Wall clock time and date at job start Tue Mar 31 2020 22:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 110.88137 * 2 1 4 4 C 1.55124 * 110.91112 * 124.09848 * 2 1 3 5 5 N 1.47426 * 104.72417 * 155.27889 * 4 2 1 6 6 C 1.34770 * 125.64646 * 155.82056 * 5 4 2 7 7 O 1.21290 * 119.99910 * 184.98149 * 6 5 4 8 8 C 1.50704 * 120.00348 * 4.97649 * 6 5 4 9 9 C 1.50697 * 115.56127 * 269.77779 * 8 6 5 10 10 N 1.34774 * 120.00402 * 330.48053 * 9 8 6 11 11 O 1.21284 * 119.99385 * 150.47206 * 9 8 6 12 12 C 1.53001 * 117.49481 * 55.46997 * 8 6 5 13 13 C 1.53001 * 117.49470 * 124.09344 * 8 6 5 14 14 C 1.47022 * 108.70028 * 335.55041 * 5 4 2 15 15 C 1.54330 * 107.27250 * 1.29102 * 14 5 4 16 16 H 1.09005 * 110.71676 * 263.82898 * 15 14 5 17 17 N 1.46894 * 110.71772 * 140.55420 * 15 14 5 18 18 C 1.46900 * 111.00053 * 86.45561 * 17 15 14 19 19 C 1.50703 * 109.47395 * 179.97438 * 18 17 15 20 20 O 1.21292 * 119.99914 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99999 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99752 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00135 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99864 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00252 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99759 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47022 * 60.00951 * 26 24 22 28 28 H 1.48501 * 109.46999 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47656 * 300.00170 * 26 24 22 30 30 H 1.09007 * 109.46874 * 183.87790 * 1 2 3 31 31 H 1.09000 * 109.47062 * 303.87614 * 1 2 3 32 32 H 1.08999 * 109.47339 * 63.88245 * 1 2 3 33 33 H 1.08996 * 110.49395 * 36.43054 * 4 2 1 34 34 H 1.09008 * 110.33920 * 274.04389 * 4 2 1 35 35 H 0.96999 * 119.99929 * 354.94221 * 10 9 8 36 36 H 0.97001 * 119.99883 * 174.94220 * 10 9 8 37 37 H 1.08992 * 117.50180 * 0.02562 * 12 8 6 38 38 H 1.09001 * 117.49758 * 214.97668 * 12 8 6 39 39 H 1.09002 * 117.49608 * 145.02821 * 13 8 6 40 40 H 1.08993 * 117.50170 * 359.97438 * 13 8 6 41 41 H 1.09000 * 109.87764 * 120.70468 * 14 5 4 42 42 H 1.08993 * 109.88210 * 241.71792 * 14 5 4 43 43 H 1.00906 * 110.99987 * 210.40223 * 17 15 14 44 44 H 1.08999 * 109.47197 * 299.99910 * 18 17 15 45 45 H 1.09004 * 109.47300 * 59.99521 * 18 17 15 46 46 H 0.96997 * 120.00340 * 0.02562 * 21 19 18 47 47 H 0.96996 * 120.00603 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0837 -0.8124 1.1999 5 7 3.4273 -1.2432 0.7727 6 6 4.4477 -1.5621 1.5932 7 8 5.5400 -1.8174 1.1317 8 6 4.2319 -1.6012 3.0842 9 6 4.4864 -0.3066 3.8123 10 7 5.3933 0.5684 3.3344 11 8 3.8749 -0.0520 4.8283 12 6 3.1127 -2.5008 3.6125 13 6 4.5756 -2.9014 3.8138 14 6 3.4675 -1.2737 -0.6967 15 6 2.0861 -0.8073 -1.2026 16 1 1.4468 -1.6626 -1.4217 17 7 2.2290 0.0530 -2.3847 18 6 2.2896 -0.7480 -3.6146 19 6 2.4352 0.1668 -4.8033 20 8 2.4842 1.3679 -4.6418 21 7 2.5120 -0.3498 -6.0457 22 6 2.6450 0.4824 -7.1271 23 1 2.6886 1.5519 -6.9833 24 6 2.7247 -0.0502 -8.4080 25 7 2.6721 -1.3515 -8.5830 26 14 2.9052 1.0838 -9.8814 27 1 4.1526 1.8780 -9.7449 28 1 2.9670 0.2740 -11.1246 29 1 1.7390 2.0009 -9.9462 30 1 -0.3633 -1.0254 0.0695 31 1 -0.3633 0.5728 0.8532 32 1 -0.3634 0.4524 -0.9227 33 1 1.4525 -1.6787 1.3980 34 1 2.1516 -0.1809 2.0859 35 1 5.9345 0.3339 2.5644 36 1 5.5048 1.4326 3.7606 37 1 2.5328 -3.0645 2.8818 38 1 2.5604 -2.1561 4.4868 39 1 4.9856 -2.8204 4.8205 40 1 4.9574 -3.7285 3.2154 41 1 4.2426 -0.5990 -1.0603 42 1 3.6678 -2.2882 -1.0410 43 1 1.4828 0.7307 -2.4310 44 1 3.1449 -1.4220 -3.5675 45 1 1.3734 -1.3302 -3.7146 46 1 2.4731 -1.3104 -6.1749 47 1 2.7273 -1.7233 -9.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570351386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:18 Heat of formation + Delta-G solvation = -106.343768 kcal Electronic energy + Delta-G solvation = -29500.803397 eV Core-core repulsion = 25297.000862 eV Total energy + Delta-G solvation = -4203.802535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99584 -40.59278 -40.04750 -39.06714 -37.06777 -36.21906 -35.56136 -34.76294 -33.51818 -33.20777 -30.33825 -28.18599 -27.44872 -26.53189 -25.74033 -23.55390 -23.51649 -22.15219 -21.31903 -20.95727 -20.23371 -19.88180 -18.94462 -18.31524 -18.02173 -17.50913 -17.20038 -16.74048 -16.38440 -16.26797 -16.07869 -15.79397 -15.57019 -15.37602 -15.24336 -14.95918 -14.77673 -14.37357 -14.06400 -13.96125 -13.75568 -13.51705 -13.34319 -13.31706 -12.93018 -12.74021 -12.57877 -12.43578 -12.30340 -12.16226 -12.13778 -12.00703 -11.75271 -11.51733 -11.50204 -11.32151 -10.91375 -10.84804 -10.35097 -10.01815 -9.80960 -9.42459 -8.46713 -5.95407 1.15730 1.33595 1.39628 1.41775 1.52397 1.64886 2.05338 2.28865 2.31933 2.69002 2.88134 3.16702 3.20800 3.37110 3.47976 3.58334 3.65931 3.69572 3.77782 4.04363 4.16696 4.27762 4.29434 4.47367 4.51276 4.52871 4.55093 4.58510 4.61001 4.72194 4.82262 4.85749 4.90181 4.99057 5.07728 5.11292 5.22400 5.39035 5.40924 5.68894 5.87876 6.08466 6.14248 6.28820 6.37914 6.59828 6.88680 7.07134 7.12480 7.56320 8.11409 8.70386 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002111 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.923020 B =13260.376668 C =13540.529003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.108 3.892 5 N -0.603 5.603 6 C 0.565 3.435 7 O -0.566 6.566 8 C -0.213 4.213 9 C 0.567 3.433 10 N -0.838 5.838 11 O -0.565 6.565 12 C -0.113 4.113 13 C -0.114 4.114 14 C 0.114 3.886 15 C 0.084 3.916 16 H 0.084 0.916 17 N -0.671 5.671 18 C 0.065 3.935 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.414 0.586 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.353 0.647 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -5.746 24.778 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.100 0.900 4 C -0.014 4.014 5 N -0.335 5.335 6 C 0.353 3.647 7 O -0.445 6.445 8 C -0.219 4.219 9 C 0.352 3.648 10 N -0.401 5.401 11 O -0.444 6.444 12 C -0.150 4.150 13 C -0.152 4.152 14 C -0.010 4.010 15 C -0.026 4.026 16 H 0.102 0.898 17 N -0.305 5.305 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.246 0.754 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.174 0.826 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.245 -5.153 25.165 25.786 hybrid contribution -0.017 0.275 -1.574 1.598 sum -2.262 -4.879 23.592 24.197 Atomic orbital electron populations 1.21727 0.91629 1.03515 1.02862 1.22532 0.97625 0.99253 0.92451 0.90032 1.22681 0.81807 0.99457 0.97480 1.48378 1.13125 1.65379 1.06615 1.19124 0.82711 0.76333 0.86501 1.90742 1.25219 1.50868 1.77636 1.21365 1.14848 0.94332 0.91356 1.19051 0.78677 0.83746 0.83372 1.43774 1.40379 1.19966 1.35953 1.90746 1.50898 1.77263 1.25475 1.23306 0.91151 0.97049 1.03528 1.23185 0.98953 0.91822 1.01197 1.21988 0.98659 1.01164 0.79140 1.22622 0.94257 0.95755 0.89948 0.89802 1.59932 1.53706 1.16671 1.00221 1.21598 1.03038 0.94352 0.87777 1.20863 0.82325 0.89415 0.84856 1.90496 1.56873 1.17573 1.86034 1.41931 1.64458 1.09634 1.05009 1.19617 1.49356 0.91666 0.85700 0.90333 1.26028 0.96372 0.97814 1.01049 1.69658 1.50145 1.11569 1.24708 0.85007 0.78921 0.77751 0.76787 1.19881 1.19525 1.19560 0.90610 0.90651 0.92630 0.87889 0.90010 0.76133 0.75359 0.85574 0.85896 0.86354 0.86638 0.92529 0.91219 0.82622 0.88269 0.90757 0.76953 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.31 71.98 0.67 -0.94 16 2 C -0.10 -1.55 3.09 -9.33 -0.03 -1.58 16 3 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 4 C 0.11 1.46 5.24 86.93 0.46 1.91 16 5 N -0.60 -11.68 3.32 -811.34 -2.70 -14.38 16 6 C 0.57 12.28 6.12 87.66 0.54 12.82 16 7 O -0.57 -16.47 17.21 -3.06 -0.05 -16.53 16 8 C -0.21 -3.61 1.62 -53.67 -0.09 -3.69 16 9 C 0.57 11.07 7.69 87.66 0.67 11.75 16 10 N -0.84 -13.44 8.74 -173.54 -1.52 -14.96 16 11 O -0.56 -13.80 17.11 -3.04 -0.05 -13.85 16 12 C -0.11 -1.27 8.76 30.60 0.27 -1.00 16 13 C -0.11 -1.48 9.94 30.60 0.30 -1.17 16 14 C 0.11 2.61 6.56 86.73 0.57 3.18 16 15 C 0.08 1.68 2.70 46.11 0.12 1.81 16 16 H 0.08 1.38 7.80 -2.38 -0.02 1.36 16 17 N -0.67 -19.13 5.92 -489.44 -2.90 -22.03 16 18 C 0.06 2.06 6.02 85.56 0.52 2.58 16 19 C 0.44 20.24 7.82 87.66 0.69 20.92 16 20 O -0.62 -33.81 15.78 -3.07 -0.05 -33.85 16 21 N -0.57 -28.93 5.29 -306.99 -1.62 -30.55 16 22 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 26 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 30 H 0.07 0.65 8.07 -2.38 -0.02 0.64 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.88 7.63 -2.39 -0.02 0.86 16 34 H 0.08 1.11 7.79 -2.38 -0.02 1.09 16 35 H 0.41 6.73 7.88 -92.71 -0.73 6.00 16 36 H 0.41 5.21 8.93 -92.71 -0.83 4.38 16 37 H 0.13 0.98 7.72 -2.39 -0.02 0.96 16 38 H 0.12 1.36 7.68 -2.39 -0.02 1.35 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.35 10.41 8.20 -89.69 -0.74 9.67 16 44 H 0.10 2.96 8.13 -2.39 -0.02 2.94 16 45 H 0.07 1.99 8.09 -2.38 -0.02 1.97 16 46 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 47 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -75.19 395.47 -2.59 -77.78 By element: Atomic # 1 Polarization: 46.26 SS G_CDS: -1.98 Total: 44.28 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 5.97 Total: 28.37 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -8.45 Total: -130.92 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -0.15 Total: -64.23 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.19 -2.59 -77.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570351386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.565 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds