Wall clock time and date at job start Tue Mar 31 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 14 14 H 1.08998 * 109.46716 * 174.99405 * 13 2 1 15 15 C 1.52991 * 109.47459 * 294.99745 * 13 2 1 16 16 N 1.46506 * 109.46745 * 55.00261 * 13 2 1 17 17 C 1.34783 * 119.99632 * 154.99832 * 16 13 2 18 18 O 1.21281 * 120.00216 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99586 * 179.97438 * 17 16 13 20 20 N 1.46503 * 109.47028 * 179.97438 * 19 17 16 21 21 C 1.34771 * 119.99891 * 179.97438 * 20 19 17 22 22 O 1.21581 * 120.00358 * 0.02562 * 21 20 19 23 23 N 1.34781 * 119.99718 * 179.97438 * 21 20 19 24 24 C 1.46502 * 119.99901 * 179.97438 * 23 21 20 25 25 C 1.50696 * 109.47136 * 180.02562 * 24 23 21 26 26 C 1.34516 * 125.79174 * 90.00105 * 25 24 23 27 27 C 1.41381 * 106.84273 * 180.02562 * 26 25 24 28 28 C 1.34518 * 106.83983 * 359.97438 * 27 26 25 29 29 O 1.34306 * 125.78673 * 269.69615 * 25 24 23 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 34 34 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 35 35 H 1.08993 * 109.47299 * 300.00398 * 15 13 2 36 36 H 1.09001 * 109.46982 * 60.00347 * 15 13 2 37 37 H 1.09003 * 109.47094 * 179.97438 * 15 13 2 38 38 H 0.96997 * 120.00008 * 334.99823 * 16 13 2 39 39 H 1.08994 * 109.47357 * 300.00314 * 19 17 16 40 40 H 1.09007 * 109.46806 * 60.00550 * 19 17 16 41 41 H 0.97004 * 119.99516 * 0.02562 * 20 19 17 42 42 H 0.96997 * 120.00412 * 0.02562 * 23 21 20 43 43 H 1.08998 * 109.47634 * 300.00533 * 24 23 21 44 44 H 1.08996 * 109.46777 * 60.00303 * 24 23 21 45 45 H 1.07996 * 126.57541 * 0.03956 * 26 25 24 46 46 H 1.07997 * 126.58210 * 179.97438 * 27 26 25 47 47 H 1.08006 * 125.78941 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6442 -1.2951 15 6 1.6354 -2.1954 -1.1880 16 7 1.4559 -0.1035 -2.4423 17 6 2.0914 -0.1936 -3.6275 18 8 3.1470 -0.7856 -3.7062 19 6 1.4902 0.4412 -4.8549 20 7 2.3658 0.2050 -6.0055 21 6 2.0278 0.6839 -7.2191 22 8 0.9965 1.3125 -7.3589 23 7 2.8335 0.4670 -8.2775 24 6 2.4659 0.9872 -9.5968 25 6 3.5261 0.6097 -10.5989 26 6 3.5453 -0.5138 -11.3384 27 6 4.7113 -0.4593 -12.1362 28 6 5.3346 0.6946 -11.8369 29 8 4.6093 1.3406 -10.9093 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8279 -2.4240 2.6156 35 1 2.0699 -2.6549 -0.3003 36 1 0.5491 -2.2724 -1.1421 37 1 1.9984 -2.7091 -2.0782 38 1 0.6118 0.3702 -2.3793 39 1 0.5106 0.0039 -5.0475 40 1 1.3840 1.5141 -4.6940 41 1 3.1884 -0.2969 -5.8940 42 1 3.6565 -0.0342 -8.1659 43 1 1.5100 0.5614 -9.9019 44 1 2.3811 2.0728 -9.5485 45 1 2.8108 -1.3054 -11.3254 46 1 5.0387 -1.2015 -12.8491 47 1 6.2591 1.0444 -12.2721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674773313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:29 Heat of formation + Delta-G solvation = -31.434836 kcal Electronic energy + Delta-G solvation = -28066.372871 eV Core-core repulsion = 23865.818631 eV Total energy + Delta-G solvation = -4200.554240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.08124 -40.54158 -39.65959 -37.22809 -35.56201 -34.62910 -34.21879 -33.45721 -32.08148 -30.97365 -29.64838 -28.13465 -27.80147 -25.84742 -24.30892 -23.20627 -22.26269 -21.31773 -21.10572 -20.71249 -19.49331 -19.20428 -18.01417 -17.54233 -16.93650 -16.75389 -16.37968 -16.27914 -15.65412 -15.35629 -15.08448 -14.75421 -14.54980 -14.33809 -14.26776 -13.77735 -13.64937 -13.33741 -13.31319 -13.14696 -13.07319 -12.97560 -12.53643 -12.36429 -12.02118 -11.80750 -11.58229 -10.89144 -10.69830 -10.65164 -10.48078 -10.42881 -10.27542 -10.04419 -9.95056 -9.71180 -9.28068 -9.23379 -9.09957 -9.00176 -8.96183 -7.11917 -6.14562 -3.15819 1.05541 1.99478 2.31130 2.48369 2.54255 2.87652 3.18591 3.49967 3.53118 3.70655 3.96580 4.06867 4.51299 4.54054 4.54648 4.64790 4.88460 5.03309 5.10461 5.13501 5.20454 5.29211 5.34173 5.42426 5.45068 5.55227 5.59928 5.64116 5.89881 5.92869 5.97167 5.98585 6.04034 6.13013 6.24723 6.28681 6.45761 6.51408 6.58570 6.60868 6.72084 6.94627 7.43846 7.64134 7.75977 8.10202 8.22856 8.70729 9.16137 10.02369 10.16006 11.33365 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.001553 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.976981 B =18026.757919 C =18328.391474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.173 3.827 3 H 0.054 0.946 4 N -0.730 5.730 5 C -0.334 4.334 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.080 2.920 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.135 3.865 14 H 0.089 0.911 15 C -0.159 4.159 16 N -0.712 5.712 17 C 0.506 3.494 18 O -0.541 6.541 19 C 0.119 3.881 20 N -0.731 5.731 21 C 0.711 3.289 22 O -0.591 6.591 23 N -0.745 5.745 24 C 0.224 3.776 25 C -0.039 4.039 26 C -0.182 4.182 27 C -0.219 4.219 28 C -0.028 4.028 29 O -0.171 6.171 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.369 0.631 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.402 0.598 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.409 0.591 42 H 0.401 0.599 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 3.930 -30.795 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.062 3.938 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.464 4.464 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.587 5.587 9 Si 0.911 3.089 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.222 1.222 13 C 0.031 3.969 14 H 0.107 0.893 15 C -0.217 4.217 16 N -0.365 5.365 17 C 0.291 3.709 18 O -0.419 6.419 19 C -0.009 4.009 20 N -0.390 5.390 21 C 0.411 3.589 22 O -0.469 6.469 23 N -0.402 5.402 24 C 0.100 3.900 25 C -0.089 4.089 26 C -0.202 4.202 27 C -0.238 4.238 28 C -0.097 4.097 29 O -0.067 6.067 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.238 0.762 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.247 0.753 42 H 0.236 0.764 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.169 0.831 46 H 0.169 0.831 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.147 4.466 -29.157 29.498 hybrid contribution -0.014 -0.587 -1.713 1.811 sum -0.160 3.880 -30.870 31.114 Atomic orbital electron populations 1.22524 0.99119 1.01245 0.99990 1.20302 0.92261 0.95598 0.85618 0.92849 1.42445 1.79372 1.09915 1.05779 1.20026 1.42248 0.95225 0.88937 0.91669 1.25781 0.99175 0.97462 1.01642 1.70893 1.51179 1.08205 1.28378 0.83238 0.75889 0.74291 0.75492 1.21019 1.22247 1.22248 1.21384 0.99063 0.92867 0.83636 0.89335 1.22134 1.01696 0.95741 1.02139 1.46140 1.25849 1.56352 1.08123 1.20464 0.85139 0.80366 0.84902 1.90699 1.22566 1.43269 1.85317 1.20916 0.94258 1.02186 0.83537 1.44705 1.27523 1.60398 1.06354 1.15690 0.83306 0.79845 0.80084 1.90949 1.25608 1.45855 1.84485 1.45085 1.26549 1.61200 1.07343 1.19378 0.92375 1.00583 0.77662 1.22296 0.90854 0.93184 1.02586 1.21751 1.00329 0.98970 0.99138 1.21911 0.97260 0.99919 1.04683 1.24180 0.98287 0.93671 0.93522 1.84062 1.30283 1.44506 1.47813 0.92244 0.94631 0.92899 0.79536 0.93418 0.90955 0.92305 0.92900 0.76199 0.88367 0.88327 0.75340 0.76439 0.88246 0.89650 0.83060 0.83144 0.77816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.01 37.16 0.33 -2.39 16 2 C 0.17 3.22 2.93 -67.93 -0.20 3.02 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.73 -17.45 5.03 -53.43 -0.27 -17.72 16 5 C -0.33 -9.10 9.93 -15.06 -0.15 -9.25 16 6 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 7 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 8 N -0.94 -28.64 13.70 55.49 0.76 -27.88 16 9 Si 1.08 25.52 29.92 -169.99 -5.09 20.44 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.30 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.14 2.18 2.62 -67.93 -0.18 2.01 16 14 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 15 C -0.16 -2.51 9.00 37.15 0.33 -2.18 16 16 N -0.71 -8.86 4.99 -53.81 -0.27 -9.13 16 17 C 0.51 6.38 7.86 -10.98 -0.09 6.29 16 18 O -0.54 -8.60 15.33 5.56 0.09 -8.51 16 19 C 0.12 1.19 6.15 -5.19 -0.03 1.16 16 20 N -0.73 -7.43 5.53 -66.41 -0.37 -7.79 16 21 C 0.71 7.74 8.57 -86.92 -0.74 7.00 16 22 O -0.59 -8.31 16.34 5.29 0.09 -8.23 16 23 N -0.74 -6.02 5.55 -66.42 -0.37 -6.39 16 24 C 0.22 1.64 6.20 -5.19 -0.03 1.61 16 25 C -0.04 -0.28 6.69 -35.63 -0.24 -0.52 16 26 C -0.18 -1.19 10.81 -39.70 -0.43 -1.62 16 27 C -0.22 -1.27 10.91 -39.70 -0.43 -1.71 16 28 C -0.03 -0.16 12.09 29.42 0.36 0.20 16 29 O -0.17 -1.35 10.65 5.69 0.06 -1.29 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.44 6.29 -51.93 -0.33 0.11 16 32 H 0.05 0.86 6.57 -51.93 -0.34 0.52 16 33 H 0.37 9.09 4.60 -40.82 -0.19 8.90 16 34 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 35 H 0.07 1.27 6.29 -51.93 -0.33 0.95 16 36 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 4.03 6.58 -40.82 -0.27 3.76 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.41 4.00 7.45 -40.82 -0.30 3.70 16 42 H 0.40 2.63 8.48 -40.82 -0.35 2.28 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 46 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.21 0.42 8.06 -52.48 -0.42 0.00 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -35.41 392.74 -7.58 -42.99 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -6.54 Total: 15.29 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.59 Total: 2.30 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -0.51 Total: -68.91 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.23 Total: -18.03 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.41 -7.58 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674773313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.560 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds