Wall clock time and date at job start Tue Mar 31 2020 22:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.88932 * 2 1 4 4 C 1.55131 * 111.22829 * 236.08878 * 2 1 3 5 5 N 1.47425 * 104.72208 * 279.17460 * 4 2 1 6 6 C 1.34779 * 125.64783 * 155.81321 * 5 4 2 7 7 O 1.21273 * 119.99892 * 174.83766 * 6 5 4 8 8 C 1.50702 * 119.99957 * 354.83331 * 6 5 4 9 9 C 1.50710 * 115.55563 * 79.82326 * 8 6 5 10 10 N 1.34774 * 120.00165 * 31.24454 * 9 8 6 11 11 O 1.21282 * 119.99354 * 211.24095 * 9 8 6 12 12 C 1.52988 * 117.50189 * 294.13614 * 8 6 5 13 13 C 1.52993 * 60.03262 * 252.51903 * 12 8 6 14 14 C 1.47025 * 108.70209 * 335.55473 * 5 4 2 15 15 C 1.54320 * 107.27032 * 1.28482 * 14 5 4 16 16 H 1.09006 * 110.71957 * 263.82781 * 15 14 5 17 17 N 1.46902 * 110.71763 * 140.73726 * 15 14 5 18 18 C 1.46902 * 110.99950 * 86.45449 * 17 15 14 19 19 C 1.50705 * 109.46756 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99813 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99862 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99827 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00261 * 0.02562 * 22 21 19 24 24 C 1.38959 * 119.99799 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99676 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99884 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47625 * 60.00251 * 26 24 22 28 28 H 1.48502 * 109.47216 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47180 * 300.00444 * 26 24 22 30 30 H 1.08998 * 109.47624 * 296.11813 * 1 2 3 31 31 H 1.09009 * 109.46883 * 56.12126 * 1 2 3 32 32 H 1.09000 * 109.46921 * 176.11703 * 1 2 3 33 33 H 1.08998 * 110.50010 * 160.33382 * 4 2 1 34 34 H 1.09005 * 110.34017 * 37.94054 * 4 2 1 35 35 H 0.97005 * 119.99756 * 4.97721 * 10 9 8 36 36 H 0.96996 * 119.99567 * 184.97651 * 10 9 8 37 37 H 1.09005 * 117.50193 * 145.02317 * 12 8 6 38 38 H 1.09003 * 117.50193 * 0.02562 * 12 8 6 39 39 H 1.09004 * 117.50143 * 107.47596 * 13 12 8 40 40 H 1.09002 * 117.49900 * 252.47490 * 13 12 8 41 41 H 1.08997 * 109.87891 * 120.70183 * 14 5 4 42 42 H 1.08996 * 109.88084 * 241.71274 * 14 5 4 43 43 H 1.00905 * 110.99783 * 210.40397 * 17 15 14 44 44 H 1.09003 * 109.46926 * 299.99288 * 18 17 15 45 45 H 1.08994 * 109.47632 * 59.99745 * 18 17 15 46 46 H 0.96995 * 119.99850 * 0.02562 * 21 19 18 47 47 H 0.97004 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0917 -0.8068 -1.2001 5 7 2.0154 -2.2157 -0.7729 6 6 1.9494 -3.2828 -1.5935 7 8 1.9843 -4.4044 -1.1336 8 6 1.8324 -3.0822 -3.0825 9 6 3.1188 -2.7592 -3.7982 10 7 4.2869 -3.2504 -3.3393 11 8 3.1027 -2.0572 -4.7871 12 6 0.5494 -2.4368 -3.6097 13 6 0.8004 -3.9297 -3.8308 14 6 2.0295 -2.2643 0.6965 15 6 2.0861 -0.8075 1.2025 16 1 3.1131 -0.5150 1.4216 17 7 1.2347 -0.6354 2.3872 18 6 1.9656 -0.9769 3.6148 19 6 1.0622 -0.7880 4.8062 20 8 -0.0781 -0.4059 4.6481 21 7 1.5214 -1.0436 6.0473 22 6 0.6998 -0.8712 7.1311 23 1 -0.3155 -0.5310 6.9904 24 6 1.1730 -1.1352 8.4107 25 7 2.4082 -1.5497 8.5818 26 14 0.0533 -0.9010 9.8874 27 1 -1.1329 -1.7844 9.7544 28 1 0.7919 -1.2469 11.1284 29 1 -0.3891 0.5150 9.9535 30 1 -0.3634 0.4524 0.9227 31 1 -0.3633 0.5729 -0.8533 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1260 -0.5259 -1.3982 34 1 1.4775 -0.6451 -2.0860 35 1 4.2928 -3.8696 -2.5926 36 1 5.1217 -2.9848 -3.7558 37 1 0.6356 -1.7785 -4.4743 38 1 -0.2100 -2.1567 -2.8796 39 1 0.2066 -4.6320 -3.2458 40 1 1.0515 -4.2536 -4.8409 41 1 1.1229 -2.7480 1.0600 42 1 2.9060 -2.8131 1.0408 43 1 0.8667 0.3030 2.4347 44 1 2.2913 -2.0161 3.5666 45 1 2.8356 -0.3277 3.7124 46 1 2.4333 -1.3488 6.1737 47 1 2.7387 -1.7337 9.4750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570351388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:27 Heat of formation + Delta-G solvation = -101.895813 kcal Electronic energy + Delta-G solvation = -29679.639565 eV Core-core repulsion = 25476.029907 eV Total energy + Delta-G solvation = -4203.609658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01069 -40.62565 -40.03723 -39.11661 -37.02195 -36.21820 -35.56007 -34.75238 -33.33575 -33.03155 -30.24018 -28.23029 -27.63557 -26.59180 -25.69908 -23.79616 -23.57448 -22.15414 -21.09837 -20.76893 -20.20521 -19.88688 -19.03929 -18.29096 -17.78401 -17.42035 -17.24565 -16.74980 -16.52433 -16.30030 -16.09211 -15.80640 -15.58397 -15.39148 -15.15814 -15.00130 -14.67435 -14.42798 -14.11214 -13.94653 -13.59496 -13.46414 -13.23544 -13.15139 -13.09139 -12.83791 -12.63586 -12.42994 -12.28076 -12.13816 -12.07140 -11.84958 -11.76859 -11.56473 -11.49449 -11.31519 -10.89967 -10.82586 -10.33610 -10.01201 -9.78440 -9.39105 -8.46398 -5.94891 1.21209 1.30747 1.39860 1.41922 1.52557 1.66354 2.06288 2.29164 2.29887 2.69835 2.90803 3.17944 3.21325 3.39286 3.49551 3.57348 3.66694 3.71661 3.76370 4.04689 4.21007 4.25257 4.30877 4.49737 4.51787 4.54564 4.59511 4.60266 4.62460 4.75214 4.81500 4.82628 4.89528 5.04617 5.06558 5.13314 5.24347 5.41112 5.52082 5.72493 5.88012 6.08957 6.16130 6.30545 6.40792 6.60376 6.90443 7.10028 7.13011 7.57113 8.12123 8.70749 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002104 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.843395 B =13301.817913 C =13562.998220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.117 0.883 4 C 0.102 3.898 5 N -0.599 5.599 6 C 0.565 3.435 7 O -0.566 6.566 8 C -0.208 4.208 9 C 0.570 3.430 10 N -0.834 5.834 11 O -0.563 6.563 12 C -0.117 4.117 13 C -0.116 4.116 14 C 0.117 3.883 15 C 0.082 3.918 16 H 0.081 0.919 17 N -0.666 5.666 18 C 0.064 3.936 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.409 0.591 36 H 0.415 0.585 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.354 0.646 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 0.485 -25.012 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.135 0.865 4 C -0.020 4.020 5 N -0.331 5.331 6 C 0.353 3.647 7 O -0.445 6.445 8 C -0.215 4.215 9 C 0.354 3.646 10 N -0.398 5.398 11 O -0.442 6.442 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.007 4.007 15 C -0.029 4.029 16 H 0.099 0.901 17 N -0.301 5.301 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.239 0.761 36 H 0.248 0.752 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.176 0.824 44 H 0.116 0.884 45 H 0.091 0.909 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.986 -0.115 -25.378 25.689 hybrid contribution 1.011 0.126 1.613 1.908 sum 4.998 0.011 -23.765 24.285 Atomic orbital electron populations 1.21565 0.93613 1.01526 1.02249 1.22573 0.97058 0.99805 0.92030 0.86488 1.22698 1.02340 0.78565 0.98377 1.48341 1.71030 1.07181 1.06537 1.19072 0.76071 0.83092 0.86461 1.90740 1.51672 1.24505 1.77601 1.21385 0.93299 1.15240 0.91566 1.18955 0.84419 0.78343 0.82883 1.43699 1.08415 1.49316 1.38336 1.90752 1.87020 1.39610 1.26821 1.23232 0.92361 0.96435 1.03384 1.23173 0.96102 0.94966 1.01087 1.21941 1.01694 0.97903 0.79141 1.22574 0.96283 0.93817 0.90212 0.90142 1.60002 1.36242 1.33953 0.99908 1.21600 0.94246 1.03051 0.87968 1.20859 0.88990 0.82685 0.84847 1.90495 1.21555 1.52664 1.86085 1.41934 1.14688 1.59477 1.05031 1.19620 0.96761 1.44235 0.85650 0.90285 1.26031 0.97939 0.96253 1.01103 1.69664 1.16125 1.45591 1.24778 0.85005 0.77798 0.78878 0.76772 1.19865 1.19583 1.19545 0.92660 0.90748 0.94136 0.89540 0.88697 0.76106 0.75162 0.85664 0.86525 0.87107 0.86047 0.92490 0.91586 0.82403 0.88413 0.90923 0.77008 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.77 71.98 0.63 -1.71 16 2 C -0.10 -1.40 3.46 -9.33 -0.03 -1.43 16 3 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 4 C 0.10 1.40 6.21 86.93 0.54 1.94 16 5 N -0.60 -11.49 3.31 -811.35 -2.69 -14.17 16 6 C 0.57 12.23 6.13 87.66 0.54 12.76 16 7 O -0.57 -16.49 17.33 -3.01 -0.05 -16.55 16 8 C -0.21 -3.54 1.60 -53.65 -0.09 -3.62 16 9 C 0.57 10.01 7.68 87.66 0.67 10.68 16 10 N -0.83 -10.47 8.74 -173.53 -1.52 -11.98 16 11 O -0.56 -12.87 17.10 -3.04 -0.05 -12.92 16 12 C -0.12 -1.55 8.37 30.59 0.26 -1.29 16 13 C -0.12 -1.66 9.86 30.61 0.30 -1.36 16 14 C 0.12 2.65 6.24 86.73 0.54 3.19 16 15 C 0.08 1.60 3.02 46.10 0.14 1.74 16 16 H 0.08 1.33 7.89 -2.38 -0.02 1.31 16 17 N -0.67 -18.50 5.13 -489.44 -2.51 -21.02 16 18 C 0.06 2.02 6.02 85.56 0.52 2.54 16 19 C 0.44 20.15 7.82 87.66 0.69 20.84 16 20 O -0.62 -33.38 15.78 -3.07 -0.05 -33.43 16 21 N -0.57 -28.94 5.29 -306.98 -1.62 -30.56 16 22 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.43 13.05 21.67 0.28 -49.15 16 26 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 30 H 0.05 1.20 6.70 -2.39 -0.02 1.18 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.04 0.87 7.91 -2.39 -0.02 0.85 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.14 6.35 -2.38 -0.02 1.13 16 35 H 0.41 4.99 8.11 -92.70 -0.75 4.24 16 36 H 0.42 3.67 8.93 -92.71 -0.83 2.84 16 37 H 0.13 1.56 7.67 -2.38 -0.02 1.54 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.35 10.12 7.00 -89.69 -0.63 9.49 16 44 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 45 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 46 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 47 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -74.55 392.11 -2.09 -76.64 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -1.89 Total: 42.29 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 5.98 Total: 26.11 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -8.06 Total: -126.88 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -0.15 Total: -62.89 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.55 -2.09 -76.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570351388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.257 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds