Wall clock time and date at job start Tue Mar 31 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 14 14 H 1.08998 * 109.46716 * 174.99405 * 13 2 1 15 15 C 1.52991 * 109.47459 * 294.99745 * 13 2 1 16 16 N 1.46506 * 109.46745 * 55.00261 * 13 2 1 17 17 C 1.34783 * 119.99632 * 154.99832 * 16 13 2 18 18 O 1.21281 * 120.00216 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99586 * 179.97438 * 17 16 13 20 20 N 1.46503 * 109.47028 * 179.97438 * 19 17 16 21 21 C 1.34771 * 119.99891 * 179.97438 * 20 19 17 22 22 O 1.21581 * 120.00358 * 0.02562 * 21 20 19 23 23 N 1.34781 * 119.99718 * 179.97438 * 21 20 19 24 24 C 1.46502 * 119.99901 * 179.97438 * 23 21 20 25 25 C 1.50696 * 109.47136 * 180.02562 * 24 23 21 26 26 C 1.34516 * 125.79174 * 90.00105 * 25 24 23 27 27 C 1.41381 * 106.84273 * 180.02562 * 26 25 24 28 28 C 1.34518 * 106.83983 * 359.97438 * 27 26 25 29 29 O 1.34306 * 125.78673 * 269.69615 * 25 24 23 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 34 34 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 35 35 H 1.08993 * 109.47299 * 300.00398 * 15 13 2 36 36 H 1.09001 * 109.46982 * 60.00347 * 15 13 2 37 37 H 1.09003 * 109.47094 * 179.97438 * 15 13 2 38 38 H 0.96997 * 120.00008 * 334.99823 * 16 13 2 39 39 H 1.08994 * 109.47357 * 300.00314 * 19 17 16 40 40 H 1.09007 * 109.46806 * 60.00550 * 19 17 16 41 41 H 0.97004 * 119.99516 * 0.02562 * 20 19 17 42 42 H 0.96997 * 120.00412 * 0.02562 * 23 21 20 43 43 H 1.08998 * 109.47634 * 300.00533 * 24 23 21 44 44 H 1.08996 * 109.46777 * 60.00303 * 24 23 21 45 45 H 1.07996 * 126.57541 * 0.03956 * 26 25 24 46 46 H 1.07997 * 126.58210 * 179.97438 * 27 26 25 47 47 H 1.08006 * 125.78941 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6442 -1.2951 15 6 1.6354 -2.1954 -1.1880 16 7 1.4559 -0.1035 -2.4423 17 6 2.0914 -0.1936 -3.6275 18 8 3.1470 -0.7856 -3.7062 19 6 1.4902 0.4412 -4.8549 20 7 2.3658 0.2050 -6.0055 21 6 2.0278 0.6839 -7.2191 22 8 0.9965 1.3125 -7.3589 23 7 2.8335 0.4670 -8.2775 24 6 2.4659 0.9872 -9.5968 25 6 3.5261 0.6097 -10.5989 26 6 3.5453 -0.5138 -11.3384 27 6 4.7113 -0.4593 -12.1362 28 6 5.3346 0.6946 -11.8369 29 8 4.6093 1.3406 -10.9093 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8279 -2.4240 2.6156 35 1 2.0699 -2.6549 -0.3003 36 1 0.5491 -2.2724 -1.1421 37 1 1.9984 -2.7091 -2.0782 38 1 0.6118 0.3702 -2.3793 39 1 0.5106 0.0039 -5.0475 40 1 1.3840 1.5141 -4.6940 41 1 3.1884 -0.2969 -5.8940 42 1 3.6565 -0.0342 -8.1659 43 1 1.5100 0.5614 -9.9019 44 1 2.3811 2.0728 -9.5485 45 1 2.8108 -1.3054 -11.3254 46 1 5.0387 -1.2015 -12.8491 47 1 6.2591 1.0444 -12.2721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674773313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:29 Heat of formation + Delta-G solvation = -59.163612 kcal Electronic energy + Delta-G solvation = -28067.575281 eV Core-core repulsion = 23865.818631 eV Total energy + Delta-G solvation = -4201.756650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55836 -41.49624 -40.68379 -38.65151 -36.29211 -35.93901 -35.46296 -33.94250 -33.69309 -31.68359 -31.00248 -29.73623 -28.68282 -26.50825 -26.00590 -24.88706 -22.72451 -22.20315 -21.80702 -21.56840 -20.85586 -20.03146 -19.52600 -18.65113 -17.79550 -17.68448 -17.23540 -17.08203 -16.74823 -16.35724 -16.30030 -15.90421 -15.66099 -15.57437 -15.37717 -15.02520 -14.70636 -14.53705 -14.27293 -14.05939 -13.78250 -13.69742 -13.54847 -13.39413 -13.26310 -13.08635 -12.96536 -12.64963 -12.34820 -12.02854 -11.86080 -11.77873 -11.60118 -11.28430 -11.09291 -10.93976 -10.90900 -10.54416 -10.22209 -9.94311 -9.56600 -9.13589 -8.36989 -5.31651 0.54833 1.41329 1.45623 1.59811 1.69230 1.71213 1.85432 1.99003 2.04329 2.22767 2.73477 3.24260 3.41713 3.54478 3.60716 3.78607 3.82910 3.98317 4.09371 4.13538 4.23330 4.33434 4.35026 4.38056 4.50570 4.52365 4.60762 4.78942 4.87549 4.88458 4.92272 4.98862 5.11054 5.12697 5.17586 5.22814 5.27832 5.40149 5.54755 5.55702 5.62827 5.80708 6.14533 6.41818 6.51464 6.88592 7.07565 7.12074 7.41316 8.00924 8.10934 9.14648 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.001553 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.976981 B =18026.757919 C =18328.391474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 H 0.046 0.954 4 N -0.745 5.745 5 C -0.328 4.328 6 H 0.068 0.932 7 C -0.104 4.104 8 N -0.976 5.976 9 Si 1.126 2.874 10 H -0.295 1.295 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.151 3.849 14 H 0.060 0.940 15 C -0.151 4.151 16 N -0.700 5.700 17 C 0.511 3.489 18 O -0.575 6.575 19 C 0.127 3.873 20 N -0.730 5.730 21 C 0.711 3.289 22 O -0.623 6.623 23 N -0.734 5.734 24 C 0.226 3.774 25 C -0.055 4.055 26 C -0.184 4.184 27 C -0.231 4.231 28 C -0.029 4.029 29 O -0.191 6.191 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.363 0.637 34 H 0.243 0.757 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.417 0.583 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.411 0.589 42 H 0.409 0.591 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.162 0.838 46 H 0.169 0.831 47 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 4.881 -32.463 32.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 H 0.064 0.936 4 N -0.390 5.390 5 C -0.460 4.460 6 H 0.086 0.914 7 C -0.296 4.296 8 N -0.624 5.624 9 Si 0.952 3.048 10 H -0.222 1.222 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.045 3.955 14 H 0.078 0.922 15 C -0.209 4.209 16 N -0.354 5.354 17 C 0.298 3.702 18 O -0.454 6.454 19 C -0.001 4.001 20 N -0.388 5.388 21 C 0.410 3.590 22 O -0.504 6.504 23 N -0.391 5.391 24 C 0.103 3.897 25 C -0.105 4.105 26 C -0.204 4.204 27 C -0.250 4.250 28 C -0.096 4.096 29 O -0.087 6.087 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.197 0.803 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.256 0.744 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.249 0.751 42 H 0.245 0.755 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.180 0.820 46 H 0.186 0.814 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.896 5.449 -30.891 31.381 hybrid contribution 0.246 -0.858 -1.350 1.619 sum -0.650 4.591 -32.242 32.574 Atomic orbital electron populations 1.22355 0.96478 1.01652 1.01321 1.20492 0.93914 0.94807 0.84806 0.93630 1.42645 1.79851 1.09828 1.06641 1.20368 1.40099 0.95435 0.90057 0.91369 1.27128 0.99692 0.97592 1.05145 1.70997 1.53992 1.09465 1.27984 0.82636 0.76905 0.73454 0.71848 1.22170 1.20611 1.20267 1.20887 0.97469 0.93085 0.84070 0.92218 1.22041 1.02461 0.95222 1.01171 1.45873 1.26314 1.56233 1.06994 1.20874 0.84454 0.79559 0.85343 1.90696 1.24164 1.44753 1.85807 1.20929 0.94512 1.02715 0.81961 1.44696 1.27603 1.60259 1.06280 1.15769 0.83130 0.79564 0.80497 1.90926 1.27075 1.47410 1.85000 1.45040 1.26341 1.60593 1.07086 1.19366 0.92883 1.00125 0.77333 1.22246 0.91192 0.93718 1.03299 1.22016 1.00775 0.98863 0.98771 1.22231 0.97094 1.00593 1.05102 1.24888 0.98790 0.93437 0.92496 1.84048 1.30740 1.45274 1.48652 0.94181 0.90042 0.92942 0.80302 0.94615 0.93307 0.90750 0.92456 0.74380 0.86581 0.86993 0.75100 0.75506 0.87689 0.90400 0.82001 0.81357 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 9.01 71.98 0.65 -4.14 16 2 C 0.17 6.16 2.93 44.99 0.13 6.29 16 3 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 4 N -0.75 -36.00 5.03 -322.94 -1.62 -37.62 16 5 C -0.33 -17.97 9.93 84.03 0.83 -17.13 16 6 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 7 C -0.10 -5.98 5.50 84.86 0.47 -5.52 16 8 N -0.98 -60.72 13.70 21.65 0.30 -60.42 16 9 Si 1.13 51.48 29.92 68.60 2.05 53.53 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.15 4.77 2.62 44.99 0.12 4.89 16 14 H 0.06 2.26 7.58 -2.39 -0.02 2.25 16 15 C -0.15 -4.69 9.00 71.98 0.65 -4.04 16 16 N -0.70 -15.97 4.99 -442.53 -2.21 -18.18 16 17 C 0.51 11.98 7.86 87.66 0.69 12.67 16 18 O -0.57 -17.83 15.33 -3.03 -0.05 -17.88 16 19 C 0.13 2.24 6.15 85.63 0.53 2.76 16 20 N -0.73 -13.73 5.53 -482.30 -2.67 -16.40 16 21 C 0.71 14.62 8.57 179.05 1.53 16.15 16 22 O -0.62 -16.80 16.34 -3.97 -0.06 -16.87 16 23 N -0.73 -11.21 5.55 -482.31 -2.68 -13.89 16 24 C 0.23 3.20 6.20 85.63 0.53 3.73 16 25 C -0.05 -0.75 6.69 24.83 0.17 -0.59 16 26 C -0.18 -2.19 10.81 22.19 0.24 -1.95 16 27 C -0.23 -2.31 10.91 22.19 0.24 -2.07 16 28 C -0.03 -0.27 12.09 66.97 0.81 0.54 16 29 O -0.19 -2.85 10.65 -2.57 -0.03 -2.88 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.69 6.29 -2.39 -0.02 1.68 16 32 H 0.05 1.60 6.57 -2.38 -0.02 1.59 16 33 H 0.36 18.39 4.60 -92.71 -0.43 17.96 16 34 H 0.24 15.08 6.77 -92.71 -0.63 14.45 16 35 H 0.05 1.76 6.29 -2.39 -0.02 1.74 16 36 H 0.07 2.06 6.57 -2.39 -0.02 2.05 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.42 6.95 6.58 -92.71 -0.61 6.34 16 39 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.41 7.58 7.45 -92.71 -0.69 6.89 16 42 H 0.41 4.98 8.48 -92.71 -0.79 4.19 16 43 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 47 H 0.24 0.40 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -77.51 392.74 -0.71 -78.22 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -1.33 Total: 40.77 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.59 Total: 11.60 kcal Atomic # 7 Polarization: -137.63 SS G_CDS: -8.88 Total: -146.51 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.14 Total: -37.62 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -77.51 -0.71 -78.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674773313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.055 kcal (2) G-P(sol) polarization free energy of solvation -77.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds