Wall clock time and date at job start Tue Mar 31 2020 22:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.50475 * 2 1 4 4 C 1.53090 * 109.50478 * 239.90892 * 2 1 3 5 5 N 1.47011 * 109.25909 * 296.86941 * 4 2 1 6 6 C 1.38585 * 110.99955 * 177.61175 * 5 4 2 7 7 N 1.31220 * 126.47436 * 0.02565 * 6 5 4 8 8 N 1.28523 * 109.85759 * 180.02562 * 7 6 5 9 9 C 1.30291 * 110.06060 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.35144 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47033 * 0.54725 * 10 9 8 12 12 C 1.52998 * 109.47560 * 120.54820 * 10 9 8 13 13 C 1.50699 * 109.47032 * 240.54803 * 10 9 8 14 14 H 1.08001 * 120.00246 * 359.97438 * 13 10 9 15 15 C 1.37883 * 120.00152 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99357 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00115 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47234 * 90.00175 * 17 15 13 19 19 H 1.48504 * 109.47009 * 210.00114 * 17 15 13 20 20 H 1.48499 * 109.47354 * 329.99960 * 17 15 13 21 21 N 1.36450 * 126.47158 * 180.31360 * 6 5 4 22 22 C 1.46506 * 127.14113 * 0.02562 * 21 6 5 23 23 C 1.47016 * 110.75316 * 301.38703 * 5 4 2 24 24 C 1.53093 * 109.25798 * 58.61616 * 23 5 4 25 25 H 1.09003 * 109.50653 * 63.08555 * 24 23 5 26 26 C 1.50700 * 109.54266 * 183.19500 * 24 23 5 27 27 O 1.20822 * 120.00036 * 114.80360 * 26 24 23 28 28 O 1.34226 * 119.99736 * 294.80382 * 26 24 23 29 29 O 1.43013 * 109.26025 * 303.14923 * 24 23 5 30 30 H 1.08992 * 109.47308 * 180.08975 * 1 2 3 31 31 H 1.09001 * 109.47199 * 300.08956 * 1 2 3 32 32 H 1.09007 * 109.46903 * 60.08845 * 1 2 3 33 33 H 1.09004 * 109.50330 * 176.93787 * 4 2 1 34 34 H 1.09002 * 109.50946 * 56.80849 * 4 2 1 35 35 H 1.09008 * 109.47358 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47491 * 59.99869 * 11 10 9 37 37 H 1.09005 * 109.47263 * 299.99665 * 11 10 9 38 38 H 1.09005 * 109.46966 * 306.05176 * 12 10 9 39 39 H 1.09000 * 109.47256 * 66.04332 * 12 10 9 40 40 H 1.08994 * 109.47812 * 186.04901 * 12 10 9 41 41 H 0.97002 * 119.99264 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.46649 * 268.88380 * 22 21 6 43 43 H 1.09004 * 109.46580 * 28.87547 * 22 21 6 44 44 H 1.08999 * 109.47436 * 148.87833 * 22 21 6 45 45 H 1.09003 * 109.50315 * 178.54902 * 23 5 4 46 46 H 1.08997 * 109.50442 * 298.68056 * 23 5 4 47 47 H 0.96705 * 117.00356 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 1.6118 -2.1288 -1.2045 6 6 2.0105 -2.8059 -2.3461 7 7 2.6820 -2.3047 -3.3559 8 7 2.8802 -3.2136 -4.2427 9 6 2.3509 -4.3392 -3.8549 10 6 2.3668 -5.6417 -4.6126 11 6 3.1228 -5.4561 -5.9298 12 6 3.0636 -6.7129 -3.7713 13 6 0.9518 -6.0719 -4.9019 14 1 0.1238 -5.4633 -4.5698 15 6 0.7143 -7.2426 -5.5905 16 7 1.7227 -7.9834 -5.9954 17 14 -1.0397 -7.7762 -5.9484 18 1 -1.4722 -7.2128 -7.2526 19 1 -1.1045 -9.2588 -6.0037 20 1 -1.9368 -7.2813 -4.8735 21 7 1.7743 -4.1185 -2.6347 22 6 1.0534 -5.0900 -1.8085 23 6 2.1202 -2.7912 0.0055 24 6 1.6082 -2.0470 1.2415 25 1 0.5204 -2.1071 1.2779 26 6 2.1887 -2.6730 2.4833 27 8 2.9474 -2.0415 3.1801 28 8 1.8629 -3.9320 2.8153 29 8 2.0083 -0.6760 1.1661 30 1 -0.3633 -1.0276 0.0016 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 3.1298 -0.6763 -1.2765 34 1 1.6325 -0.2458 -2.1390 35 1 3.1340 -6.3981 -6.4782 36 1 4.1462 -5.1449 -5.7207 37 1 2.6263 -4.6931 -6.5293 38 1 4.0489 -6.3556 -3.4716 39 1 2.4675 -6.9220 -2.8830 40 1 3.1711 -7.6241 -4.3595 41 1 1.5555 -8.8068 -6.4801 42 1 1.7579 -5.6050 -1.1554 43 1 0.3096 -4.5714 -1.2035 44 1 0.5565 -5.8163 -2.4516 45 1 1.7691 -3.8228 0.0304 46 1 3.2100 -2.7770 -0.0024 47 1 2.2606 -4.2907 3.6205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599868794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:11 Heat of formation + Delta-G solvation = -35.376638 kcal Electronic energy + Delta-G solvation = -31402.747685 eV Core-core repulsion = 27202.022516 eV Total energy + Delta-G solvation = -4200.725170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41800 -41.01085 -39.64839 -36.63265 -36.18831 -35.62996 -34.10494 -32.85868 -31.52088 -30.16014 -28.02950 -27.15986 -26.44974 -25.72309 -25.35535 -24.56596 -22.71777 -21.92108 -20.69620 -19.87434 -19.06039 -18.52158 -17.77688 -16.78341 -16.56258 -16.49091 -16.17370 -15.81139 -15.41520 -15.08822 -14.90222 -14.75471 -14.56155 -14.47514 -13.49317 -13.42958 -13.13994 -12.86531 -12.60254 -12.48624 -12.20596 -12.05928 -11.88850 -11.66896 -11.64262 -11.47573 -11.18338 -11.13848 -11.00316 -10.82255 -10.67097 -10.60660 -10.41580 -10.36054 -10.08139 -9.89720 -9.80557 -9.55143 -9.26657 -8.98942 -8.53909 -7.75632 -6.18874 -4.31063 1.73652 2.14771 2.37241 2.71643 3.17899 3.25757 3.27009 3.49164 3.64007 3.86312 4.17909 4.25548 4.47211 4.55577 4.64103 4.78785 4.90528 4.98994 5.06166 5.13612 5.20096 5.36514 5.43380 5.45144 5.49967 5.61289 5.71379 5.77055 5.96480 5.97367 6.01322 6.08199 6.35858 6.55525 6.61353 6.68955 6.72971 6.77238 6.98227 7.12299 7.25152 7.46459 7.50216 7.50912 7.67716 7.84575 7.98678 8.15739 8.65980 9.34927 9.49579 10.82496 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.003378 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.479933 B = 8286.159677 C = 8709.388684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.123 0.877 4 C 0.039 3.961 5 N -0.438 5.438 6 C 0.311 3.689 7 N -0.322 5.322 8 N -0.310 5.310 9 C 0.251 3.749 10 C 0.144 3.856 11 C -0.117 4.117 12 C -0.129 4.129 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.074 3.926 16 N -0.878 5.878 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.473 5.473 22 C 0.073 3.927 23 C 0.024 3.976 24 C 0.106 3.894 25 H 0.113 0.887 26 C 0.489 3.511 27 O -0.489 6.489 28 O -0.509 6.509 29 O -0.354 6.354 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.018 0.982 37 H 0.035 0.965 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.264 0.736 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 7.437 15.375 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.034 3.966 3 H 0.141 0.859 4 C -0.088 4.088 5 N -0.162 5.162 6 C -0.046 4.046 7 N -0.167 5.167 8 N -0.148 5.148 9 C -0.016 4.016 10 C 0.141 3.859 11 C -0.175 4.175 12 C -0.187 4.187 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.129 4.129 16 N -0.515 5.515 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.167 5.167 22 C -0.071 4.071 23 C -0.104 4.104 24 C 0.046 3.954 25 H 0.130 0.870 26 C 0.328 3.672 27 O -0.375 6.375 28 O -0.322 6.322 29 O -0.272 6.272 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.050 0.950 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.079 0.921 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.333 8.706 14.447 17.028 hybrid contribution -0.883 -1.507 0.980 2.002 sum -3.216 7.199 15.426 17.325 Atomic orbital electron populations 1.22357 0.94926 1.03658 1.02886 1.22555 0.94857 0.96306 0.82864 0.85928 1.22774 1.00650 0.85530 0.99891 1.58822 1.56400 1.02958 0.98069 1.22207 1.02312 0.83838 0.96230 1.74424 1.16405 1.25145 1.00682 1.73996 1.22415 0.97039 1.21338 1.26119 0.92840 0.99515 0.83153 1.16942 0.96919 0.81429 0.90571 1.21621 0.95947 1.02449 0.97515 1.21878 0.95833 1.01966 0.99063 1.20850 0.90049 1.06836 1.37666 0.92608 1.24842 0.97225 0.96044 0.94800 1.69815 1.29959 1.14200 1.37499 0.86529 0.84386 0.77730 0.79003 1.20464 1.21024 1.19964 1.45960 1.43896 1.08672 1.18138 1.22233 0.96478 0.92597 0.95746 1.22880 0.99830 0.99642 0.88031 1.21266 1.00531 0.84085 0.89494 0.86998 1.22643 0.78660 0.79740 0.86149 1.90758 1.32571 1.62501 1.51656 1.84473 1.69658 1.29540 1.48561 1.88124 1.75426 1.19904 1.43794 0.91099 0.91849 0.90761 0.91722 0.87552 0.89279 0.96315 0.94562 0.96957 0.95046 0.88789 0.92546 0.91288 0.90316 0.86561 0.87641 0.92097 0.72268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.89 37.16 0.33 -1.19 16 2 C 0.09 0.89 3.92 -26.68 -0.10 0.79 16 3 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.04 0.48 4.43 -3.72 -0.02 0.47 16 5 N -0.44 -6.07 4.14 -174.21 -0.72 -6.79 16 6 C 0.31 5.65 7.22 -318.87 -2.30 3.35 16 7 N -0.32 -6.84 11.31 30.32 0.34 -6.50 16 8 N -0.31 -7.30 11.50 32.99 0.38 -6.92 16 9 C 0.25 5.62 6.28 -154.02 -0.97 4.66 16 10 C 0.14 3.35 0.53 -156.82 -0.08 3.27 16 11 C -0.12 -2.81 7.75 37.16 0.29 -2.52 16 12 C -0.13 -2.80 7.98 37.16 0.30 -2.51 16 13 C -0.52 -12.60 6.48 -34.44 -0.22 -12.82 16 14 H 0.06 1.39 7.41 -52.49 -0.39 1.01 16 15 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 16 N -0.88 -21.98 9.42 55.43 0.52 -21.46 16 17 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 N -0.47 -8.93 3.21 -121.46 -0.39 -9.32 16 22 C 0.07 1.09 7.93 59.85 0.47 1.56 16 23 C 0.02 0.29 4.72 -3.71 -0.02 0.28 16 24 C 0.11 1.11 2.93 -27.84 -0.08 1.03 16 25 H 0.11 0.98 6.49 -51.93 -0.34 0.64 16 26 C 0.49 5.20 7.66 36.01 0.28 5.48 16 27 O -0.49 -6.85 17.27 -25.45 -0.44 -7.29 16 28 O -0.51 -3.77 13.42 -39.25 -0.53 -4.29 16 29 O -0.35 -4.17 9.82 -55.11 -0.54 -4.71 16 30 H 0.07 0.65 6.13 -51.93 -0.32 0.33 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.35 8.05 -51.93 -0.42 0.93 16 35 H 0.09 2.23 6.07 -51.92 -0.32 1.91 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.03 0.62 6.45 -51.93 -0.33 0.29 16 40 H 0.09 2.21 6.26 -51.93 -0.33 1.88 16 41 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 42 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 43 H 0.08 0.97 7.59 -51.93 -0.39 0.57 16 44 H 0.12 1.96 5.97 -51.93 -0.31 1.65 16 45 H 0.11 1.17 5.41 -51.93 -0.28 0.89 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.42 1.29 9.10 45.56 0.41 1.70 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -31.56 368.88 -8.98 -40.54 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.92 Total: 3.26 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.22 Total: 3.56 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.13 Total: -50.99 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.51 Total: -16.29 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.56 -8.98 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599868794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.162 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds