Wall clock time and date at job start Tue Mar 31 2020 22:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99892 * 2 1 4 4 C 1.50697 * 110.76672 * 58.58298 * 3 2 1 5 5 O 1.20825 * 119.99953 * 212.65509 * 4 3 2 6 6 O 1.34227 * 120.00046 * 32.65445 * 4 3 2 7 7 C 1.55138 * 110.70656 * 181.78486 * 3 2 1 8 8 C 1.54908 * 101.65053 * 82.72311 * 7 3 2 9 9 N 1.47849 * 104.79792 * 37.07190 * 8 7 3 10 10 C 1.38572 * 111.00134 * 213.63474 * 9 8 7 11 11 N 1.31221 * 126.47775 * 120.88573 * 10 9 8 12 12 N 1.28521 * 109.86317 * 179.69503 * 11 10 9 13 13 C 1.30298 * 110.05697 * 0.44840 * 12 11 10 14 14 C 1.50696 * 126.34836 * 179.82439 * 13 12 11 15 15 H 1.09009 * 109.46847 * 179.68430 * 14 13 12 16 16 C 1.52999 * 109.47182 * 59.69107 * 14 13 12 17 17 C 1.52993 * 109.47243 * 299.68662 * 14 13 12 18 18 C 1.50701 * 109.47037 * 185.00336 * 17 14 13 19 19 H 1.07996 * 120.00326 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99741 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00285 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47374 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47193 * 120.00015 * 22 20 18 25 25 H 1.48503 * 109.46794 * 239.99181 * 22 20 18 26 26 N 1.36460 * 126.47420 * 300.83646 * 10 9 8 27 27 C 1.46498 * 127.13176 * 0.02562 * 26 10 9 28 28 C 1.47440 * 108.56319 * 335.90236 * 9 8 7 29 29 H 1.09002 * 109.47351 * 65.91884 * 1 2 3 30 30 H 1.09005 * 109.46738 * 185.91996 * 1 2 3 31 31 H 1.09000 * 109.47505 * 305.91993 * 1 2 3 32 32 H 0.96708 * 117.00064 * 179.97438 * 6 4 3 33 33 H 1.08991 * 110.98795 * 200.81501 * 7 3 2 34 34 H 1.08998 * 110.99200 * 324.63705 * 7 3 2 35 35 H 1.09003 * 110.38144 * 278.24173 * 8 7 3 36 36 H 1.09002 * 110.37305 * 155.89612 * 8 7 3 37 37 H 1.09001 * 109.46974 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.47164 * 299.99612 * 16 14 13 39 39 H 1.09003 * 109.47113 * 59.99807 * 16 14 13 40 40 H 1.08997 * 109.47111 * 305.00114 * 17 14 13 41 41 H 1.08996 * 109.47252 * 65.00289 * 17 14 13 42 42 H 0.96996 * 120.00124 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.46785 * 270.01495 * 27 26 10 44 44 H 1.08989 * 109.47948 * 30.01477 * 27 26 10 45 45 H 1.09002 * 109.47063 * 150.02315 * 27 26 10 46 46 H 1.09000 * 109.89210 * 120.39876 * 28 9 8 47 47 H 1.09004 * 109.88989 * 241.58095 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5565 2.0924 1.2025 5 8 1.4183 3.2901 1.1237 6 8 1.3060 1.4627 2.3611 7 6 3.5584 1.2167 -0.0452 8 6 3.8167 1.0260 -1.5606 9 7 2.8029 1.8720 -2.2259 10 6 2.3873 1.3034 -3.4193 11 7 1.1609 0.9586 -3.7338 12 7 1.1362 0.4678 -4.9214 13 6 2.3369 0.4614 -5.4273 14 6 2.7273 -0.0377 -6.7946 15 1 3.8005 0.0914 -6.9357 16 6 1.9734 0.7576 -7.8623 17 6 2.3715 -1.5206 -6.9170 18 6 2.8722 -2.0501 -8.2361 19 1 3.3925 -1.3946 -8.9187 20 6 2.6659 -3.3715 -8.5716 21 7 2.0328 -4.1699 -7.7402 22 14 3.2872 -4.0279 -10.2064 23 1 3.9618 -2.9366 -10.9539 24 1 4.2510 -5.1311 -9.9628 25 1 2.1419 -4.5381 -11.0022 26 7 3.1760 0.9971 -4.4899 27 6 4.6219 1.2002 -4.6101 28 6 1.6668 2.0556 -1.3042 29 1 -0.3634 0.4193 -0.9382 30 1 -0.3633 -1.0223 0.1060 31 1 -0.3634 0.6029 0.8322 32 1 1.0178 2.0097 3.1047 33 1 4.0130 2.1394 0.3153 34 1 3.9170 0.3585 0.5230 35 1 3.6816 -0.0188 -1.8402 36 1 4.8206 1.3624 -1.8198 37 1 2.2562 0.3969 -8.8512 38 1 0.9003 0.6286 -7.7213 39 1 2.2270 1.8141 -7.7750 40 1 2.8381 -2.0746 -6.1025 41 1 1.2894 -1.6402 -6.8646 42 1 1.8874 -5.0994 -7.9763 43 1 4.8164 2.1877 -5.0285 44 1 5.0824 1.1259 -3.6251 45 1 5.0425 0.4383 -5.2663 46 1 1.5258 3.1161 -1.0959 47 1 0.7610 1.6384 -1.7444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599078570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:08 Heat of formation + Delta-G solvation = -59.671081 kcal Electronic energy + Delta-G solvation = -30641.093620 eV Core-core repulsion = 26439.314964 eV Total energy + Delta-G solvation = -4201.778656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.08046 -42.19358 -40.14501 -38.16543 -37.28572 -37.02796 -35.83097 -34.31480 -33.05976 -30.39022 -29.79334 -28.77649 -28.48250 -27.72226 -25.91817 -25.70263 -23.72284 -23.43498 -22.06764 -21.43355 -20.48566 -19.70504 -18.72475 -18.60963 -18.48320 -17.59731 -17.26069 -16.93358 -16.71344 -16.45165 -16.17709 -15.83622 -15.54162 -15.26246 -14.95455 -14.70228 -14.42118 -14.29410 -14.07102 -13.97506 -13.80582 -13.57811 -13.25764 -13.12982 -12.91000 -12.89798 -12.77260 -12.69539 -12.61793 -12.37882 -12.30799 -12.21708 -11.94792 -11.75753 -11.69916 -11.36301 -11.18502 -11.04235 -11.01088 -10.68686 -10.53660 -9.34967 -8.15009 -6.26481 0.73644 0.82421 1.19169 1.44518 1.45867 1.58273 1.69920 1.80194 2.29755 2.44795 2.60391 2.98726 3.16628 3.19261 3.45003 3.66427 3.83331 3.92631 3.96907 4.00074 4.08665 4.23317 4.29653 4.31248 4.41707 4.43040 4.44621 4.52296 4.59733 4.63770 4.70415 4.72354 4.74717 4.80916 4.98360 5.10958 5.18721 5.29066 5.34088 5.37870 5.46256 5.47929 5.71286 5.75382 5.85407 6.10246 6.22330 6.79571 6.89746 7.42741 7.76251 8.97634 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002643 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.611069 B =10592.549876 C =11007.213845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.364 6.364 3 C 0.100 3.900 4 C 0.483 3.517 5 O -0.523 6.523 6 O -0.497 6.497 7 C -0.096 4.096 8 C 0.037 3.963 9 N -0.425 5.425 10 C 0.342 3.658 11 N -0.358 5.358 12 N -0.325 5.325 13 C 0.202 3.798 14 C 0.010 3.990 15 H 0.099 0.901 16 C -0.118 4.118 17 C 0.051 3.949 18 C -0.526 4.526 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.252 1.252 24 H -0.282 1.282 25 H -0.285 1.285 26 N -0.478 5.478 27 C 0.062 3.938 28 C 0.028 3.972 29 H 0.040 0.960 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.431 0.569 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.049 0.951 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.061 0.939 40 H -0.020 1.020 41 H -0.012 1.012 42 H 0.261 0.739 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 14.317 19.368 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.282 6.282 3 C 0.057 3.943 4 C 0.325 3.675 5 O -0.412 6.412 6 O -0.310 6.310 7 C -0.134 4.134 8 C -0.089 4.089 9 N -0.148 5.148 10 C -0.016 4.016 11 N -0.203 5.203 12 N -0.163 5.163 13 C -0.068 4.068 14 C -0.011 4.011 15 H 0.117 0.883 16 C -0.176 4.176 17 C 0.013 3.987 18 C -0.564 4.564 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.176 1.176 24 H -0.208 1.208 25 H -0.211 1.211 26 N -0.172 5.172 27 C -0.078 4.078 28 C -0.099 4.099 29 H 0.058 0.942 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.294 0.706 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.068 0.932 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.080 0.920 40 H -0.002 1.002 41 H 0.007 0.993 42 H 0.070 0.930 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.117 0.883 46 H 0.134 0.866 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.220 14.362 19.073 24.673 hybrid contribution 0.195 -0.738 -0.134 0.775 sum 6.414 13.624 18.939 24.196 Atomic orbital electron populations 1.23056 0.79314 1.04789 1.00523 1.88041 1.21562 1.24278 1.94326 1.22654 0.98306 0.83753 0.89543 1.23485 0.72966 0.86243 0.84852 1.90753 1.48793 1.16898 1.84790 1.84595 1.78626 1.46067 1.21737 1.22913 0.87580 1.06981 0.95922 1.23492 0.96820 0.95456 0.93082 1.60595 1.12367 1.42301 0.99580 1.22806 0.88028 0.99795 0.90928 1.74276 1.17664 1.19249 1.09085 1.73881 1.20224 1.18696 1.03468 1.25336 0.86335 0.99430 0.95676 1.19755 1.00930 0.96339 0.84094 0.88338 1.21588 0.99414 0.98251 0.98361 1.18845 0.95053 0.89160 0.95674 1.21606 1.36272 0.95379 1.03099 0.90461 1.26011 0.95444 0.97641 1.00928 1.70159 1.43191 1.06104 1.38297 0.85383 0.77881 0.78593 0.79091 1.17585 1.20751 1.21132 1.46230 1.11376 1.47861 1.11753 1.22568 0.73575 1.05225 1.06468 1.23472 0.93823 1.03218 0.89408 0.94161 0.87562 0.92092 0.70630 0.85683 0.85898 0.93210 0.84715 0.90648 0.94240 0.91999 1.00195 0.99341 0.93015 0.87880 0.86878 0.88294 0.86609 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.39 113.37 1.18 1.59 16 2 O -0.36 -8.74 10.27 -136.58 -1.40 -10.14 16 3 C 0.10 2.03 0.87 -10.36 -0.01 2.02 16 4 C 0.48 8.70 6.10 71.24 0.43 9.13 16 5 O -0.52 -11.70 16.36 21.97 0.36 -11.34 16 6 O -0.50 -6.16 12.41 -46.65 -0.58 -6.74 16 7 C -0.10 -1.36 6.24 31.98 0.20 -1.16 16 8 C 0.04 0.67 5.50 86.77 0.48 1.14 16 9 N -0.42 -10.59 5.22 -695.87 -3.63 -14.22 16 10 C 0.34 11.42 6.98 260.11 1.82 13.23 16 11 N -0.36 -14.84 10.47 -58.00 -0.61 -15.45 16 12 N -0.32 -14.97 12.18 -49.54 -0.60 -15.57 16 13 C 0.20 8.13 6.58 137.64 0.91 9.04 16 14 C 0.01 0.39 2.70 -11.54 -0.03 0.36 16 15 H 0.10 3.45 6.94 -2.38 -0.02 3.43 16 16 C -0.12 -4.42 8.98 71.98 0.65 -3.77 16 17 C 0.05 2.70 4.43 29.85 0.13 2.83 16 18 C -0.53 -28.42 8.41 25.60 0.22 -28.20 16 19 H 0.08 3.82 7.06 -2.91 -0.02 3.80 16 20 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 21 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 22 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 23 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 26 N -0.48 -15.21 3.21 -538.20 -1.73 -16.94 16 27 C 0.06 1.22 10.80 127.77 1.38 2.60 16 28 C 0.03 0.71 5.95 86.65 0.52 1.23 16 29 H 0.04 1.02 6.50 -2.39 -0.02 1.01 16 30 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.06 1.08 6.47 -2.39 -0.02 1.06 16 32 H 0.43 1.26 9.10 -74.05 -0.67 0.58 16 33 H 0.12 1.23 8.04 -2.39 -0.02 1.21 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.14 7.79 -2.39 -0.02 1.12 16 36 H 0.14 1.46 6.68 -2.39 -0.02 1.44 16 37 H 0.07 2.78 6.95 -2.39 -0.02 2.76 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.54 5.44 -2.39 -0.01 1.53 16 45 H 0.10 1.91 7.23 -2.39 -0.02 1.90 16 46 H 0.12 2.85 6.78 -2.39 -0.02 2.83 16 47 H 0.09 2.73 4.36 -2.38 -0.01 2.72 16 Total: -1.00 -82.07 378.29 2.78 -79.29 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.34 Total: 12.94 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 8.32 Total: 10.33 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.29 Total: -119.53 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.62 Total: -28.22 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -82.07 2.78 -79.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599078570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.615 kcal (2) G-P(sol) polarization free energy of solvation -82.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds