Wall clock time and date at job start Tue Mar 31 2020 22:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00283 * 2 1 4 4 C 1.53000 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46920 * 304.99846 * 4 3 2 6 6 C 1.52998 * 109.47314 * 64.99677 * 4 3 2 7 7 C 1.52997 * 109.46965 * 185.00219 * 4 3 2 8 8 C 1.50695 * 109.47307 * 175.00154 * 7 4 3 9 9 O 1.21283 * 120.00127 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00474 * 179.97438 * 8 7 4 11 11 C 1.46499 * 120.00314 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46881 * 179.97438 * 11 10 8 13 13 N 1.31803 * 119.08966 * 90.00536 * 12 11 10 14 14 C 1.32790 * 120.71324 * 179.97438 * 13 12 11 15 15 O 1.35524 * 120.50894 * 180.02562 * 14 13 12 16 16 C 1.39421 * 118.98190 * 359.97438 * 14 13 12 17 17 C 1.38183 * 118.34513 * 359.97438 * 16 14 13 18 18 C 1.50697 * 120.41145 * 180.02562 * 17 16 14 19 19 N 1.46499 * 109.47276 * 94.99947 * 18 17 16 20 20 C 1.36935 * 119.99938 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00518 * 359.72965 * 20 19 18 22 22 C 1.38817 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99869 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46676 * 90.00727 * 24 22 20 26 26 H 1.48502 * 109.46977 * 210.00025 * 24 22 20 27 27 H 1.48494 * 109.47494 * 330.00753 * 24 22 20 28 28 N 1.31755 * 119.10106 * 270.27717 * 12 11 10 29 29 H 1.09005 * 109.46987 * 59.99812 * 1 2 3 30 30 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47010 * 300.00351 * 1 2 3 32 32 H 1.08996 * 109.46999 * 60.00125 * 3 2 1 33 33 H 1.08999 * 109.46951 * 299.99924 * 3 2 1 34 34 H 1.09001 * 109.47446 * 300.00342 * 6 4 3 35 35 H 1.09005 * 109.46989 * 60.00212 * 6 4 3 36 36 H 1.09000 * 109.47137 * 179.97438 * 6 4 3 37 37 H 1.09005 * 109.47521 * 54.99467 * 7 4 3 38 38 H 1.09000 * 109.46802 * 294.99627 * 7 4 3 39 39 H 0.96999 * 119.99572 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.46691 * 59.99889 * 11 10 8 41 41 H 1.08999 * 109.47029 * 300.00307 * 11 10 8 42 42 H 0.96696 * 113.99801 * 269.97843 * 15 14 13 43 43 H 1.08000 * 120.82741 * 180.02562 * 16 14 13 44 44 H 1.09004 * 109.47205 * 334.99922 * 18 17 16 45 45 H 1.09005 * 109.47240 * 215.00131 * 18 17 16 46 46 H 0.96999 * 119.99984 * 0.02562 * 19 18 17 47 47 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8428 6 6 3.9963 0.5363 -1.3063 7 6 4.1574 2.5768 0.1264 8 6 5.6538 2.4493 0.2505 9 8 6.1719 1.3527 0.2400 10 7 6.4165 3.5537 0.3733 11 6 7.8712 3.4296 0.4945 12 6 8.4837 4.8010 0.6170 13 7 8.6439 5.3266 1.8151 14 6 9.1806 6.5325 1.9604 15 8 9.3439 7.0687 3.1943 16 6 9.5747 7.2380 0.8243 17 6 9.3890 6.6481 -0.4115 18 6 9.7986 7.3687 -1.6700 19 7 11.1444 6.9421 -2.0611 20 6 11.7302 7.4667 -3.1821 21 1 11.1984 8.1917 -3.7805 22 6 13.0057 7.0628 -3.5524 23 7 13.6517 6.1753 -2.8263 24 14 13.8045 7.7780 -5.0821 25 1 14.5666 8.9994 -4.7175 26 1 14.7281 6.7762 -5.6725 27 1 12.7542 8.1270 -6.0720 28 7 8.8395 5.4439 -0.4766 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.5533 -0.4556 -1.3959 35 1 3.6811 1.1524 -2.1484 36 1 5.0829 0.4506 -1.3060 37 1 3.7603 3.0736 1.0118 38 1 3.9151 3.1643 -0.7592 39 1 6.0021 4.4307 0.3814 40 1 8.2683 2.9324 -0.3904 41 1 8.1132 2.8427 1.3805 42 1 8.5881 7.5884 3.5004 43 1 10.0148 8.2206 0.9079 44 1 9.7961 8.4438 -1.4903 45 1 9.0959 7.1323 -2.4691 46 1 11.6205 6.2880 -1.5259 47 1 14.5427 5.8929 -3.0852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691911119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:27 Heat of formation + Delta-G solvation = -65.508120 kcal Electronic energy + Delta-G solvation = -28135.785573 eV Core-core repulsion = 23933.753804 eV Total energy + Delta-G solvation = -4202.031769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29215 -40.04881 -38.38589 -37.83251 -35.83806 -35.02437 -34.54091 -33.15215 -31.89179 -30.69835 -29.09926 -27.63548 -26.89035 -26.58928 -25.64601 -23.52882 -22.91835 -21.62461 -21.20946 -20.22646 -18.91820 -17.91512 -17.61906 -17.20422 -16.70458 -16.37987 -16.14595 -15.98583 -15.68221 -15.40991 -15.23414 -14.76992 -14.40962 -14.20317 -13.92710 -13.72405 -13.35487 -13.30692 -13.09156 -13.04976 -12.68623 -12.51344 -12.34829 -12.13692 -11.90287 -11.87817 -11.36053 -11.18312 -11.07672 -10.96164 -10.87333 -10.67955 -10.42344 -10.16581 -10.04469 -10.01627 -9.83017 -9.41975 -9.26168 -9.24870 -9.00049 -7.07491 -5.84404 -3.16517 0.72961 0.96373 2.47681 2.79684 3.22136 3.39841 3.43344 3.45843 3.47251 3.64033 3.91360 4.28864 4.38516 4.53367 4.55908 4.67569 4.81688 4.88686 4.91812 4.99116 5.03690 5.06921 5.09739 5.20431 5.26870 5.28408 5.34514 5.47212 5.48356 5.58530 5.60291 5.71735 5.92773 5.94641 6.05078 6.11163 6.15763 6.31557 6.34561 6.42395 6.79052 6.97975 7.24057 7.25972 7.60553 8.03270 8.06486 8.30828 9.43039 9.93744 10.28941 11.37759 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.002032 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.554956 B =13777.524421 C =15361.645210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.065 3.935 4 C -0.074 4.074 5 H 0.088 0.912 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.518 3.482 9 O -0.530 6.530 10 N -0.721 5.721 11 C 0.195 3.805 12 C 0.316 3.684 13 N -0.533 5.533 14 C 0.353 3.647 15 O -0.474 6.474 16 C -0.217 4.217 17 C 0.200 3.800 18 C 0.197 3.803 19 N -0.722 5.722 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.929 5.929 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 N -0.491 5.491 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.401 0.599 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.404 0.596 43 H 0.156 0.844 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.386 0.614 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.683 -3.171 10.346 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.012 4.012 4 C -0.093 4.093 5 H 0.106 0.894 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.305 3.695 9 O -0.406 6.406 10 N -0.374 5.374 11 C 0.070 3.930 12 C 0.047 3.953 13 N -0.259 5.259 14 C 0.166 3.834 15 O -0.281 6.281 16 C -0.242 4.242 17 C 0.054 3.946 18 C 0.069 3.931 19 N -0.367 5.367 20 C -0.378 4.378 21 H 0.093 0.907 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 N -0.207 5.207 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.234 0.766 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.262 0.738 43 H 0.174 0.826 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.220 0.780 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.981 -5.142 10.124 27.441 hybrid contribution 0.336 2.060 -0.279 2.106 sum -24.646 -3.082 9.845 26.717 Atomic orbital electron populations 1.22740 0.81120 1.02784 0.99884 1.87897 1.19510 1.27851 1.95372 1.22602 0.93748 0.84741 1.00067 1.20824 0.91967 0.95149 1.01389 0.89365 1.21903 1.03293 1.00642 0.94926 1.21635 0.91953 0.99349 1.04562 1.20491 0.89212 0.83934 0.75874 1.90715 1.74822 1.25997 1.49099 1.45833 1.06603 1.09567 1.75390 1.19880 0.79411 0.89095 1.04584 1.22724 0.93721 0.96183 0.82698 1.67675 1.17078 1.12774 1.28325 1.19379 0.90870 0.87967 0.85188 1.84771 1.43826 1.69622 1.29839 1.22976 1.04483 1.04067 0.92629 1.22210 0.87613 0.88782 0.95948 1.19703 0.89845 0.94758 0.88772 1.42173 1.11848 1.51724 1.30994 1.19188 0.97669 1.19500 1.01407 0.90736 1.24797 0.97264 0.99257 0.99252 1.69674 1.13642 1.34291 1.40010 0.86122 0.79135 0.78053 0.82405 1.21579 1.21661 1.20598 1.68193 1.11748 1.08363 1.32419 0.94102 0.89625 0.94163 0.93354 0.93161 0.92126 0.93473 0.90462 0.88685 0.88456 0.76570 0.88174 0.88679 0.73768 0.82596 0.93876 0.93495 0.78045 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.54 10.24 -35.23 -0.36 -3.90 16 3 C 0.07 0.47 5.32 37.16 0.20 0.67 16 4 C -0.07 -0.65 2.27 -90.62 -0.21 -0.85 16 5 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 6 C -0.15 -1.52 8.83 37.16 0.33 -1.19 16 7 C -0.13 -0.97 5.17 -27.89 -0.14 -1.11 16 8 C 0.52 5.60 7.55 -10.99 -0.08 5.52 16 9 O -0.53 -7.70 13.97 5.55 0.08 -7.62 16 10 N -0.72 -7.48 5.55 -61.48 -0.34 -7.83 16 11 C 0.20 2.54 6.10 -5.20 -0.03 2.51 16 12 C 0.32 4.68 7.01 -157.22 -1.10 3.58 16 13 N -0.53 -7.77 10.36 -10.78 -0.11 -7.88 16 14 C 0.35 4.87 7.83 -16.70 -0.13 4.74 16 15 O -0.47 -5.29 13.58 -18.26 -0.25 -5.54 16 16 C -0.22 -3.15 9.79 -39.16 -0.38 -3.53 16 17 C 0.20 3.38 6.18 -82.32 -0.51 2.87 16 18 C 0.20 3.78 6.61 -5.20 -0.03 3.75 16 19 N -0.72 -18.01 5.59 -61.08 -0.34 -18.35 16 20 C -0.25 -6.74 9.99 -15.06 -0.15 -6.89 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 N -0.49 -8.29 10.27 -7.06 -0.07 -8.36 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.34 8.46 -40.82 -0.35 3.00 16 40 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.40 2.10 9.06 45.56 0.41 2.51 16 43 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 44 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.39 10.48 7.66 -40.82 -0.31 10.17 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 401.40 15.07 6.05 6.05 Total: -1.00 -35.42 401.40 -7.29 -42.71 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.41 Total: 10.03 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -1.23 Total: 11.01 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -0.14 Total: -69.75 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.53 Total: -17.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.42 -7.29 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691911119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.799 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds