Wall clock time and date at job start Tue Mar 31 2020 22:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35772 * 116.99909 * 2 1 4 4 C 1.35599 * 126.08489 * 175.30336 * 3 2 1 5 5 C 1.41052 * 107.79743 * 180.15432 * 4 3 2 6 6 C 1.47722 * 125.98218 * 179.83150 * 5 4 3 7 7 O 1.21579 * 119.99929 * 6.41999 * 6 5 4 8 8 N 1.34776 * 120.00174 * 186.42742 * 6 5 4 9 9 C 1.47153 * 120.98223 * 356.18146 * 8 6 5 10 10 C 1.53297 * 108.38233 * 129.44477 * 9 8 6 11 11 O 1.42955 * 109.22133 * 52.30619 * 10 9 8 12 12 C 1.42965 * 114.16558 * 297.41190 * 11 10 9 13 13 H 1.08999 * 109.55904 * 302.63322 * 12 11 10 14 14 C 1.53002 * 109.51337 * 182.50709 * 12 11 10 15 15 H 1.08996 * 109.47586 * 185.25505 * 14 12 11 16 16 C 1.53001 * 109.47071 * 305.25800 * 14 12 11 17 17 N 1.46505 * 109.47118 * 65.25484 * 14 12 11 18 18 C 1.36935 * 119.99834 * 155.00047 * 17 14 12 19 19 H 1.08000 * 120.00418 * 359.97438 * 18 17 14 20 20 C 1.38816 * 119.99475 * 180.02562 * 18 17 14 21 21 N 1.31612 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99479 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47061 * 60.00353 * 22 20 18 24 24 H 1.48500 * 109.47001 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47432 * 299.99722 * 22 20 18 26 26 C 1.47147 * 120.98155 * 176.16321 * 8 6 5 27 27 N 1.31862 * 108.04106 * 359.55923 * 5 4 3 28 28 N 1.35835 * 126.08500 * 354.97296 * 3 2 1 29 29 C 1.46504 * 125.95093 * 359.97017 * 28 3 2 30 30 H 1.08997 * 109.47372 * 56.03705 * 1 2 3 31 31 H 1.08997 * 109.47014 * 176.03752 * 1 2 3 32 32 H 1.09006 * 109.46796 * 296.03796 * 1 2 3 33 33 H 1.08001 * 126.09867 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.67887 * 249.16679 * 9 8 6 35 35 H 1.08997 * 109.68097 * 9.72373 * 9 8 6 36 36 H 1.09005 * 109.50675 * 172.22532 * 10 9 8 37 37 H 1.08999 * 109.51341 * 292.32335 * 10 9 8 38 38 H 1.08995 * 109.47196 * 60.00228 * 16 14 12 39 39 H 1.09005 * 109.46971 * 179.97438 * 16 14 12 40 40 H 1.09002 * 109.47460 * 299.99575 * 16 14 12 41 41 H 0.96996 * 119.99848 * 335.00581 * 17 14 12 42 42 H 0.96999 * 120.00292 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.68457 * 110.82902 * 26 8 6 44 44 H 1.08998 * 109.68535 * 350.27378 * 26 8 6 45 45 H 1.08992 * 109.47194 * 276.68895 * 29 28 3 46 46 H 1.09001 * 109.46606 * 36.68870 * 29 28 3 47 47 H 1.08997 * 109.47500 * 156.68433 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3811 1.4255 0.0897 5 6 3.5958 2.8193 0.0571 6 6 4.9059 3.4976 0.1325 7 8 5.9308 2.8438 0.1148 8 7 4.9650 4.8411 0.2209 9 6 3.7431 5.6588 0.1604 10 6 3.7482 6.6247 1.3508 11 8 4.9878 7.3364 1.3740 12 6 6.1362 6.5057 1.5610 13 1 6.0319 5.9422 2.4881 14 6 7.3916 7.3775 1.6314 15 1 8.2744 6.7401 1.6801 16 6 7.4690 8.2617 0.3851 17 7 7.3328 8.2226 2.8267 18 6 8.4890 8.6910 3.3915 19 1 9.4442 8.4372 2.9560 20 6 8.4333 9.4913 4.5244 21 7 7.2694 9.8002 5.0554 22 14 10.0106 10.1297 5.2952 23 1 10.7446 10.9590 4.3059 24 1 9.6812 10.9552 6.4849 25 1 10.8596 8.9833 5.7072 26 6 6.2534 5.5337 0.3813 27 7 2.4228 3.4105 -0.0584 28 7 1.4342 2.4190 -0.0962 29 6 -0.0078 2.6466 -0.2189 30 1 -0.3634 0.5741 -0.8523 31 1 -0.3633 -1.0252 -0.0710 32 1 -0.3633 0.4511 0.9234 33 1 4.1441 0.6659 0.1743 34 1 3.7256 6.2243 -0.7712 35 1 2.8664 5.0134 0.2151 36 1 2.9244 7.3314 1.2496 37 1 3.6333 6.0617 2.2770 38 1 6.5863 8.8992 0.3365 39 1 8.3631 8.8831 0.4355 40 1 7.5127 7.6330 -0.5043 41 1 6.4750 8.4501 3.2181 42 1 7.2305 10.3597 5.8468 43 1 6.4887 6.0866 -0.5281 44 1 7.0391 4.8055 0.5824 45 1 -0.3042 2.5446 -1.2628 46 1 -0.5438 1.9139 0.3843 47 1 -0.2483 3.6507 0.1306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675607057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:53 Heat of formation + Delta-G solvation = -5.594127 kcal Electronic energy + Delta-G solvation = -30023.546394 eV Core-core repulsion = 25824.112691 eV Total energy + Delta-G solvation = -4199.433703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.84119 -41.35420 -39.74938 -39.11662 -37.12760 -35.83836 -34.57396 -34.25553 -32.07742 -31.16515 -29.98523 -29.25357 -28.48048 -27.21655 -26.36901 -24.98242 -24.55951 -22.82802 -22.59228 -21.13696 -20.41846 -19.30672 -18.95112 -17.98791 -17.74379 -17.58162 -17.02926 -16.70933 -16.60988 -16.37342 -16.32402 -15.99913 -15.78256 -15.43182 -15.30481 -15.08484 -14.68192 -14.47460 -14.43802 -14.01134 -13.96590 -13.87152 -13.60310 -13.39896 -13.02079 -12.78942 -12.44433 -12.43212 -12.33107 -12.27479 -12.20404 -11.93246 -11.69000 -11.62860 -11.60815 -11.24062 -10.91083 -10.84238 -10.27596 -9.65296 -9.57581 -8.98819 -7.89875 -5.18598 0.08951 0.99187 1.00522 1.48444 1.52096 1.56261 1.58071 2.09270 2.13753 2.58709 2.78585 2.94732 3.43214 3.53491 3.65320 3.92242 3.97001 3.99782 4.02553 4.08174 4.18501 4.23788 4.31035 4.34204 4.35730 4.42320 4.45399 4.54234 4.60025 4.63961 4.71510 4.74372 4.80389 4.89371 4.96832 4.97585 5.10552 5.12877 5.27852 5.45389 5.53786 5.64858 6.02366 6.21277 6.27208 6.29440 6.31761 6.85445 7.37566 8.13193 8.38369 9.33556 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.002290 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.692949 B =12226.414490 C =12405.153054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.300 6.300 3 C 0.287 3.713 4 C -0.262 4.262 5 C 0.048 3.952 6 C 0.594 3.406 7 O -0.559 6.559 8 N -0.598 5.598 9 C 0.052 3.948 10 C 0.044 3.956 11 O -0.380 6.380 12 C 0.090 3.910 13 H 0.040 0.960 14 C 0.177 3.823 15 H 0.061 0.939 16 C -0.149 4.149 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.278 1.278 26 C 0.092 3.908 27 N -0.256 5.256 28 N -0.381 5.381 29 C 0.057 3.943 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.047 -19.211 -15.119 32.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.205 6.205 3 C 0.118 3.882 4 C -0.292 4.292 5 C -0.117 4.117 6 C 0.381 3.619 7 O -0.436 6.436 8 N -0.330 5.330 9 C -0.070 4.070 10 C -0.033 4.033 11 O -0.299 6.299 12 C 0.031 3.969 13 H 0.058 0.942 14 C 0.068 3.932 15 H 0.079 0.921 16 C -0.208 4.208 17 N -0.373 5.373 18 C -0.371 4.371 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.204 1.204 26 C -0.031 4.031 27 N -0.089 5.089 28 N -0.178 5.178 29 C -0.081 4.081 30 H 0.102 0.898 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.176 0.824 34 H 0.107 0.893 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.142 0.858 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.984 -18.568 -15.225 32.556 hybrid contribution 0.733 -0.243 1.008 1.270 sum -21.251 -18.811 -14.217 31.743 Atomic orbital electron populations 1.24111 0.75158 1.07568 1.03122 1.86344 1.24518 1.20305 1.89376 1.19421 0.90654 0.79985 0.98154 1.20385 0.93601 0.95109 1.20085 1.21484 0.92158 0.93538 1.04487 1.17329 0.86741 0.81485 0.76350 1.90779 1.35406 1.65385 1.51993 1.48080 1.09305 1.05052 1.70540 1.23471 0.88495 0.95214 0.99842 1.23138 0.87391 0.95955 0.96793 1.88043 1.14293 1.34129 1.93429 1.22588 0.87356 0.91217 0.95780 0.94174 1.20430 0.93505 0.91458 0.87825 0.92071 1.22216 1.00864 1.00175 0.97557 1.42523 1.05646 1.59107 1.29979 1.19629 0.87573 1.23375 1.06493 0.90433 1.25572 0.99716 1.02099 0.99672 1.69836 1.24747 1.43075 1.24430 0.85209 0.79158 0.77930 0.77447 1.20370 1.22309 1.20446 1.22380 0.85689 0.95381 0.99631 1.77132 0.95210 1.10861 1.25651 1.49655 1.08603 1.02276 1.57298 1.23130 0.71929 1.07403 1.05649 0.89765 0.85082 0.90292 0.82351 0.89279 0.83337 0.85377 0.93957 0.93532 0.94292 0.91068 0.79323 0.94167 0.88357 0.88704 0.87999 0.85767 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.02 9.37 113.37 1.06 1.05 16 2 O -0.30 -4.15 10.57 -91.00 -0.96 -5.11 16 3 C 0.29 5.27 7.78 83.46 0.65 5.92 16 4 C -0.26 -6.41 10.60 22.35 0.24 -6.18 16 5 C 0.05 1.27 6.87 42.34 0.29 1.56 16 6 C 0.59 18.68 7.71 86.75 0.67 19.35 16 7 O -0.56 -20.82 16.39 -3.97 -0.07 -20.89 16 8 N -0.60 -17.37 3.02 -820.89 -2.48 -19.85 16 9 C 0.05 1.24 6.48 86.35 0.56 1.80 16 10 C 0.04 1.19 6.98 72.08 0.50 1.69 16 11 O -0.38 -13.54 9.24 -148.98 -1.38 -14.92 16 12 C 0.09 3.28 2.61 30.70 0.08 3.36 16 13 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 14 C 0.18 7.34 2.77 44.99 0.12 7.47 16 15 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 16 C -0.15 -5.52 9.06 71.98 0.65 -4.87 16 17 N -0.73 -38.79 5.10 -322.93 -1.65 -40.43 16 18 C -0.24 -13.68 9.93 84.03 0.83 -12.84 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 21 N -0.97 -61.30 13.06 21.65 0.28 -61.02 16 22 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 C 0.09 2.84 5.81 86.36 0.50 3.34 16 27 N -0.26 -5.50 8.91 -48.43 -0.43 -5.93 16 28 N -0.38 -5.83 4.03 -480.57 -1.94 -7.77 16 29 C 0.06 0.21 9.63 127.77 1.23 1.45 16 30 H 0.08 -0.09 5.99 -2.39 -0.01 -0.10 16 31 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.08 -0.01 6.53 -2.38 -0.02 -0.03 16 33 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.15 3.21 3.85 -73.46 -0.28 2.93 16 36 H 0.13 2.73 8.14 -2.38 -0.02 2.71 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.82 7.55 -2.39 -0.02 1.80 16 39 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 2.12 6.42 -2.39 -0.02 2.10 16 41 H 0.37 21.67 7.59 -92.71 -0.70 20.97 16 42 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.10 2.74 6.27 -2.39 -0.01 2.73 16 44 H 0.09 3.07 7.11 -2.39 -0.02 3.06 16 45 H 0.10 0.01 7.72 -2.39 -0.02 -0.01 16 46 H 0.12 -0.19 4.51 -2.39 -0.01 -0.20 16 47 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -79.96 375.13 1.31 -78.65 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.04 Total: 28.86 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 7.86 Total: 18.92 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -6.21 Total: -135.01 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.40 Total: -40.91 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -79.96 1.31 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675607057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.061 kcal (2) G-P(sol) polarization free energy of solvation -79.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds