 -0.07 6.31 16 7 O -0.53 -7.64 17.21 5.55 0.10 -7.54 16 8 C -0.20 -1.83 1.62 -156.81 -0.25 -2.09 16 9 C 0.57 5.81 7.69 -10.99 -0.08 5.72 16 10 N -0.85 -6.93 8.74 31.22 0.27 -6.66 16 11 O -0.54 -6.84 17.11 5.55 0.10 -6.74 16 12 C -0.13 -0.92 8.76 -26.73 -0.23 -1.15 16 13 C -0.12 -0.87 9.94 -26.73 -0.27 -1.13 16 14 C 0.11 1.34 6.56 -3.06 -0.02 1.32 16 15 C 0.08 0.86 2.70 -65.88 -0.18 0.68 16 16 H 0.06 0.62 7.80 -51.93 -0.41 0.22 16 17 N -0.66 -9.60 5.92 -106.05 -0.63 -10.22 16 18 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 19 C 0.44 10.06 7.82 -10.99 -0.09 9.98 16 20 O -0.58 -15.43 15.78 5.55 0.09 -15.35 16 21 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 26 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.06 0.38 8.07 -51.92 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.48 7.63 -51.93 -0.40 0.09 16 34 H 0.08 0.63 7.79 -51.92 -0.40 0.22 16 35 H 0.41 3.35 7.88 -40.82 -0.32 3.03 16 36 H 0.41 2.63 8.93 -40.82 -0.36 2.26 16 37 H 0.11 0.63 7.72 -51.93 -0.40 0.23 16 38 H 0.12 0.83 7.68 -51.93 -0.40 0.43 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.26 8.03 -51.93 -0.42 0.85 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.36 5.32 8.20 -39.29 -0.32 5.00 16 44 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 45 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -34.06 395.47 -7.50 -41.56 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.06 Total: 16.15 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.40 Total: 11.44 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.25 Total: -61.34 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: 0.28 Total: -29.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.06 -7.50 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570351386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.294 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds