Wall clock time and date at job start Tue Mar 31 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.50475 * 2 1 4 4 C 1.53090 * 109.50478 * 239.90892 * 2 1 3 5 5 N 1.47011 * 109.25909 * 296.86941 * 4 2 1 6 6 C 1.38585 * 110.99955 * 177.61175 * 5 4 2 7 7 N 1.31220 * 126.47436 * 0.02565 * 6 5 4 8 8 N 1.28523 * 109.85759 * 180.02562 * 7 6 5 9 9 C 1.30291 * 110.06060 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.35144 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47033 * 0.54725 * 10 9 8 12 12 C 1.52998 * 109.47560 * 120.54820 * 10 9 8 13 13 C 1.50699 * 109.47032 * 240.54803 * 10 9 8 14 14 H 1.08001 * 120.00246 * 359.97438 * 13 10 9 15 15 C 1.37883 * 120.00152 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99357 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00115 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47234 * 90.00175 * 17 15 13 19 19 H 1.48504 * 109.47009 * 210.00114 * 17 15 13 20 20 H 1.48499 * 109.47354 * 329.99960 * 17 15 13 21 21 N 1.36450 * 126.47158 * 180.31360 * 6 5 4 22 22 C 1.46506 * 127.14113 * 0.02562 * 21 6 5 23 23 C 1.47016 * 110.75316 * 301.38703 * 5 4 2 24 24 C 1.53093 * 109.25798 * 58.61616 * 23 5 4 25 25 H 1.09003 * 109.50653 * 63.08555 * 24 23 5 26 26 C 1.50700 * 109.54266 * 183.19500 * 24 23 5 27 27 O 1.20822 * 120.00036 * 114.80360 * 26 24 23 28 28 O 1.34226 * 119.99736 * 294.80382 * 26 24 23 29 29 O 1.43013 * 109.26025 * 303.14923 * 24 23 5 30 30 H 1.08992 * 109.47308 * 180.08975 * 1 2 3 31 31 H 1.09001 * 109.47199 * 300.08956 * 1 2 3 32 32 H 1.09007 * 109.46903 * 60.08845 * 1 2 3 33 33 H 1.09004 * 109.50330 * 176.93787 * 4 2 1 34 34 H 1.09002 * 109.50946 * 56.80849 * 4 2 1 35 35 H 1.09008 * 109.47358 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47491 * 59.99869 * 11 10 9 37 37 H 1.09005 * 109.47263 * 299.99665 * 11 10 9 38 38 H 1.09005 * 109.46966 * 306.05176 * 12 10 9 39 39 H 1.09000 * 109.47256 * 66.04332 * 12 10 9 40 40 H 1.08994 * 109.47812 * 186.04901 * 12 10 9 41 41 H 0.97002 * 119.99264 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.46649 * 268.88380 * 22 21 6 43 43 H 1.09004 * 109.46580 * 28.87547 * 22 21 6 44 44 H 1.08999 * 109.47436 * 148.87833 * 22 21 6 45 45 H 1.09003 * 109.50315 * 178.54902 * 23 5 4 46 46 H 1.08997 * 109.50442 * 298.68056 * 23 5 4 47 47 H 0.96705 * 117.00356 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 1.6118 -2.1288 -1.2045 6 6 2.0105 -2.8059 -2.3461 7 7 2.6820 -2.3047 -3.3559 8 7 2.8802 -3.2136 -4.2427 9 6 2.3509 -4.3392 -3.8549 10 6 2.3668 -5.6417 -4.6126 11 6 3.1228 -5.4561 -5.9298 12 6 3.0636 -6.7129 -3.7713 13 6 0.9518 -6.0719 -4.9019 14 1 0.1238 -5.4633 -4.5698 15 6 0.7143 -7.2426 -5.5905 16 7 1.7227 -7.9834 -5.9954 17 14 -1.0397 -7.7762 -5.9484 18 1 -1.4722 -7.2128 -7.2526 19 1 -1.1045 -9.2588 -6.0037 20 1 -1.9368 -7.2813 -4.8735 21 7 1.7743 -4.1185 -2.6347 22 6 1.0534 -5.0900 -1.8085 23 6 2.1202 -2.7912 0.0055 24 6 1.6082 -2.0470 1.2415 25 1 0.5204 -2.1071 1.2779 26 6 2.1887 -2.6730 2.4833 27 8 2.9474 -2.0415 3.1801 28 8 1.8629 -3.9320 2.8153 29 8 2.0083 -0.6760 1.1661 30 1 -0.3633 -1.0276 0.0016 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 3.1298 -0.6763 -1.2765 34 1 1.6325 -0.2458 -2.1390 35 1 3.1340 -6.3981 -6.4782 36 1 4.1462 -5.1449 -5.7207 37 1 2.6263 -4.6931 -6.5293 38 1 4.0489 -6.3556 -3.4716 39 1 2.4675 -6.9220 -2.8830 40 1 3.1711 -7.6241 -4.3595 41 1 1.5555 -8.8068 -6.4801 42 1 1.7579 -5.6050 -1.1554 43 1 0.3096 -4.5714 -1.2035 44 1 0.5565 -5.8163 -2.4516 45 1 1.7691 -3.8228 0.0304 46 1 3.2100 -2.7770 -0.0024 47 1 2.2606 -4.2907 3.6205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599868794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:10 Heat of formation + Delta-G solvation = -54.342501 kcal Electronic energy + Delta-G solvation = -31403.570107 eV Core-core repulsion = 27202.022516 eV Total energy + Delta-G solvation = -4201.547591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.93531 -41.89432 -40.53388 -37.79959 -37.33364 -36.95235 -35.54571 -33.73625 -33.32370 -31.21658 -29.41340 -28.45696 -27.67726 -27.35619 -27.18755 -25.59627 -23.79707 -23.34925 -21.94244 -20.97757 -20.51160 -19.36818 -18.80716 -18.37182 -17.65003 -17.46016 -17.24184 -17.16889 -16.80338 -16.54853 -16.02759 -15.83276 -15.50763 -15.49671 -15.09862 -14.74997 -14.26919 -14.15408 -13.90821 -13.50857 -13.39955 -13.30326 -13.01203 -12.92483 -12.89248 -12.69780 -12.66586 -12.58702 -12.49137 -12.33665 -12.22892 -11.98989 -11.89067 -11.70934 -11.61889 -11.37909 -11.17493 -10.98164 -10.86218 -10.53535 -10.41400 -9.26230 -8.05567 -6.22984 0.81401 1.00776 1.33833 1.45158 1.45929 1.50689 1.56638 1.94298 2.44005 2.48312 2.91771 3.18942 3.26102 3.58716 3.64999 3.72880 3.86897 3.97901 3.99206 4.07512 4.22850 4.23631 4.33324 4.35948 4.45116 4.54095 4.67834 4.72104 4.76362 4.86756 4.92755 4.96316 5.03129 5.11606 5.15688 5.31878 5.36240 5.42706 5.45701 5.50758 5.58035 5.66870 5.83850 5.97502 6.06287 6.24472 6.28608 6.75904 6.86104 7.44816 7.90047 8.94775 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.003378 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.479933 B = 8286.159677 C = 8709.388684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 H 0.144 0.856 4 C 0.038 3.962 5 N -0.428 5.428 6 C 0.332 3.668 7 N -0.355 5.355 8 N -0.343 5.343 9 C 0.231 3.769 10 C 0.142 3.858 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.520 4.520 14 H 0.047 0.953 15 C 0.039 3.961 16 N -0.896 5.896 17 Si 0.949 3.051 18 H -0.287 1.287 19 H -0.281 1.281 20 H -0.267 1.267 21 N -0.472 5.472 22 C 0.066 3.934 23 C 0.027 3.973 24 C 0.108 3.892 25 H 0.138 0.862 26 C 0.498 3.502 27 O -0.528 6.528 28 O -0.497 6.497 29 O -0.370 6.370 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.015 0.985 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.265 0.735 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.045 0.955 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 7.475 17.652 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 H 0.161 0.839 4 C -0.089 4.089 5 N -0.152 5.152 6 C -0.026 4.026 7 N -0.199 5.199 8 N -0.181 5.181 9 C -0.038 4.038 10 C 0.139 3.861 11 C -0.165 4.165 12 C -0.175 4.175 13 C -0.559 4.559 14 H 0.065 0.935 15 C -0.163 4.163 16 N -0.533 5.533 17 Si 0.776 3.224 18 H -0.214 1.214 19 H -0.206 1.206 20 H -0.191 1.191 21 N -0.165 5.165 22 C -0.075 4.075 23 C -0.101 4.101 24 C 0.048 3.952 25 H 0.155 0.845 26 C 0.339 3.661 27 O -0.417 6.417 28 O -0.312 6.312 29 O -0.289 6.289 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.137 0.863 46 H 0.063 0.937 47 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -4.076 8.718 16.756 19.323 hybrid contribution -0.354 -1.489 0.336 1.567 sum -4.430 7.229 17.093 19.080 Atomic orbital electron populations 1.22326 0.93461 1.03627 1.03908 1.22675 0.95900 0.96555 0.80796 0.83887 1.22873 0.99763 0.84829 1.01447 1.58964 1.55663 1.03424 0.97187 1.22607 0.99892 0.83504 0.96572 1.74331 1.18526 1.25323 1.01718 1.73891 1.23519 0.97886 1.22789 1.25799 0.94323 0.98943 0.84737 1.16856 0.96396 0.82464 0.90414 1.21484 0.96039 1.00926 0.98024 1.21706 0.96135 1.00547 0.99076 1.20912 0.90339 1.06797 1.37858 0.93462 1.25406 1.00070 0.96096 0.94683 1.69910 1.31263 1.14371 1.37766 0.85692 0.80982 0.77367 0.78375 1.21384 1.20599 1.19125 1.46066 1.43580 1.09401 1.17453 1.22495 0.97455 0.92144 0.95443 1.22926 0.98966 1.00547 0.87616 1.21359 1.01806 0.83408 0.88582 0.84521 1.22602 0.77667 0.80209 0.85656 1.90755 1.34309 1.63653 1.52964 1.84430 1.69250 1.27782 1.49735 1.88127 1.75981 1.20504 1.44279 0.91600 0.90406 0.90195 0.93392 0.88035 0.90593 0.96189 0.96286 0.96611 0.93467 0.90608 0.92538 0.88943 0.87159 0.88272 0.86258 0.93696 0.69911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.89 71.98 0.64 -1.78 16 2 C 0.10 1.68 3.92 30.63 0.12 1.80 16 3 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.04 0.90 4.43 86.31 0.38 1.28 16 5 N -0.43 -11.08 4.14 -705.08 -2.92 -14.00 16 6 C 0.33 11.76 7.22 260.11 1.88 13.64 16 7 N -0.35 -15.19 11.31 -58.00 -0.66 -15.85 16 8 N -0.34 -16.45 11.50 -49.54 -0.57 -17.02 16 9 C 0.23 10.38 6.28 137.64 0.86 11.24 16 10 C 0.14 6.63 0.53 -53.68 -0.03 6.60 16 11 C -0.11 -5.24 7.75 71.98 0.56 -4.68 16 12 C -0.12 -5.02 7.98 71.98 0.57 -4.44 16 13 C -0.52 -25.42 6.48 25.60 0.17 -25.26 16 14 H 0.05 2.35 7.41 -2.91 -0.02 2.33 16 15 C 0.04 1.89 5.15 84.66 0.44 2.33 16 16 N -0.90 -44.99 9.42 21.45 0.20 -44.79 16 17 Si 0.95 39.30 29.54 68.60 2.03 41.33 16 18 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 N -0.47 -17.26 3.21 -538.17 -1.73 -18.99 16 22 C 0.07 1.81 7.93 127.77 1.01 2.83 16 23 C 0.03 0.59 4.72 86.31 0.41 1.00 16 24 C 0.11 1.97 2.93 29.88 0.09 2.06 16 25 H 0.14 1.85 6.49 -2.39 -0.02 1.83 16 26 C 0.50 9.34 7.66 71.24 0.55 9.89 16 27 O -0.53 -13.94 17.27 28.39 0.49 -13.45 16 28 O -0.50 -5.68 13.42 -51.38 -0.69 -6.37 16 29 O -0.37 -7.89 9.82 -129.98 -1.28 -9.16 16 30 H 0.07 0.98 6.13 -2.39 -0.01 0.96 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.10 2.49 8.05 -2.39 -0.02 2.47 16 35 H 0.08 3.91 6.07 -2.38 -0.01 3.89 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.05 1.83 6.45 -2.39 -0.02 1.81 16 40 H 0.08 3.56 6.26 -2.39 -0.01 3.55 16 41 H 0.26 12.78 8.31 -92.71 -0.77 12.01 16 42 H 0.09 2.11 7.71 -2.39 -0.02 2.09 16 43 H 0.11 2.30 7.59 -2.38 -0.02 2.28 16 44 H 0.10 3.16 5.97 -2.39 -0.01 3.14 16 45 H 0.12 2.24 5.41 -2.39 -0.01 2.23 16 46 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.44 1.29 9.10 -74.05 -0.67 0.61 16 Total: -1.00 -69.00 368.88 2.86 -66.14 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.34 Total: 15.67 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.64 Total: 16.49 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -5.67 Total: -110.65 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.48 Total: -28.98 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.00 2.86 -66.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599868794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.798 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds