Wall clock time and date at job start Tue Mar 31 2020 22:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00446 * 2 1 4 4 C 1.50698 * 110.76610 * 58.58688 * 3 2 1 5 5 O 1.20821 * 120.00244 * 212.66112 * 4 3 2 6 6 O 1.34232 * 119.99850 * 32.65360 * 4 3 2 7 7 C 1.55135 * 110.70874 * 181.78908 * 3 2 1 8 8 C 1.54905 * 101.65446 * 82.72318 * 7 3 2 9 9 N 1.47845 * 104.79494 * 37.07662 * 8 7 3 10 10 C 1.38579 * 111.00213 * 213.63654 * 9 8 7 11 11 N 1.31218 * 126.47862 * 120.86383 * 10 9 8 12 12 N 1.28524 * 109.86079 * 179.97438 * 11 10 9 13 13 C 1.30293 * 110.05805 * 359.97438 * 12 11 10 14 14 C 1.50699 * 126.35000 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.46979 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46965 * 300.02307 * 14 13 12 17 17 C 1.53002 * 109.47031 * 60.02037 * 14 13 12 18 18 C 1.50699 * 109.46541 * 175.00376 * 17 14 13 19 19 H 1.07997 * 120.00609 * 359.97438 * 18 17 14 20 20 C 1.37882 * 119.99655 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00321 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47072 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47143 * 119.99971 * 22 20 18 25 25 H 1.48494 * 109.47399 * 240.00091 * 22 20 18 26 26 N 1.36461 * 126.47082 * 300.55237 * 10 9 8 27 27 C 1.46495 * 127.13201 * 0.02949 * 26 10 9 28 28 C 1.47450 * 108.56578 * 335.90012 * 9 8 7 29 29 H 1.08996 * 109.46568 * 305.91617 * 1 2 3 30 30 H 1.08998 * 109.46691 * 65.91166 * 1 2 3 31 31 H 1.08996 * 109.46976 * 185.91866 * 1 2 3 32 32 H 0.96698 * 116.99863 * 179.97438 * 6 4 3 33 33 H 1.09000 * 110.99758 * 200.81972 * 7 3 2 34 34 H 1.09001 * 110.98939 * 324.63928 * 7 3 2 35 35 H 1.08999 * 110.38031 * 278.24280 * 8 7 3 36 36 H 1.09002 * 110.37204 * 155.89466 * 8 7 3 37 37 H 1.08999 * 109.46830 * 59.99598 * 16 14 13 38 38 H 1.08999 * 109.46896 * 180.02562 * 16 14 13 39 39 H 1.09007 * 109.46874 * 300.00029 * 16 14 13 40 40 H 1.08998 * 109.47124 * 294.99715 * 17 14 13 41 41 H 1.08992 * 109.47197 * 55.00174 * 17 14 13 42 42 H 0.96997 * 120.00513 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.46944 * 90.03651 * 27 26 10 44 44 H 1.09000 * 109.46904 * 210.02606 * 27 26 10 45 45 H 1.09000 * 109.47851 * 330.03208 * 27 26 10 46 46 H 1.08992 * 109.88978 * 120.40016 * 28 9 8 47 47 H 1.09001 * 109.88832 * 241.58817 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.5568 2.0923 1.2026 5 8 1.4185 3.2900 1.1238 6 8 1.3063 1.4625 2.3612 7 6 3.5585 1.2165 -0.0453 8 6 3.8168 1.0259 -1.5607 9 7 2.8031 1.8719 -2.2258 10 6 2.3873 1.3035 -3.4193 11 7 1.1609 0.9585 -3.7337 12 7 1.1371 0.4625 -4.9191 13 6 2.3367 0.4620 -5.4275 14 6 2.7272 -0.0373 -6.7947 15 1 3.8003 0.0920 -6.9359 16 6 2.3719 -1.5205 -6.9166 17 6 1.9728 0.7573 -7.8626 18 6 2.4531 0.3432 -9.2296 19 1 3.2201 -0.4109 -9.3271 20 6 1.9142 0.9279 -10.3560 21 7 0.9806 1.8466 -10.2374 22 14 2.5100 0.4152 -12.0506 23 1 3.5573 -0.6285 -11.9122 24 1 1.3705 -0.1282 -12.8325 25 1 3.0756 1.5943 -12.7541 26 7 3.1751 1.0021 -4.4920 27 6 4.6199 1.2113 -4.6148 28 6 1.6669 2.0556 -1.3041 29 1 -0.3632 0.6028 0.8323 30 1 -0.3633 0.4194 -0.9382 31 1 -0.3633 -1.0222 0.1060 32 1 1.0182 2.0094 3.1048 33 1 4.0134 2.1391 0.3153 34 1 3.9171 0.3581 0.5228 35 1 3.6817 -0.0190 -1.8403 36 1 4.8207 1.3622 -1.8198 37 1 1.2988 -1.6498 -6.7753 38 1 2.6547 -1.8818 -7.9053 39 1 2.9093 -2.0866 -6.1558 40 1 0.9047 0.5578 -7.7770 41 1 2.1561 1.8222 -7.7202 42 1 0.6017 2.2582 -11.0298 43 1 5.1467 0.3260 -4.2588 44 1 4.8737 1.3894 -5.6597 45 1 4.9142 2.0741 -4.0173 46 1 1.5261 3.1161 -1.0958 47 1 0.7611 1.6385 -1.7443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599078564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:56 Heat of formation + Delta-G solvation = -36.238056 kcal Electronic energy + Delta-G solvation = -30556.910190 eV Core-core repulsion = 26356.147666 eV Total energy + Delta-G solvation = -4200.762524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.72103 -41.37395 -39.29494 -37.24467 -36.53511 -35.36975 -34.51007 -32.53536 -31.84750 -29.49730 -28.32091 -27.44609 -26.94679 -26.84219 -24.83396 -24.10973 -22.59239 -22.01584 -20.95168 -20.38873 -19.10155 -18.87419 -17.90221 -17.52921 -16.68467 -16.50010 -16.06915 -15.77833 -15.73292 -15.31142 -14.83950 -14.69506 -14.49578 -13.96876 -13.75676 -13.50537 -13.23125 -13.15482 -12.96759 -12.77684 -12.51941 -12.39362 -12.27309 -12.13062 -11.97105 -11.78051 -11.58095 -11.27742 -11.06329 -10.95268 -10.92821 -10.71674 -10.48130 -10.44329 -10.13659 -9.95478 -9.84009 -9.75614 -9.28176 -9.10171 -8.37099 -7.98544 -6.00286 -4.04064 1.57509 2.05217 2.27522 2.51719 3.06979 3.26520 3.30480 3.38336 3.40807 3.61621 3.87409 3.96056 4.43646 4.50510 4.61700 4.75398 4.77022 4.90507 5.00097 5.05714 5.10621 5.13319 5.22732 5.29921 5.34159 5.35511 5.39469 5.45533 5.48755 5.57835 5.66442 5.94271 6.02754 6.06461 6.14425 6.26471 6.42406 6.52344 6.69241 6.75986 6.88911 7.03639 7.34497 7.37671 7.63263 7.78865 7.99081 8.34744 9.01859 9.19588 9.59557 11.10772 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.002455 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.786691 B =11401.545629 C =11549.556379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.350 6.350 3 C 0.106 3.894 4 C 0.471 3.529 5 O -0.498 6.498 6 O -0.503 6.503 7 C -0.106 4.106 8 C 0.044 3.956 9 N -0.432 5.432 10 C 0.327 3.673 11 N -0.322 5.322 12 N -0.281 5.281 13 C 0.216 3.784 14 C -0.001 4.001 15 H 0.072 0.928 16 C -0.125 4.125 17 C 0.037 3.963 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 N -0.483 5.483 27 C 0.075 3.925 28 C 0.031 3.969 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.409 0.591 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.014 0.986 42 H 0.261 0.739 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -2.402 25.153 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.268 6.268 3 C 0.063 3.937 4 C 0.311 3.689 5 O -0.385 6.385 6 O -0.315 6.315 7 C -0.144 4.144 8 C -0.083 4.083 9 N -0.155 5.155 10 C -0.030 4.030 11 N -0.167 5.167 12 N -0.118 5.118 13 C -0.051 4.051 14 C -0.023 4.023 15 H 0.091 0.909 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 N -0.178 5.178 27 C -0.068 4.068 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.268 0.732 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.133 0.867 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.000 -2.085 24.709 25.512 hybrid contribution 1.001 0.160 -0.329 1.066 sum 7.002 -1.925 24.380 25.438 Atomic orbital electron populations 1.23015 0.79648 1.03970 1.00991 1.88035 1.21022 1.23422 1.94314 1.22604 0.96701 0.84391 0.89996 1.23844 0.73589 0.86973 0.84522 1.90762 1.47423 1.16021 1.84278 1.84643 1.79235 1.45861 1.21724 1.22800 0.89422 1.05017 0.97170 1.23253 0.96260 0.96739 0.91999 1.60381 1.11956 1.42666 1.00504 1.22428 0.88682 1.02071 0.89822 1.74348 1.15308 1.17386 1.09610 1.73989 1.17972 1.17811 1.02075 1.25618 0.86017 0.98656 0.94801 1.19997 1.00607 0.96874 0.84782 0.90941 1.21670 1.01893 0.93358 1.01385 1.19119 0.96182 0.94151 0.90601 1.21171 1.21768 1.22313 0.90570 0.92280 1.25012 0.95031 0.95053 0.99221 1.69990 1.26975 1.26583 1.29304 0.86551 0.78668 0.78381 0.84471 1.19712 1.20980 1.21111 1.46078 1.09901 1.49093 1.12715 1.22071 0.76491 1.02805 1.05425 1.23526 0.94655 1.03155 0.88366 0.93699 0.92206 0.88392 0.73166 0.87992 0.87695 0.91398 0.88332 0.92059 0.90653 0.95026 0.94946 0.96770 0.92963 0.90689 0.88469 0.89241 0.86662 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.39 101.05 1.05 1.24 16 2 O -0.35 -3.92 10.27 -48.20 -0.50 -4.41 16 3 C 0.11 1.09 0.87 -89.95 -0.08 1.01 16 4 C 0.47 4.54 6.10 36.00 0.22 4.76 16 5 O -0.50 -5.97 16.36 -18.75 -0.31 -6.27 16 6 O -0.50 -3.54 12.41 -44.22 -0.55 -4.09 16 7 C -0.11 -0.84 6.23 -24.60 -0.15 -0.99 16 8 C 0.04 0.42 5.82 -2.30 -0.01 0.41 16 9 N -0.43 -5.63 5.22 -171.30 -0.89 -6.53 16 10 C 0.33 5.45 6.97 -318.86 -2.22 3.22 16 11 N -0.32 -6.38 10.47 30.32 0.32 -6.07 16 12 N -0.28 -6.16 12.18 32.99 0.40 -5.76 16 13 C 0.22 4.29 6.58 -154.02 -1.01 3.27 16 14 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 15 H 0.07 1.33 6.95 -51.93 -0.36 0.96 16 16 C -0.12 -2.33 8.98 37.16 0.33 -2.00 16 17 C 0.04 0.96 4.43 -27.88 -0.12 0.84 16 18 C -0.52 -14.03 8.41 -34.44 -0.29 -14.32 16 19 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 N -0.48 -7.85 3.21 -121.46 -0.39 -8.24 16 27 C 0.08 0.84 9.90 59.84 0.59 1.43 16 28 C 0.03 0.39 5.95 -2.83 -0.02 0.37 16 29 H 0.04 0.38 6.47 -51.93 -0.34 0.05 16 30 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 1.04 9.10 45.56 0.41 1.46 16 33 H 0.10 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 36 H 0.10 0.69 7.64 -51.93 -0.40 0.30 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 39 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.09 7.24 -51.93 -0.38 0.71 16 45 H 0.09 0.83 7.84 -51.93 -0.41 0.42 16 46 H 0.12 1.48 6.78 -51.93 -0.35 1.13 16 47 H 0.11 1.63 4.36 -51.93 -0.23 1.41 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -36.13 381.07 -8.54 -44.67 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.02 Total: 0.28 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.06 Total: 0.51 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.17 Total: -52.56 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.35 Total: -14.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.13 -8.54 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599078564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.435 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds