Wall clock time and date at job start Tue Mar 31 2020 22:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99892 * 2 1 4 4 C 1.50697 * 110.76672 * 58.58298 * 3 2 1 5 5 O 1.20825 * 119.99953 * 212.65509 * 4 3 2 6 6 O 1.34227 * 120.00046 * 32.65445 * 4 3 2 7 7 C 1.55138 * 110.70656 * 181.78486 * 3 2 1 8 8 C 1.54908 * 101.65053 * 82.72311 * 7 3 2 9 9 N 1.47849 * 104.79792 * 37.07190 * 8 7 3 10 10 C 1.38572 * 111.00134 * 213.63474 * 9 8 7 11 11 N 1.31221 * 126.47775 * 120.88573 * 10 9 8 12 12 N 1.28521 * 109.86317 * 179.69503 * 11 10 9 13 13 C 1.30298 * 110.05697 * 0.44840 * 12 11 10 14 14 C 1.50696 * 126.34836 * 179.82439 * 13 12 11 15 15 H 1.09009 * 109.46847 * 179.68430 * 14 13 12 16 16 C 1.52999 * 109.47182 * 59.69107 * 14 13 12 17 17 C 1.52993 * 109.47243 * 299.68662 * 14 13 12 18 18 C 1.50701 * 109.47037 * 185.00336 * 17 14 13 19 19 H 1.07996 * 120.00326 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99741 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00285 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47374 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47193 * 120.00015 * 22 20 18 25 25 H 1.48503 * 109.46794 * 239.99181 * 22 20 18 26 26 N 1.36460 * 126.47420 * 300.83646 * 10 9 8 27 27 C 1.46498 * 127.13176 * 0.02562 * 26 10 9 28 28 C 1.47440 * 108.56319 * 335.90236 * 9 8 7 29 29 H 1.09002 * 109.47351 * 65.91884 * 1 2 3 30 30 H 1.09005 * 109.46738 * 185.91996 * 1 2 3 31 31 H 1.09000 * 109.47505 * 305.91993 * 1 2 3 32 32 H 0.96708 * 117.00064 * 179.97438 * 6 4 3 33 33 H 1.08991 * 110.98795 * 200.81501 * 7 3 2 34 34 H 1.08998 * 110.99200 * 324.63705 * 7 3 2 35 35 H 1.09003 * 110.38144 * 278.24173 * 8 7 3 36 36 H 1.09002 * 110.37305 * 155.89612 * 8 7 3 37 37 H 1.09001 * 109.46974 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.47164 * 299.99612 * 16 14 13 39 39 H 1.09003 * 109.47113 * 59.99807 * 16 14 13 40 40 H 1.08997 * 109.47111 * 305.00114 * 17 14 13 41 41 H 1.08996 * 109.47252 * 65.00289 * 17 14 13 42 42 H 0.96996 * 120.00124 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.46785 * 270.01495 * 27 26 10 44 44 H 1.08989 * 109.47948 * 30.01477 * 27 26 10 45 45 H 1.09002 * 109.47063 * 150.02315 * 27 26 10 46 46 H 1.09000 * 109.89210 * 120.39876 * 28 9 8 47 47 H 1.09004 * 109.88989 * 241.58095 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5565 2.0924 1.2025 5 8 1.4183 3.2901 1.1237 6 8 1.3060 1.4627 2.3611 7 6 3.5584 1.2167 -0.0452 8 6 3.8167 1.0260 -1.5606 9 7 2.8029 1.8720 -2.2259 10 6 2.3873 1.3034 -3.4193 11 7 1.1609 0.9586 -3.7338 12 7 1.1362 0.4678 -4.9214 13 6 2.3369 0.4614 -5.4273 14 6 2.7273 -0.0377 -6.7946 15 1 3.8005 0.0914 -6.9357 16 6 1.9734 0.7576 -7.8623 17 6 2.3715 -1.5206 -6.9170 18 6 2.8722 -2.0501 -8.2361 19 1 3.3925 -1.3946 -8.9187 20 6 2.6659 -3.3715 -8.5716 21 7 2.0328 -4.1699 -7.7402 22 14 3.2872 -4.0279 -10.2064 23 1 3.9618 -2.9366 -10.9539 24 1 4.2510 -5.1311 -9.9628 25 1 2.1419 -4.5381 -11.0022 26 7 3.1760 0.9971 -4.4899 27 6 4.6219 1.2002 -4.6101 28 6 1.6668 2.0556 -1.3042 29 1 -0.3634 0.4193 -0.9382 30 1 -0.3633 -1.0223 0.1060 31 1 -0.3634 0.6029 0.8322 32 1 1.0178 2.0097 3.1047 33 1 4.0130 2.1394 0.3153 34 1 3.9170 0.3585 0.5230 35 1 3.6816 -0.0188 -1.8402 36 1 4.8206 1.3624 -1.8198 37 1 2.2562 0.3969 -8.8512 38 1 0.9003 0.6286 -7.7213 39 1 2.2270 1.8141 -7.7750 40 1 2.8381 -2.0746 -6.1025 41 1 1.2894 -1.6402 -6.8646 42 1 1.8874 -5.0994 -7.9763 43 1 4.8164 2.1877 -5.0285 44 1 5.0824 1.1259 -3.6251 45 1 5.0425 0.4383 -5.2663 46 1 1.5258 3.1161 -1.0959 47 1 0.7610 1.6384 -1.7444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599078570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:09 Heat of formation + Delta-G solvation = -35.155172 kcal Electronic energy + Delta-G solvation = -30640.030530 eV Core-core repulsion = 26439.314964 eV Total energy + Delta-G solvation = -4200.715566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.72364 -41.35030 -39.27414 -37.21198 -36.51642 -35.37605 -34.51021 -32.52753 -31.84092 -29.48478 -28.31541 -27.45941 -26.93840 -26.80067 -24.81912 -24.10809 -22.56954 -22.01480 -20.96238 -20.38876 -19.09121 -18.85892 -17.88350 -17.49296 -16.71470 -16.39092 -16.04497 -15.87013 -15.70086 -15.27825 -14.79269 -14.68899 -14.48673 -13.97097 -13.76110 -13.50565 -13.21557 -13.11953 -13.05562 -12.78445 -12.47717 -12.37038 -12.20895 -12.07334 -11.94157 -11.76414 -11.52503 -11.27477 -11.04477 -10.93941 -10.91388 -10.73252 -10.53383 -10.35982 -10.12907 -10.01017 -9.86207 -9.62292 -9.32859 -9.10585 -8.37931 -7.98935 -6.01404 -4.05022 1.59233 2.04041 2.30593 2.53396 3.11204 3.26486 3.29723 3.37811 3.40417 3.62958 3.89947 3.99117 4.42897 4.49853 4.63604 4.74715 4.80734 4.88805 5.03224 5.07292 5.12550 5.18563 5.27028 5.31734 5.34323 5.37260 5.40336 5.48796 5.52675 5.59841 5.66961 5.95854 6.03689 6.06741 6.15182 6.26297 6.42630 6.57972 6.69718 6.76461 6.88898 7.04240 7.34539 7.39733 7.61557 7.77951 7.97991 8.33928 9.00863 9.19535 9.58663 11.09647 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002643 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.611069 B =10592.549876 C =11007.213845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.348 6.348 3 C 0.105 3.895 4 C 0.472 3.528 5 O -0.500 6.500 6 O -0.502 6.502 7 C -0.106 4.106 8 C 0.041 3.959 9 N -0.432 5.432 10 C 0.326 3.674 11 N -0.322 5.322 12 N -0.281 5.281 13 C 0.217 3.783 14 C -0.002 4.002 15 H 0.072 0.928 16 C -0.126 4.126 17 C 0.038 3.962 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 N -0.483 5.483 27 C 0.075 3.925 28 C 0.031 3.969 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.409 0.591 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.013 0.987 41 H 0.032 0.968 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.484 12.883 18.806 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.266 6.266 3 C 0.062 3.938 4 C 0.312 3.688 5 O -0.387 6.387 6 O -0.313 6.313 7 C -0.144 4.144 8 C -0.086 4.086 9 N -0.155 5.155 10 C -0.031 4.031 11 N -0.166 5.166 12 N -0.119 5.119 13 C -0.051 4.051 14 C -0.023 4.023 15 H 0.091 0.909 16 C -0.184 4.184 17 C 0.000 4.000 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 N -0.178 5.178 27 C -0.068 4.068 28 C -0.097 4.097 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.268 0.732 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.133 0.867 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.355 12.906 18.481 22.790 hybrid contribution 1.091 -0.329 -0.130 1.147 sum 4.446 12.576 18.352 22.687 Atomic orbital electron populations 1.23019 0.79636 1.04096 1.00842 1.88065 1.21031 1.23252 1.94272 1.22608 0.96734 0.84491 0.89943 1.23855 0.73487 0.86937 0.84531 1.90751 1.47607 1.16039 1.84326 1.84654 1.79169 1.45826 1.21700 1.22798 0.89435 1.05024 0.97111 1.23297 0.96228 0.96999 0.92085 1.60425 1.11931 1.42636 1.00498 1.22448 0.88686 1.01980 0.89940 1.74352 1.15474 1.17358 1.09460 1.73990 1.18301 1.17403 1.02167 1.25613 0.85983 0.98218 0.95237 1.19998 0.99368 0.99894 0.83015 0.90939 1.21674 1.00985 0.96671 0.99037 1.19110 0.98313 0.85543 0.97011 1.21177 1.36970 0.95031 1.02632 0.92272 1.25007 0.95247 0.97096 0.96945 1.69990 1.41368 1.05708 1.35811 0.86553 0.78589 0.78941 0.84006 1.19704 1.21113 1.20976 1.46080 1.09800 1.48899 1.12997 1.22114 0.76617 1.03769 1.04334 1.23519 0.94676 1.03027 0.88467 0.92266 0.88280 0.93758 0.73187 0.88029 0.87598 0.91074 0.88235 0.90654 0.92047 0.94948 0.96841 0.94958 0.92977 0.90269 0.89678 0.88602 0.86732 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.39 101.05 1.05 1.26 16 2 O -0.35 -4.25 10.27 -48.19 -0.50 -4.75 16 3 C 0.11 1.13 0.87 -89.95 -0.08 1.05 16 4 C 0.47 4.67 6.10 36.00 0.22 4.89 16 5 O -0.50 -5.98 16.36 -18.75 -0.31 -6.29 16 6 O -0.50 -3.72 12.41 -44.20 -0.55 -4.27 16 7 C -0.11 -0.90 6.24 -24.59 -0.15 -1.05 16 8 C 0.04 0.41 5.50 -2.29 -0.01 0.40 16 9 N -0.43 -5.65 5.22 -171.30 -0.89 -6.55 16 10 C 0.33 5.45 6.98 -318.87 -2.23 3.23 16 11 N -0.32 -6.39 10.47 30.31 0.32 -6.07 16 12 N -0.28 -6.16 12.18 32.99 0.40 -5.76 16 13 C 0.22 4.30 6.58 -154.01 -1.01 3.29 16 14 C 0.00 -0.03 2.70 -91.78 -0.25 -0.28 16 15 H 0.07 1.33 6.94 -51.92 -0.36 0.97 16 16 C -0.13 -2.37 8.98 37.16 0.33 -2.03 16 17 C 0.04 0.97 4.43 -27.89 -0.12 0.85 16 18 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 19 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 N -0.48 -7.88 3.21 -121.46 -0.39 -8.27 16 27 C 0.07 0.84 10.80 59.85 0.65 1.48 16 28 C 0.03 0.39 5.95 -2.84 -0.02 0.37 16 29 H 0.06 0.70 6.50 -51.93 -0.34 0.36 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.40 6.47 -51.93 -0.34 0.07 16 32 H 0.41 1.15 9.10 45.56 0.41 1.57 16 33 H 0.10 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 36 H 0.10 0.75 6.68 -51.93 -0.35 0.40 16 37 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.74 5.44 -51.94 -0.28 0.46 16 45 H 0.10 1.05 7.23 -51.93 -0.38 0.68 16 46 H 0.11 1.43 6.78 -51.93 -0.35 1.08 16 47 H 0.11 1.64 4.36 -51.93 -0.23 1.41 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -35.82 378.29 -8.36 -44.18 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.85 Total: 1.04 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.01 Total: 0.75 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.17 Total: -52.39 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.35 Total: -15.31 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.82 -8.36 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599078570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.020 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds