Wall clock time and date at job start Tue Mar 31 2020 22:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.36943 * 119.99781 * 274.99955 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99694 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 16 21 21 C 1.34780 * 120.00091 * 179.97438 * 20 19 17 22 22 O 1.21583 * 119.99974 * 359.97438 * 21 20 19 23 23 N 1.34772 * 120.00308 * 179.97438 * 21 20 19 24 24 C 1.46500 * 120.00126 * 180.02562 * 23 21 20 25 25 C 1.50703 * 109.47031 * 179.97438 * 24 23 21 26 26 C 1.34508 * 125.79079 * 89.99936 * 25 24 23 27 27 C 1.41387 * 106.84110 * 179.97438 * 26 25 24 28 28 C 1.34511 * 106.84098 * 0.02562 * 27 26 25 29 29 O 1.34304 * 108.41829 * 359.73679 * 28 27 26 30 30 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 32 32 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 33 33 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 34 34 H 0.96999 * 119.99735 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 36 36 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 37 37 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 38 38 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 0.97003 * 120.00560 * 359.97438 * 20 19 17 42 42 H 0.97005 * 119.99763 * 359.97438 * 23 21 20 43 43 H 1.09000 * 109.47187 * 299.99524 * 24 23 21 44 44 H 1.08998 * 109.47287 * 59.99653 * 24 23 21 45 45 H 1.07999 * 126.58336 * 0.03736 * 26 25 24 46 46 H 1.08004 * 126.57867 * 179.97438 * 27 26 25 47 47 H 1.07998 * 125.78949 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.9251 -1.9386 3.4501 9 14 2.7898 0.2703 5.1183 10 1 1.4670 0.8060 5.5288 11 1 3.2999 -0.6477 6.1682 12 1 3.7442 1.3934 4.9372 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 7 0.8825 -0.9315 -5.9610 21 6 0.4664 -0.5145 -7.1732 22 8 0.1272 0.6418 -7.3349 23 7 0.4262 -1.3792 -8.2062 24 6 -0.0256 -0.9258 -9.5239 25 6 0.0241 -2.0768 -10.4955 26 6 -0.9758 -2.9420 -10.7418 27 6 -0.5001 -3.8517 -11.7141 28 6 0.7622 -3.4882 -12.0033 29 8 1.0726 -2.4093 -11.2662 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2490 -1.6316 1.1528 34 1 3.2491 -2.3956 4.2420 35 1 3.9330 -1.2358 -0.3588 36 1 3.9335 -1.2361 -2.1385 37 1 3.9337 0.3057 -1.2486 38 1 1.3210 0.9104 -2.4018 39 1 -0.0733 0.4008 -4.6533 40 1 1.6006 0.8308 -5.0792 41 1 1.1527 -1.8541 -5.8320 42 1 0.6971 -2.3017 -8.0772 43 1 -1.0484 -0.5562 -9.4501 44 1 0.6254 -0.1254 -9.8757 45 1 -1.9546 -2.9414 -10.2854 46 1 -1.0455 -4.6800 -12.1419 47 1 1.4139 -3.9779 -12.7117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674773316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:33 Heat of formation + Delta-G solvation = -36.224268 kcal Electronic energy + Delta-G solvation = -28017.654427 eV Core-core repulsion = 23816.892501 eV Total energy + Delta-G solvation = -4200.761926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.06785 -40.49302 -39.57565 -36.92943 -35.52985 -34.57424 -34.01721 -33.44155 -31.89997 -30.96631 -29.81745 -28.46940 -27.72047 -25.78586 -24.02685 -22.81018 -22.24814 -21.24040 -21.08321 -20.49266 -20.10291 -19.13967 -17.98823 -17.47637 -16.88512 -16.58470 -16.33224 -16.23536 -15.56512 -15.29194 -14.95928 -14.70208 -14.46110 -14.30709 -13.77294 -13.65999 -13.52920 -13.32114 -13.24956 -13.12335 -13.10272 -12.76716 -12.45911 -12.36268 -11.88778 -11.74190 -11.22864 -10.99360 -10.85174 -10.72607 -10.65288 -10.41350 -10.27405 -10.01906 -9.91517 -9.68813 -9.68399 -9.22516 -9.08491 -9.07171 -8.84342 -7.02802 -5.80718 -3.10608 1.07196 2.01342 2.33349 2.54718 2.56659 2.90530 3.23899 3.41544 3.46577 3.47220 3.99656 4.08522 4.52926 4.54180 4.56063 4.63072 4.90227 5.05635 5.15502 5.17288 5.24655 5.30735 5.44108 5.45559 5.56730 5.62838 5.70307 5.84563 5.94969 5.98990 6.06208 6.07394 6.14217 6.33502 6.37444 6.46472 6.53147 6.58107 6.62332 6.76817 6.87794 6.98570 7.51291 7.65113 7.67283 8.16830 8.25790 8.36821 9.48260 10.03005 10.37926 11.41473 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033609 B = 0.001531 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.914101 B =18281.604817 C =18591.125101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.718 5.718 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.136 3.864 14 H 0.086 0.914 15 C -0.153 4.153 16 N -0.710 5.710 17 C 0.507 3.493 18 O -0.541 6.541 19 C 0.119 3.881 20 N -0.731 5.731 21 C 0.711 3.289 22 O -0.591 6.591 23 N -0.745 5.745 24 C 0.224 3.776 25 C -0.039 4.039 26 C -0.182 4.182 27 C -0.219 4.219 28 C -0.029 4.029 29 O -0.171 6.171 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.401 0.599 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.409 0.591 42 H 0.401 0.599 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 -0.504 -30.281 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.031 3.969 14 H 0.104 0.896 15 C -0.211 4.211 16 N -0.361 5.361 17 C 0.292 3.708 18 O -0.419 6.419 19 C -0.009 4.009 20 N -0.390 5.390 21 C 0.411 3.589 22 O -0.469 6.469 23 N -0.402 5.402 24 C 0.100 3.900 25 C -0.089 4.089 26 C -0.202 4.202 27 C -0.238 4.238 28 C -0.097 4.097 29 O -0.067 6.067 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.247 0.753 42 H 0.236 0.764 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.170 0.830 46 H 0.169 0.831 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.789 0.005 -30.268 30.817 hybrid contribution 0.088 -0.518 0.991 1.122 sum -5.701 -0.513 -29.277 29.831 Atomic orbital electron populations 1.22457 0.99004 1.01113 0.99933 1.20398 0.92153 0.95631 0.86072 0.93053 1.42275 1.78235 1.10665 1.04790 1.19150 1.37056 0.93890 0.87124 0.91168 1.24739 1.01940 0.95962 0.98056 1.69653 1.50484 1.08629 1.29092 0.86268 0.77764 0.78593 0.83525 1.21284 1.21709 1.21263 1.21394 0.94531 0.97603 0.83353 0.89586 1.22052 0.94762 1.01881 1.02392 1.45983 1.66318 1.14139 1.09618 1.20413 0.78094 0.87494 0.84800 1.90698 1.50538 1.15920 1.84753 1.20919 1.03647 0.92149 0.84194 1.44707 1.71469 1.15040 1.07742 1.15693 0.78524 0.84629 0.80092 1.90949 1.55499 1.16821 1.83662 1.45084 1.72710 1.13671 1.08728 1.19378 1.02129 0.90827 0.77656 1.22297 0.86943 1.01006 0.98656 1.21755 1.00763 0.96511 1.01155 1.21913 0.96172 1.03345 1.02330 1.24170 0.97796 0.88982 0.98746 1.84057 1.38733 1.39850 1.44049 0.93434 0.92587 0.94516 0.78055 0.93389 0.90015 0.93472 0.92968 0.76457 0.88371 0.88408 0.75345 0.76441 0.88234 0.89683 0.83047 0.83150 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.33 37.16 0.35 -2.44 16 2 C 0.17 3.06 2.52 -67.93 -0.17 2.89 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -16.95 4.43 -53.43 -0.24 -17.18 16 5 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 9 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.14 2.17 2.20 -67.93 -0.15 2.02 16 14 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 15 C -0.15 -2.51 9.33 37.16 0.35 -2.17 16 16 N -0.71 -8.68 4.38 -53.81 -0.24 -8.92 16 17 C 0.51 6.32 7.86 -10.98 -0.09 6.24 16 18 O -0.54 -8.57 15.33 5.55 0.09 -8.48 16 19 C 0.12 1.18 6.15 -5.20 -0.03 1.15 16 20 N -0.73 -7.41 5.53 -66.42 -0.37 -7.78 16 21 C 0.71 7.74 8.57 -86.92 -0.74 7.00 16 22 O -0.59 -8.33 16.34 5.29 0.09 -8.24 16 23 N -0.74 -6.03 5.55 -66.41 -0.37 -6.40 16 24 C 0.22 1.65 6.20 -5.19 -0.03 1.61 16 25 C -0.04 -0.28 6.69 -35.63 -0.24 -0.52 16 26 C -0.18 -1.20 10.81 -39.70 -0.43 -1.63 16 27 C -0.22 -1.28 10.91 -39.70 -0.43 -1.71 16 28 C -0.03 -0.16 12.09 29.41 0.36 0.20 16 29 O -0.17 -1.35 10.65 5.71 0.06 -1.28 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 33 H 0.39 9.84 7.58 -40.82 -0.31 9.53 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.56 7.44 -51.93 -0.39 1.17 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 3.85 8.39 -40.82 -0.34 3.50 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.41 4.00 7.45 -40.82 -0.30 3.70 16 42 H 0.40 2.63 8.48 -40.82 -0.35 2.28 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 47 H 0.21 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -33.95 402.14 -7.81 -41.76 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -7.08 Total: 14.58 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.51 Total: 5.71 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.48 Total: -66.94 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.23 Total: -18.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.95 -7.81 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674773316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.539 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds