Wall clock time and date at job start Tue Mar 31 2020 22:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35772 * 116.99909 * 2 1 4 4 C 1.35599 * 126.08489 * 175.30336 * 3 2 1 5 5 C 1.41052 * 107.79743 * 180.15432 * 4 3 2 6 6 C 1.47722 * 125.98218 * 179.83150 * 5 4 3 7 7 O 1.21579 * 119.99929 * 6.41999 * 6 5 4 8 8 N 1.34776 * 120.00174 * 186.42742 * 6 5 4 9 9 C 1.47153 * 120.98223 * 356.18146 * 8 6 5 10 10 C 1.53297 * 108.38233 * 129.44477 * 9 8 6 11 11 O 1.42955 * 109.22133 * 52.30619 * 10 9 8 12 12 C 1.42965 * 114.16558 * 297.41190 * 11 10 9 13 13 H 1.08999 * 109.55904 * 302.63322 * 12 11 10 14 14 C 1.53002 * 109.51337 * 182.50709 * 12 11 10 15 15 H 1.08996 * 109.47586 * 185.25505 * 14 12 11 16 16 C 1.53001 * 109.47071 * 305.25800 * 14 12 11 17 17 N 1.46505 * 109.47118 * 65.25484 * 14 12 11 18 18 C 1.36935 * 119.99834 * 155.00047 * 17 14 12 19 19 H 1.08000 * 120.00418 * 359.97438 * 18 17 14 20 20 C 1.38816 * 119.99475 * 180.02562 * 18 17 14 21 21 N 1.31612 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99479 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47061 * 60.00353 * 22 20 18 24 24 H 1.48500 * 109.47001 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47432 * 299.99722 * 22 20 18 26 26 C 1.47147 * 120.98155 * 176.16321 * 8 6 5 27 27 N 1.31862 * 108.04106 * 359.55923 * 5 4 3 28 28 N 1.35835 * 126.08500 * 354.97296 * 3 2 1 29 29 C 1.46504 * 125.95093 * 359.97017 * 28 3 2 30 30 H 1.08997 * 109.47372 * 56.03705 * 1 2 3 31 31 H 1.08997 * 109.47014 * 176.03752 * 1 2 3 32 32 H 1.09006 * 109.46796 * 296.03796 * 1 2 3 33 33 H 1.08001 * 126.09867 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.67887 * 249.16679 * 9 8 6 35 35 H 1.08997 * 109.68097 * 9.72373 * 9 8 6 36 36 H 1.09005 * 109.50675 * 172.22532 * 10 9 8 37 37 H 1.08999 * 109.51341 * 292.32335 * 10 9 8 38 38 H 1.08995 * 109.47196 * 60.00228 * 16 14 12 39 39 H 1.09005 * 109.46971 * 179.97438 * 16 14 12 40 40 H 1.09002 * 109.47460 * 299.99575 * 16 14 12 41 41 H 0.96996 * 119.99848 * 335.00581 * 17 14 12 42 42 H 0.96999 * 120.00292 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.68457 * 110.82902 * 26 8 6 44 44 H 1.08998 * 109.68535 * 350.27378 * 26 8 6 45 45 H 1.08992 * 109.47194 * 276.68895 * 29 28 3 46 46 H 1.09001 * 109.46606 * 36.68870 * 29 28 3 47 47 H 1.08997 * 109.47500 * 156.68433 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3811 1.4255 0.0897 5 6 3.5958 2.8193 0.0571 6 6 4.9059 3.4976 0.1325 7 8 5.9308 2.8438 0.1148 8 7 4.9650 4.8411 0.2209 9 6 3.7431 5.6588 0.1604 10 6 3.7482 6.6247 1.3508 11 8 4.9878 7.3364 1.3740 12 6 6.1362 6.5057 1.5610 13 1 6.0319 5.9422 2.4881 14 6 7.3916 7.3775 1.6314 15 1 8.2744 6.7401 1.6801 16 6 7.4690 8.2617 0.3851 17 7 7.3328 8.2226 2.8267 18 6 8.4890 8.6910 3.3915 19 1 9.4442 8.4372 2.9560 20 6 8.4333 9.4913 4.5244 21 7 7.2694 9.8002 5.0554 22 14 10.0106 10.1297 5.2952 23 1 10.7446 10.9590 4.3059 24 1 9.6812 10.9552 6.4849 25 1 10.8596 8.9833 5.7072 26 6 6.2534 5.5337 0.3813 27 7 2.4228 3.4105 -0.0584 28 7 1.4342 2.4190 -0.0962 29 6 -0.0078 2.6466 -0.2189 30 1 -0.3634 0.5741 -0.8523 31 1 -0.3633 -1.0252 -0.0710 32 1 -0.3633 0.4511 0.9234 33 1 4.1441 0.6659 0.1743 34 1 3.7256 6.2243 -0.7712 35 1 2.8664 5.0134 0.2151 36 1 2.9244 7.3314 1.2496 37 1 3.6333 6.0617 2.2770 38 1 6.5863 8.8992 0.3365 39 1 8.3631 8.8831 0.4355 40 1 7.5127 7.6330 -0.5043 41 1 6.4750 8.4501 3.2181 42 1 7.2305 10.3597 5.8468 43 1 6.4887 6.0866 -0.5281 44 1 7.0391 4.8055 0.5824 45 1 -0.3042 2.5446 -1.2628 46 1 -0.5438 1.9139 0.3843 47 1 -0.2483 3.6507 0.1306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675607057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:54 Heat of formation + Delta-G solvation = 22.150703 kcal Electronic energy + Delta-G solvation = -30022.343288 eV Core-core repulsion = 25824.112691 eV Total energy + Delta-G solvation = -4198.230597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05533 -40.19724 -38.79344 -38.10360 -35.46974 -34.50839 -33.88335 -32.43936 -30.82751 -30.02425 -28.62983 -28.26854 -27.46701 -26.54172 -24.76184 -23.50457 -23.32583 -21.90342 -21.56315 -19.60790 -19.41380 -18.16460 -17.19768 -17.18040 -16.98000 -16.36232 -15.91665 -15.65185 -15.55507 -15.45909 -14.98578 -14.85337 -14.46280 -14.39438 -14.23921 -13.91424 -13.66021 -13.39725 -13.26834 -13.07892 -12.77639 -12.51132 -12.25799 -11.98494 -11.88705 -11.83331 -11.27980 -11.05146 -10.88026 -10.72622 -10.66703 -10.40982 -10.28356 -10.09988 -9.77602 -9.70958 -9.57784 -9.56731 -8.83533 -8.80359 -8.41100 -6.87504 -5.67955 -2.96417 1.00984 1.66926 1.86307 2.37102 2.89699 3.22164 3.49804 3.53822 3.54882 3.71910 4.11044 4.19391 4.21365 4.44258 4.49526 4.63574 4.64877 4.83144 4.90220 4.93081 4.94634 5.17685 5.27722 5.31161 5.42104 5.43414 5.56065 5.63785 5.72828 5.77947 5.85802 5.89188 6.05327 6.08538 6.14846 6.30131 6.50917 6.53831 6.72495 6.87586 6.88994 6.96044 7.23241 7.31164 7.57915 7.76771 8.01535 8.50312 9.62006 10.20266 10.57021 11.54502 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.002290 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.692949 B =12226.414490 C =12405.153054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.273 3.727 4 C -0.233 4.233 5 C 0.069 3.931 6 C 0.597 3.403 7 O -0.524 6.524 8 N -0.596 5.596 9 C 0.045 3.955 10 C 0.049 3.951 11 O -0.360 6.360 12 C 0.076 3.924 13 H 0.064 0.936 14 C 0.185 3.815 15 H 0.060 0.940 16 C -0.162 4.162 17 N -0.719 5.719 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.083 3.917 27 N -0.253 5.253 28 N -0.395 5.395 29 C 0.073 3.927 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.167 0.833 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.389 0.611 42 H 0.254 0.746 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.080 -18.373 -13.660 30.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.106 3.894 4 C -0.263 4.263 5 C -0.097 4.097 6 C 0.382 3.618 7 O -0.398 6.398 8 N -0.329 5.329 9 C -0.078 4.078 10 C -0.030 4.030 11 O -0.278 6.278 12 C 0.017 3.983 13 H 0.082 0.918 14 C 0.074 3.926 15 H 0.078 0.922 16 C -0.222 4.222 17 N -0.360 5.360 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.040 4.040 27 N -0.084 5.084 28 N -0.191 5.191 29 C -0.067 4.067 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.184 0.816 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.115 0.885 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.991 -17.707 -13.716 30.022 hybrid contribution 0.356 -0.368 0.620 0.804 sum -19.635 -18.075 -13.096 29.728 Atomic orbital electron populations 1.23667 0.77902 1.05461 1.01498 1.86321 1.21671 1.21561 1.89800 1.19576 0.91100 0.78972 0.99734 1.20340 0.92205 0.95486 1.18233 1.21851 0.92553 0.93139 1.02134 1.17008 0.86141 0.81493 0.77196 1.90816 1.33958 1.64660 1.50317 1.48012 1.09048 1.04949 1.70887 1.23380 0.88889 0.95561 1.00001 1.22889 0.88384 0.95197 0.96480 1.88086 1.13228 1.33096 1.93342 1.22968 0.87966 0.91727 0.95642 0.91828 1.20199 0.91921 0.91518 0.88945 0.92233 1.22413 1.02154 1.00486 0.97180 1.42348 1.06951 1.58344 1.28403 1.19213 0.86539 1.24386 1.06759 0.91199 1.24736 0.96602 1.01001 0.98664 1.69667 1.22606 1.41813 1.23916 0.86279 0.82842 0.78520 0.78610 1.21321 1.21799 1.21308 1.22583 0.85035 0.95992 1.00343 1.77345 0.95366 1.09941 1.25738 1.49349 1.07331 1.03183 1.59241 1.22583 0.74879 1.05813 1.03445 0.91693 0.87162 0.91773 0.81550 0.90669 0.84642 0.88042 0.93092 0.92440 0.92923 0.94619 0.77681 0.93572 0.89790 0.88023 0.90243 0.88506 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.37 101.05 0.95 0.98 16 2 O -0.29 -2.30 10.57 -19.03 -0.20 -2.50 16 3 C 0.27 2.72 7.78 -16.72 -0.13 2.59 16 4 C -0.23 -2.83 10.60 -39.46 -0.42 -3.25 16 5 C 0.07 0.92 6.87 -82.91 -0.57 0.35 16 6 C 0.60 9.22 7.71 -12.39 -0.10 9.13 16 7 O -0.52 -9.41 16.39 5.30 0.09 -9.32 16 8 N -0.60 -8.75 3.02 -173.43 -0.52 -9.27 16 9 C 0.05 0.57 6.48 -3.53 -0.02 0.55 16 10 C 0.05 0.67 6.98 37.31 0.26 0.93 16 11 O -0.36 -6.42 9.24 -35.23 -0.33 -6.75 16 12 C 0.08 1.37 2.61 -26.58 -0.07 1.30 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.18 3.81 2.77 -67.93 -0.19 3.62 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 C -0.16 -3.08 9.06 37.16 0.34 -2.74 16 17 N -0.72 -18.64 5.10 -53.42 -0.27 -18.91 16 18 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 22 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.08 1.29 5.81 -3.53 -0.02 1.27 16 27 N -0.25 -2.90 8.91 33.34 0.30 -2.61 16 28 N -0.40 -3.50 4.03 -68.19 -0.28 -3.78 16 29 C 0.07 0.28 9.63 59.85 0.58 0.85 16 30 H 0.06 0.11 5.99 -51.93 -0.31 -0.20 16 31 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.12 6.53 -51.93 -0.34 -0.22 16 33 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.14 1.58 3.85 -106.26 -0.41 1.17 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.15 7.55 -51.93 -0.39 0.75 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 41 H 0.39 10.89 7.59 -40.82 -0.31 10.58 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 1.24 6.27 -51.93 -0.33 0.91 16 44 H 0.10 1.62 7.11 -51.93 -0.37 1.25 16 45 H 0.08 0.18 7.72 -51.93 -0.40 -0.22 16 46 H 0.10 0.14 4.51 -51.93 -0.23 -0.09 16 47 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -35.84 375.13 -6.27 -42.11 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.77 Total: 7.42 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 0.36 Total: 8.19 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.05 Total: -62.61 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.44 Total: -18.56 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.84 -6.27 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675607057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.262 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds