Wall clock time and date at job start Tue Mar 31 2020 22:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00446 * 2 1 4 4 C 1.50698 * 110.76610 * 58.58688 * 3 2 1 5 5 O 1.20821 * 120.00244 * 212.66112 * 4 3 2 6 6 O 1.34232 * 119.99850 * 32.65360 * 4 3 2 7 7 C 1.55135 * 110.70874 * 181.78908 * 3 2 1 8 8 C 1.54905 * 101.65446 * 82.72318 * 7 3 2 9 9 N 1.47845 * 104.79494 * 37.07662 * 8 7 3 10 10 C 1.38579 * 111.00213 * 213.63654 * 9 8 7 11 11 N 1.31218 * 126.47862 * 120.86383 * 10 9 8 12 12 N 1.28524 * 109.86079 * 179.97438 * 11 10 9 13 13 C 1.30293 * 110.05805 * 359.97438 * 12 11 10 14 14 C 1.50699 * 126.35000 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.46979 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46965 * 300.02307 * 14 13 12 17 17 C 1.53002 * 109.47031 * 60.02037 * 14 13 12 18 18 C 1.50699 * 109.46541 * 175.00376 * 17 14 13 19 19 H 1.07997 * 120.00609 * 359.97438 * 18 17 14 20 20 C 1.37882 * 119.99655 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00321 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47072 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47143 * 119.99971 * 22 20 18 25 25 H 1.48494 * 109.47399 * 240.00091 * 22 20 18 26 26 N 1.36461 * 126.47082 * 300.55237 * 10 9 8 27 27 C 1.46495 * 127.13201 * 0.02949 * 26 10 9 28 28 C 1.47450 * 108.56578 * 335.90012 * 9 8 7 29 29 H 1.08996 * 109.46568 * 305.91617 * 1 2 3 30 30 H 1.08998 * 109.46691 * 65.91166 * 1 2 3 31 31 H 1.08996 * 109.46976 * 185.91866 * 1 2 3 32 32 H 0.96698 * 116.99863 * 179.97438 * 6 4 3 33 33 H 1.09000 * 110.99758 * 200.81972 * 7 3 2 34 34 H 1.09001 * 110.98939 * 324.63928 * 7 3 2 35 35 H 1.08999 * 110.38031 * 278.24280 * 8 7 3 36 36 H 1.09002 * 110.37204 * 155.89466 * 8 7 3 37 37 H 1.08999 * 109.46830 * 59.99598 * 16 14 13 38 38 H 1.08999 * 109.46896 * 180.02562 * 16 14 13 39 39 H 1.09007 * 109.46874 * 300.00029 * 16 14 13 40 40 H 1.08998 * 109.47124 * 294.99715 * 17 14 13 41 41 H 1.08992 * 109.47197 * 55.00174 * 17 14 13 42 42 H 0.96997 * 120.00513 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.46944 * 90.03651 * 27 26 10 44 44 H 1.09000 * 109.46904 * 210.02606 * 27 26 10 45 45 H 1.09000 * 109.47851 * 330.03208 * 27 26 10 46 46 H 1.08992 * 109.88978 * 120.40016 * 28 9 8 47 47 H 1.09001 * 109.88832 * 241.58817 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.5568 2.0923 1.2026 5 8 1.4185 3.2900 1.1238 6 8 1.3063 1.4625 2.3612 7 6 3.5585 1.2165 -0.0453 8 6 3.8168 1.0259 -1.5607 9 7 2.8031 1.8719 -2.2258 10 6 2.3873 1.3035 -3.4193 11 7 1.1609 0.9585 -3.7337 12 7 1.1371 0.4625 -4.9191 13 6 2.3367 0.4620 -5.4275 14 6 2.7272 -0.0373 -6.7947 15 1 3.8003 0.0920 -6.9359 16 6 2.3719 -1.5205 -6.9166 17 6 1.9728 0.7573 -7.8626 18 6 2.4531 0.3432 -9.2296 19 1 3.2201 -0.4109 -9.3271 20 6 1.9142 0.9279 -10.3560 21 7 0.9806 1.8466 -10.2374 22 14 2.5100 0.4152 -12.0506 23 1 3.5573 -0.6285 -11.9122 24 1 1.3705 -0.1282 -12.8325 25 1 3.0756 1.5943 -12.7541 26 7 3.1751 1.0021 -4.4920 27 6 4.6199 1.2113 -4.6148 28 6 1.6669 2.0556 -1.3041 29 1 -0.3632 0.6028 0.8323 30 1 -0.3633 0.4194 -0.9382 31 1 -0.3633 -1.0222 0.1060 32 1 1.0182 2.0094 3.1048 33 1 4.0134 2.1391 0.3153 34 1 3.9171 0.3581 0.5228 35 1 3.6817 -0.0190 -1.8403 36 1 4.8207 1.3622 -1.8198 37 1 1.2988 -1.6498 -6.7753 38 1 2.6547 -1.8818 -7.9053 39 1 2.9093 -2.0866 -6.1558 40 1 0.9047 0.5578 -7.7770 41 1 2.1561 1.8222 -7.7202 42 1 0.6017 2.2582 -11.0298 43 1 5.1467 0.3260 -4.2588 44 1 4.8737 1.3894 -5.6597 45 1 4.9142 2.0741 -4.0173 46 1 1.5261 3.1161 -1.0958 47 1 0.7611 1.6385 -1.7443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599078564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:55 Heat of formation + Delta-G solvation = -61.113018 kcal Electronic energy + Delta-G solvation = -30557.988849 eV Core-core repulsion = 26356.147666 eV Total energy + Delta-G solvation = -4201.841183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.06579 -42.18777 -40.13498 -38.14454 -37.28355 -37.01772 -35.81847 -34.31671 -33.04407 -30.36090 -29.78432 -28.77428 -28.45182 -27.70639 -25.91606 -25.69762 -23.71208 -23.42909 -22.00979 -21.41975 -20.47709 -19.69633 -18.71677 -18.62255 -18.47339 -17.67839 -17.13610 -16.94472 -16.66813 -16.48038 -16.16590 -15.82836 -15.52707 -15.24710 -14.94868 -14.65134 -14.41542 -14.26600 -14.11816 -13.90385 -13.70492 -13.59074 -13.24288 -13.09387 -13.00431 -12.93247 -12.77215 -12.69498 -12.61960 -12.36285 -12.29380 -12.21259 -11.98074 -11.75227 -11.50880 -11.49441 -11.16604 -11.10946 -10.98943 -10.64522 -10.54900 -9.32500 -8.15374 -6.27142 0.76336 0.82886 1.18005 1.44379 1.45481 1.58110 1.70704 1.81955 2.30104 2.44450 2.61655 2.99883 3.18456 3.18904 3.46160 3.70943 3.82943 3.94271 3.97804 4.03929 4.13915 4.25999 4.31552 4.34307 4.43126 4.43589 4.46339 4.54178 4.61514 4.66268 4.69705 4.74074 4.76427 4.82231 5.00174 5.11725 5.19227 5.31719 5.35170 5.39628 5.46790 5.48015 5.71313 5.75185 5.85049 6.11740 6.21786 6.79287 6.89444 7.42212 7.77428 8.97386 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.002455 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.786691 B =11401.545629 C =11549.556379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.359 6.359 3 C 0.104 3.896 4 C 0.481 3.519 5 O -0.526 6.526 6 O -0.496 6.496 7 C -0.097 4.097 8 C 0.042 3.958 9 N -0.430 5.430 10 C 0.344 3.656 11 N -0.360 5.360 12 N -0.325 5.325 13 C 0.201 3.799 14 C 0.010 3.990 15 H 0.099 0.901 16 C -0.117 4.117 17 C 0.049 3.951 18 C -0.525 4.525 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.251 1.251 24 H -0.285 1.285 25 H -0.282 1.282 26 N -0.478 5.478 27 C 0.063 3.937 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.111 0.889 32 H 0.431 0.569 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.058 0.942 36 H 0.132 0.868 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.063 0.937 40 H -0.012 1.012 41 H -0.023 1.023 42 H 0.261 0.739 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -3.585 26.647 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.277 6.277 3 C 0.061 3.939 4 C 0.323 3.677 5 O -0.415 6.415 6 O -0.309 6.309 7 C -0.134 4.134 8 C -0.084 4.084 9 N -0.154 5.154 10 C -0.014 4.014 11 N -0.204 5.204 12 N -0.163 5.163 13 C -0.069 4.069 14 C -0.011 4.011 15 H 0.117 0.883 16 C -0.175 4.175 17 C 0.011 3.989 18 C -0.563 4.563 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.174 1.174 24 H -0.211 1.211 25 H -0.208 1.208 26 N -0.172 5.172 27 C -0.078 4.078 28 C -0.100 4.100 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.293 0.707 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.007 0.993 41 H -0.004 1.004 42 H 0.070 0.930 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.387 -3.290 26.250 28.072 hybrid contribution -0.060 0.595 -0.624 0.865 sum 9.327 -2.694 25.626 27.403 Atomic orbital electron populations 1.23064 0.79343 1.04930 1.00391 1.88019 1.21473 1.23947 1.94291 1.22599 0.98408 0.83769 0.89137 1.23566 0.72952 0.86274 0.84954 1.90763 1.48806 1.17129 1.84811 1.84585 1.78645 1.46006 1.21697 1.22917 0.87344 1.06944 0.96221 1.23476 0.96479 0.95729 0.92704 1.60549 1.12499 1.42681 0.99677 1.22789 0.87965 0.99764 0.90869 1.74270 1.17507 1.19400 1.09249 1.73879 1.19823 1.19255 1.03345 1.25336 0.86380 0.99904 0.95245 1.19748 1.01013 0.96830 0.83480 0.88335 1.21578 1.00894 0.92627 1.02386 1.18864 0.94369 0.92852 0.92830 1.21611 1.21605 1.22088 0.90981 0.90333 1.26043 0.95112 0.94998 1.04038 1.70165 1.28835 1.28363 1.30541 0.85363 0.78408 0.78395 0.78655 1.17434 1.21094 1.20838 1.46228 1.11515 1.47981 1.11523 1.22529 0.73572 1.05487 1.06183 1.23453 0.93906 1.03036 0.89648 0.92446 0.94311 0.87068 0.70680 0.86185 0.85477 0.92350 0.84998 0.94292 0.90703 0.91791 0.99344 1.00429 0.93028 0.87256 0.88571 0.87038 0.87284 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.39 113.37 1.18 1.54 16 2 O -0.36 -7.63 10.27 -136.58 -1.40 -9.04 16 3 C 0.10 1.97 0.87 -10.36 -0.01 1.96 16 4 C 0.48 8.48 6.10 71.24 0.43 8.91 16 5 O -0.53 -12.06 16.36 21.98 0.36 -11.70 16 6 O -0.50 -5.73 12.41 -46.70 -0.58 -6.31 16 7 C -0.10 -1.21 6.23 31.98 0.20 -1.01 16 8 C 0.04 0.66 5.82 86.77 0.51 1.17 16 9 N -0.43 -10.71 5.22 -695.87 -3.63 -14.34 16 10 C 0.34 11.43 6.97 260.11 1.81 13.25 16 11 N -0.36 -14.91 10.47 -58.00 -0.61 -15.51 16 12 N -0.33 -14.98 12.18 -49.54 -0.60 -15.59 16 13 C 0.20 8.08 6.58 137.64 0.91 8.99 16 14 C 0.01 0.41 2.70 -11.54 -0.03 0.38 16 15 H 0.10 3.44 6.95 -2.39 -0.02 3.43 16 16 C -0.12 -4.30 8.98 71.98 0.65 -3.66 16 17 C 0.05 2.63 4.43 29.85 0.13 2.76 16 18 C -0.52 -28.57 8.41 25.60 0.22 -28.35 16 19 H 0.08 3.89 7.06 -2.91 -0.02 3.87 16 20 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 21 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 22 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 23 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 N -0.48 -15.12 3.21 -538.19 -1.73 -16.85 16 27 C 0.06 1.21 9.90 127.77 1.26 2.48 16 28 C 0.03 0.69 5.95 86.65 0.52 1.20 16 29 H 0.06 0.94 6.47 -2.39 -0.02 0.92 16 30 H 0.04 0.92 6.49 -2.39 -0.02 0.90 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.43 1.05 9.10 -74.06 -0.67 0.38 16 33 H 0.12 1.12 8.04 -2.39 -0.02 1.10 16 34 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.09 7.79 -2.39 -0.02 1.07 16 36 H 0.13 1.23 7.64 -2.39 -0.02 1.22 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 2.73 6.95 -2.39 -0.02 2.71 16 39 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 42 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 1.91 7.24 -2.39 -0.02 1.89 16 45 H 0.11 1.66 7.84 -2.39 -0.02 1.64 16 46 H 0.11 2.85 6.78 -2.39 -0.02 2.84 16 47 H 0.09 2.74 4.36 -2.39 -0.01 2.73 16 Total: -1.00 -83.52 381.07 2.69 -80.83 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.34 Total: 11.34 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 8.23 Total: 9.81 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -6.29 Total: -120.41 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -1.62 Total: -27.05 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -83.52 2.69 -80.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599078564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.717 kcal (2) G-P(sol) polarization free energy of solvation -83.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds