Wall clock time and date at job start Tue Mar 31 2020 22:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00283 * 2 1 4 4 C 1.53000 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46920 * 304.99846 * 4 3 2 6 6 C 1.52998 * 109.47314 * 64.99677 * 4 3 2 7 7 C 1.52997 * 109.46965 * 185.00219 * 4 3 2 8 8 C 1.50695 * 109.47307 * 175.00154 * 7 4 3 9 9 O 1.21283 * 120.00127 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00474 * 179.97438 * 8 7 4 11 11 C 1.46499 * 120.00314 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46881 * 179.97438 * 11 10 8 13 13 N 1.31803 * 119.08966 * 90.00536 * 12 11 10 14 14 C 1.32790 * 120.71324 * 179.97438 * 13 12 11 15 15 O 1.35524 * 120.50894 * 180.02562 * 14 13 12 16 16 C 1.39421 * 118.98190 * 359.97438 * 14 13 12 17 17 C 1.38183 * 118.34513 * 359.97438 * 16 14 13 18 18 C 1.50697 * 120.41145 * 180.02562 * 17 16 14 19 19 N 1.46499 * 109.47276 * 94.99947 * 18 17 16 20 20 C 1.36935 * 119.99938 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00518 * 359.72965 * 20 19 18 22 22 C 1.38817 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99869 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46676 * 90.00727 * 24 22 20 26 26 H 1.48502 * 109.46977 * 210.00025 * 24 22 20 27 27 H 1.48494 * 109.47494 * 330.00753 * 24 22 20 28 28 N 1.31755 * 119.10106 * 270.27717 * 12 11 10 29 29 H 1.09005 * 109.46987 * 59.99812 * 1 2 3 30 30 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47010 * 300.00351 * 1 2 3 32 32 H 1.08996 * 109.46999 * 60.00125 * 3 2 1 33 33 H 1.08999 * 109.46951 * 299.99924 * 3 2 1 34 34 H 1.09001 * 109.47446 * 300.00342 * 6 4 3 35 35 H 1.09005 * 109.46989 * 60.00212 * 6 4 3 36 36 H 1.09000 * 109.47137 * 179.97438 * 6 4 3 37 37 H 1.09005 * 109.47521 * 54.99467 * 7 4 3 38 38 H 1.09000 * 109.46802 * 294.99627 * 7 4 3 39 39 H 0.96999 * 119.99572 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.46691 * 59.99889 * 11 10 8 41 41 H 1.08999 * 109.47029 * 300.00307 * 11 10 8 42 42 H 0.96696 * 113.99801 * 269.97843 * 15 14 13 43 43 H 1.08000 * 120.82741 * 180.02562 * 16 14 13 44 44 H 1.09004 * 109.47205 * 334.99922 * 18 17 16 45 45 H 1.09005 * 109.47240 * 215.00131 * 18 17 16 46 46 H 0.96999 * 119.99984 * 0.02562 * 19 18 17 47 47 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8428 6 6 3.9963 0.5363 -1.3063 7 6 4.1574 2.5768 0.1264 8 6 5.6538 2.4493 0.2505 9 8 6.1719 1.3527 0.2400 10 7 6.4165 3.5537 0.3733 11 6 7.8712 3.4296 0.4945 12 6 8.4837 4.8010 0.6170 13 7 8.6439 5.3266 1.8151 14 6 9.1806 6.5325 1.9604 15 8 9.3439 7.0687 3.1943 16 6 9.5747 7.2380 0.8243 17 6 9.3890 6.6481 -0.4115 18 6 9.7986 7.3687 -1.6700 19 7 11.1444 6.9421 -2.0611 20 6 11.7302 7.4667 -3.1821 21 1 11.1984 8.1917 -3.7805 22 6 13.0057 7.0628 -3.5524 23 7 13.6517 6.1753 -2.8263 24 14 13.8045 7.7780 -5.0821 25 1 14.5666 8.9994 -4.7175 26 1 14.7281 6.7762 -5.6725 27 1 12.7542 8.1270 -6.0720 28 7 8.8395 5.4439 -0.4766 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.5533 -0.4556 -1.3959 35 1 3.6811 1.1524 -2.1484 36 1 5.0829 0.4506 -1.3060 37 1 3.7603 3.0736 1.0118 38 1 3.9151 3.1643 -0.7592 39 1 6.0021 4.4307 0.3814 40 1 8.2683 2.9324 -0.3904 41 1 8.1132 2.8427 1.3805 42 1 8.5881 7.5884 3.5004 43 1 10.0148 8.2206 0.9079 44 1 9.7961 8.4438 -1.4903 45 1 9.0959 7.1323 -2.4691 46 1 11.6205 6.2880 -1.5259 47 1 14.5427 5.8929 -3.0852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691911119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:26 Heat of formation + Delta-G solvation = -96.472224 kcal Electronic energy + Delta-G solvation = -28137.128277 eV Core-core repulsion = 23933.753804 eV Total energy + Delta-G solvation = -4203.374473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44501 -40.92583 -39.01054 -38.80260 -37.19946 -36.11348 -35.48102 -34.63889 -33.16402 -32.39008 -29.96570 -28.27282 -28.19248 -27.76982 -26.22535 -25.25257 -24.12782 -22.96444 -22.06204 -20.98145 -19.97739 -19.42698 -18.79190 -18.44670 -17.47214 -17.16593 -16.96873 -16.92379 -16.60076 -16.51828 -16.41154 -15.92967 -15.68266 -15.38628 -15.11169 -14.85660 -14.75222 -14.34889 -14.15749 -14.10603 -13.91457 -13.54392 -13.18861 -13.11533 -12.97306 -12.93951 -12.76174 -12.42300 -12.13106 -12.07310 -11.97985 -11.84159 -11.79504 -11.64325 -11.51936 -11.01772 -10.96639 -10.56018 -10.55045 -10.43182 -10.20862 -9.09276 -7.97400 -5.29223 -0.40316 -0.21325 1.49147 1.51293 1.59768 1.63508 1.89104 2.22848 2.43478 2.59390 2.75219 2.97291 3.12435 3.37928 3.66574 3.79527 3.89766 3.92143 4.08056 4.10532 4.12726 4.19739 4.27626 4.47278 4.50571 4.51831 4.52765 4.59304 4.62420 4.68397 4.75548 4.79248 4.89578 4.90122 4.95666 5.10261 5.12417 5.22486 5.35704 5.48315 5.49390 5.81830 6.21007 6.30469 6.45308 6.51295 6.89218 7.20359 7.28250 7.95954 8.20364 9.26039 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.002032 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.554956 B =13777.524421 C =15361.645210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.067 3.933 4 C -0.074 4.074 5 H 0.064 0.936 6 C -0.147 4.147 7 C -0.124 4.124 8 C 0.515 3.485 9 O -0.573 6.573 10 N -0.711 5.711 11 C 0.201 3.799 12 C 0.318 3.682 13 N -0.536 5.536 14 C 0.365 3.635 15 O -0.474 6.474 16 C -0.212 4.212 17 C 0.182 3.818 18 C 0.198 3.802 19 N -0.737 5.737 20 C -0.245 4.245 21 H 0.088 0.912 22 C -0.076 4.076 23 N -0.971 5.971 24 Si 0.980 3.020 25 H -0.284 1.284 26 H -0.300 1.300 27 H -0.265 1.265 28 N -0.515 5.515 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.431 0.569 43 H 0.174 0.826 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.370 0.630 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.885 -1.041 10.907 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.010 4.010 4 C -0.093 4.093 5 H 0.083 0.917 6 C -0.204 4.204 7 C -0.164 4.164 8 C 0.303 3.697 9 O -0.452 6.452 10 N -0.364 5.364 11 C 0.075 3.925 12 C 0.049 3.951 13 N -0.263 5.263 14 C 0.176 3.824 15 O -0.285 6.285 16 C -0.236 4.236 17 C 0.038 3.962 18 C 0.072 3.928 19 N -0.380 5.380 20 C -0.376 4.376 21 H 0.106 0.894 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.808 3.192 25 H -0.210 1.210 26 H -0.227 1.227 27 H -0.190 1.190 28 N -0.232 5.232 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.249 0.751 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.295 0.705 43 H 0.192 0.808 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.201 0.799 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -27.273 -2.934 10.698 29.443 hybrid contribution 0.916 1.405 -0.334 1.710 sum -26.357 -1.530 10.364 28.363 Atomic orbital electron populations 1.22897 0.79596 1.03559 1.00941 1.87856 1.21311 1.29088 1.95626 1.22631 0.92186 0.84448 1.01700 1.20780 0.93519 0.95566 0.99393 0.91726 1.21838 1.01362 1.00672 0.96569 1.21652 0.88604 0.98931 1.07191 1.21224 0.90740 0.83117 0.74595 1.90708 1.75865 1.27664 1.51002 1.45737 1.05376 1.10326 1.74993 1.19686 0.81016 0.88111 1.03648 1.22854 0.93433 0.96354 0.82439 1.67763 1.17327 1.13225 1.27937 1.19437 0.89463 0.87527 0.85931 1.84730 1.45610 1.69917 1.28275 1.23071 1.03920 1.04731 0.91870 1.21912 0.89137 0.89200 0.95945 1.19778 0.86962 0.96130 0.89954 1.42359 1.13944 1.51367 1.30377 1.19670 0.97655 1.18623 1.01664 0.89420 1.25663 0.98296 1.00294 1.02534 1.69847 1.13760 1.36482 1.42086 0.85055 0.78127 0.76946 0.79070 1.21049 1.22692 1.18991 1.68119 1.12713 1.08779 1.33589 0.93101 0.89165 0.92963 0.91393 0.91678 0.93203 0.92166 0.93168 0.85459 0.85997 0.75087 0.89936 0.88877 0.70506 0.80805 0.91453 0.93691 0.79871 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.21 10.24 -148.98 -1.53 -8.74 16 3 C 0.07 0.83 5.32 71.98 0.38 1.21 16 4 C -0.07 -1.22 2.27 -10.80 -0.02 -1.24 16 5 H 0.06 1.37 7.96 -2.38 -0.02 1.35 16 6 C -0.15 -3.01 8.83 71.98 0.64 -2.37 16 7 C -0.12 -1.50 5.17 29.85 0.15 -1.35 16 8 C 0.51 10.85 7.55 87.66 0.66 11.51 16 9 O -0.57 -17.26 13.97 -3.04 -0.04 -17.30 16 10 N -0.71 -14.16 5.55 -466.80 -2.59 -16.75 16 11 C 0.20 5.29 6.10 85.63 0.52 5.81 16 12 C 0.32 9.28 7.01 138.76 0.97 10.25 16 13 N -0.54 -14.87 10.36 -300.69 -3.12 -17.98 16 14 C 0.36 9.26 7.83 84.83 0.66 9.93 16 15 O -0.47 -9.17 13.58 -88.27 -1.20 -10.36 16 16 C -0.21 -5.75 9.79 22.54 0.22 -5.53 16 17 C 0.18 6.02 6.18 42.44 0.26 6.28 16 18 C 0.20 7.43 6.61 85.63 0.57 8.00 16 19 N -0.74 -36.83 5.59 -347.17 -1.94 -38.77 16 20 C -0.24 -13.27 9.99 84.04 0.84 -12.43 16 21 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 24 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 N -0.52 -17.28 10.27 -176.24 -1.81 -19.09 16 29 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 1.09 7.82 -2.39 -0.02 1.07 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 1.30 5.95 -2.39 -0.01 1.29 16 37 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.41 6.14 8.46 -92.71 -0.78 5.36 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.43 2.91 9.06 -74.06 -0.67 2.24 16 43 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.07 2.22 8.06 -2.38 -0.02 2.20 16 45 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.37 20.52 7.66 -92.71 -0.71 19.81 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -78.47 401.40 -3.49 -81.95 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -1.15 Total: 31.48 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 7.57 Total: 27.75 kcal Atomic # 7 Polarization: -143.07 SS G_CDS: -9.17 Total: -152.25 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -2.77 Total: -36.41 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -78.47 -3.49 -81.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691911119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.518 kcal (2) G-P(sol) polarization free energy of solvation -78.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds