Wall clock time and date at job start Tue Mar 31 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46611 * 2 1 4 4 N 1.46496 * 109.46811 * 119.99916 * 2 1 3 5 5 C 1.34779 * 119.99965 * 274.99773 * 4 2 1 6 6 O 1.21276 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00005 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47311 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.46976 * 180.02562 * 8 7 5 10 10 C 1.41378 * 126.79700 * 124.71544 * 9 8 7 11 11 C 1.35458 * 103.98222 * 179.88617 * 10 9 8 12 12 O 1.34042 * 106.44298 * 0.36169 * 11 10 9 13 13 N 1.20921 * 111.57094 * 359.75331 * 12 11 10 14 14 C 1.52999 * 109.46997 * 240.00095 * 2 1 3 15 15 H 1.09001 * 109.47362 * 299.99445 * 14 2 1 16 16 C 1.53006 * 109.46623 * 179.97438 * 14 2 1 17 17 N 1.46898 * 109.47548 * 60.00184 * 14 2 1 18 18 C 1.46900 * 110.99922 * 204.99872 * 17 14 2 19 19 C 1.50704 * 109.46782 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00249 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99818 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00065 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99863 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00027 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99942 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47287 * 90.00014 * 26 24 22 28 28 H 1.48501 * 109.47153 * 210.00245 * 26 24 22 29 29 H 1.48505 * 109.47189 * 330.00096 * 26 24 22 30 30 H 1.09000 * 109.46866 * 60.00117 * 1 2 3 31 31 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47377 * 300.00266 * 1 2 3 33 33 H 0.97001 * 119.99853 * 95.00057 * 4 2 1 34 34 H 1.09007 * 109.46994 * 300.00448 * 7 5 4 35 35 H 1.08999 * 109.47030 * 60.00390 * 7 5 4 36 36 H 1.08998 * 109.46809 * 300.00492 * 8 7 5 37 37 H 1.09008 * 109.46811 * 60.00176 * 8 7 5 38 38 H 1.07998 * 128.01057 * 0.02562 * 10 9 8 39 39 H 1.08001 * 126.77822 * 180.09830 * 11 10 9 40 40 H 1.09001 * 109.47002 * 179.97438 * 16 14 2 41 41 H 1.08993 * 109.46955 * 300.00075 * 16 14 2 42 42 H 1.09000 * 109.47050 * 59.99904 * 16 14 2 43 43 H 1.00893 * 111.00120 * 81.04124 * 17 14 2 44 44 H 1.08996 * 109.46839 * 299.99510 * 18 17 14 45 45 H 1.09003 * 109.47177 * 60.00055 * 18 17 14 46 46 H 0.97002 * 120.00090 * 359.97438 * 21 19 18 47 47 H 0.96995 * 119.99926 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 2.7006 0.2545 4.7589 9 6 3.2040 -0.4557 5.9891 10 6 4.3072 -0.0823 6.7906 11 6 4.3421 -1.0276 7.7601 12 8 3.3313 -1.8702 7.5051 13 7 2.7126 -1.5374 6.5210 14 6 2.0400 -0.7212 -1.2493 15 1 1.6768 -1.7489 -1.2493 16 6 3.5701 -0.7206 -1.2495 17 7 1.5504 -0.0288 -2.4487 18 6 1.4877 -0.9439 -3.5961 19 6 0.9817 -0.1997 -4.8050 20 8 0.7005 0.9770 -4.7190 21 7 0.8416 -0.8418 -5.9816 22 6 0.3818 -0.1647 -7.0815 23 1 0.1314 0.8831 -7.0050 24 6 0.2368 -0.8269 -8.2945 25 7 -0.2044 -0.1780 -9.3487 26 14 0.6692 -2.6393 -8.4268 27 1 -0.5310 -3.4582 -8.1199 28 1 1.1331 -2.9382 -9.8054 29 1 1.7492 -2.9624 -7.4601 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 1.9776 -1.5508 3.8325 35 1 3.6492 -1.1202 3.3980 36 1 3.3726 1.0770 4.5140 37 1 1.7010 0.6459 4.9483 38 1 4.9676 0.7624 6.6612 39 1 5.0480 -1.0923 8.5750 40 1 3.9335 -1.2348 -2.1392 41 1 3.9330 0.3071 -1.2497 42 1 3.9338 -1.2342 -0.3595 43 1 2.1205 0.7766 -2.6593 44 1 2.4831 -1.3375 -3.8017 45 1 0.8113 -1.7675 -3.3675 46 1 1.0668 -1.7828 -6.0505 47 1 -0.3059 -0.6403 -10.1953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570622240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:24 Heat of formation + Delta-G solvation = -42.780744 kcal Electronic energy + Delta-G solvation = -28073.601393 eV Core-core repulsion = 23872.555158 eV Total energy + Delta-G solvation = -4201.046236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.85196 -41.04770 -40.30304 -38.52191 -36.32358 -36.05065 -35.38967 -33.74374 -33.19755 -32.37560 -31.53972 -30.55402 -28.08036 -26.60781 -25.66779 -24.20871 -24.01980 -21.98016 -21.70761 -21.24382 -21.08559 -20.27168 -18.85688 -18.47767 -18.08176 -17.56626 -17.40589 -16.80297 -16.66216 -16.48034 -15.77930 -15.70420 -15.27901 -15.15755 -15.06513 -14.80753 -14.48377 -14.34782 -14.24432 -14.10071 -13.86287 -13.56794 -13.39017 -13.30182 -13.08508 -13.02439 -12.72483 -12.62019 -12.53001 -12.40261 -12.21437 -11.97321 -11.95987 -11.66064 -11.50365 -11.07943 -10.82262 -10.51230 -10.43825 -10.23830 -10.11903 -9.28266 -8.40426 -6.01565 0.66235 1.30526 1.30978 1.36931 1.45538 1.64419 1.97706 2.07694 2.24112 2.52013 2.81573 3.16113 3.22918 3.46306 3.61656 3.66863 3.81677 4.01959 4.11343 4.17563 4.22289 4.23945 4.32911 4.44255 4.47923 4.53911 4.58228 4.61413 4.64629 4.74959 4.81805 4.86628 4.93766 4.98871 5.06094 5.09846 5.21590 5.24790 5.37802 5.52229 5.57107 5.92124 6.06660 6.35011 6.57696 6.60878 6.89458 7.28478 7.38579 7.41154 7.98583 8.77392 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034141 B = 0.001553 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.926456 B =18030.152920 C =18372.022283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.160 3.840 3 H 0.062 0.938 4 N -0.709 5.709 5 C 0.514 3.486 6 O -0.584 6.584 7 C -0.123 4.123 8 C -0.024 4.024 9 C 0.005 3.995 10 C -0.244 4.244 11 C -0.043 4.043 12 O 0.085 5.915 13 N -0.396 5.396 14 C 0.085 3.915 15 H 0.106 0.894 16 C -0.179 4.179 17 N -0.678 5.678 18 C 0.066 3.934 19 C 0.447 3.553 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.053 0.947 24 C -0.016 4.016 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.258 1.258 28 H -0.276 1.276 29 H -0.228 1.228 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.416 0.584 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.192 0.808 39 H 0.260 0.740 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.345 0.655 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.929 -11.744 34.255 39.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.054 3.946 3 H 0.080 0.920 4 N -0.361 5.361 5 C 0.302 3.698 6 O -0.463 6.463 7 C -0.163 4.163 8 C -0.062 4.062 9 C -0.153 4.153 10 C -0.266 4.266 11 C -0.123 4.123 12 O 0.020 5.980 13 N -0.102 5.102 14 C -0.025 4.025 15 H 0.124 0.876 16 C -0.237 4.237 17 N -0.310 5.310 18 C -0.066 4.066 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.232 5.232 22 C -0.459 4.459 23 H 0.071 0.929 24 C -0.214 4.214 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.151 1.151 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.210 0.790 39 H 0.276 0.724 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.164 0.836 44 H 0.098 0.902 45 H 0.136 0.864 46 H 0.226 0.774 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.783 -11.005 33.977 37.934 hybrid contribution 1.316 0.015 -1.084 1.705 sum 14.099 -10.991 32.893 37.437 Atomic orbital electron populations 1.21946 0.95323 1.02144 1.01076 1.20627 0.93985 0.96339 0.83636 0.92019 1.45882 1.66755 1.14671 1.08818 1.21009 0.76703 0.86825 0.85279 1.90721 1.51822 1.18179 1.85625 1.21555 1.04807 0.99184 0.90795 1.19650 1.02422 0.96586 0.87581 1.23845 0.96517 0.94490 1.00488 1.23148 1.01369 1.04930 0.97136 1.26879 0.93159 0.90019 1.02288 1.84803 1.34191 1.45029 1.33987 1.73850 1.19176 1.16902 1.00318 1.21763 0.93731 0.98544 0.88450 0.87614 1.22477 0.95520 1.02265 1.03469 1.59936 1.58792 1.09268 1.02976 1.21645 1.01988 0.95246 0.87729 1.21060 0.82453 0.87947 0.85007 1.90560 1.55292 1.18870 1.85275 1.42014 1.60591 1.11890 1.08753 1.19010 1.42371 0.96084 0.88462 0.92878 1.26141 0.96377 1.05101 0.93804 1.69813 1.46356 1.39638 1.01848 0.85345 0.80243 0.76353 0.79424 1.18205 1.20166 1.15146 0.92016 0.91570 0.94525 0.74700 0.87674 0.86409 0.88522 0.90837 0.79040 0.72415 0.91700 0.93444 0.89913 0.83615 0.90204 0.86437 0.77408 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.33 71.98 0.67 -2.88 16 2 C 0.16 3.34 2.34 44.99 0.11 3.44 16 3 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 4 N -0.71 -10.59 4.38 -442.53 -1.94 -12.53 16 5 C 0.51 9.63 7.79 87.66 0.68 10.31 16 6 O -0.58 -16.55 15.64 -3.02 -0.05 -16.60 16 7 C -0.12 -1.53 5.67 29.85 0.17 -1.36 16 8 C -0.02 -0.35 5.10 29.85 0.15 -0.20 16 9 C 0.00 0.07 6.59 43.58 0.29 0.36 16 10 C -0.24 -2.11 11.12 22.40 0.25 -1.86 16 11 C -0.04 -0.24 12.30 67.18 0.83 0.58 16 12 O 0.08 1.12 11.20 71.62 0.80 1.92 16 13 N -0.40 -6.84 12.06 -49.58 -0.60 -7.44 16 14 C 0.09 1.55 2.22 44.92 0.10 1.65 16 15 H 0.11 1.47 7.80 -2.39 -0.02 1.45 16 16 C -0.18 -2.66 9.00 71.98 0.65 -2.01 16 17 N -0.68 -18.47 5.11 -495.56 -2.53 -21.00 16 18 C 0.07 1.85 5.97 85.56 0.51 2.36 16 19 C 0.45 19.70 7.82 87.66 0.69 20.38 16 20 O -0.62 -34.02 15.78 -3.07 -0.05 -34.06 16 21 N -0.59 -27.32 5.09 -306.98 -1.56 -28.88 16 22 C -0.33 -19.31 10.16 84.04 0.85 -18.45 16 23 H 0.05 3.73 7.39 -2.91 -0.02 3.70 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 25 N -0.94 -56.54 13.96 21.66 0.30 -56.24 16 26 Si 0.97 38.20 27.74 68.60 1.90 40.10 16 27 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 28 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.23 -7.42 6.52 99.48 0.65 -6.78 16 30 H 0.06 1.82 7.60 -2.39 -0.02 1.80 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 3.30 8.39 -92.71 -0.78 2.52 16 34 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 37 H 0.07 1.35 8.10 -2.38 -0.02 1.33 16 38 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.26 -1.20 8.06 -2.91 -0.02 -1.23 16 40 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 41 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16 42 H 0.08 0.86 7.45 -2.39 -0.02 0.84 16 43 H 0.34 10.57 8.17 -89.70 -0.73 9.83 16 44 H 0.08 1.76 7.43 -2.39 -0.02 1.74 16 45 H 0.12 2.67 8.06 -2.39 -0.02 2.65 16 46 H 0.39 14.69 5.76 -92.71 -0.53 14.16 16 47 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -87.11 396.99 1.60 -85.51 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -1.08 Total: 37.29 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.41 Total: 11.91 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.33 Total: -126.08 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: 0.71 Total: -48.74 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.10 kcal Total: -87.11 1.60 -85.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570622240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.729 kcal (2) G-P(sol) polarization free energy of solvation -87.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds