Wall clock time and date at job start Tue Mar 31 2020 22:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46785 * 2 1 4 4 N 1.46502 * 109.47366 * 240.00279 * 2 1 3 5 5 C 1.34776 * 120.00046 * 85.00230 * 4 2 1 6 6 O 1.21281 * 119.99790 * 354.89186 * 5 4 2 7 7 C 1.50702 * 119.99778 * 174.90297 * 5 4 2 8 8 C 1.50696 * 115.54588 * 293.90227 * 7 5 4 9 9 N 1.34779 * 120.00444 * 279.03776 * 8 7 5 10 10 O 1.21288 * 119.99724 * 99.04344 * 8 7 5 11 11 C 1.53000 * 117.51832 * 79.60859 * 7 5 4 12 12 C 1.53002 * 117.49611 * 148.23907 * 7 5 4 13 13 C 1.52999 * 109.47321 * 119.99937 * 2 1 3 14 14 C 1.53936 * 113.73464 * 281.87304 * 13 2 1 15 15 N 1.47955 * 86.17935 * 221.91882 * 14 13 2 16 16 C 1.46899 * 111.00633 * 137.58253 * 15 14 13 17 17 C 1.50700 * 109.47430 * 90.63260 * 16 15 14 18 18 O 1.21293 * 119.99670 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00061 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99959 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99862 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00045 * 179.97438 * 20 19 17 23 23 N 1.31420 * 120.00058 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00002 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47149 * 90.00281 * 24 22 20 26 26 H 1.48503 * 109.47074 * 210.00183 * 24 22 20 27 27 H 1.48494 * 109.47256 * 329.99824 * 24 22 20 28 28 C 1.47960 * 90.76552 * 24.68677 * 15 14 13 29 29 H 1.09006 * 109.46968 * 64.80388 * 1 2 3 30 30 H 1.08998 * 109.47224 * 184.80140 * 1 2 3 31 31 H 1.09001 * 109.47852 * 304.80246 * 1 2 3 32 32 H 0.97003 * 119.99668 * 265.00041 * 4 2 1 33 33 H 0.96998 * 120.00409 * 175.02687 * 9 8 7 34 34 H 0.96998 * 119.99531 * 354.76285 * 9 8 7 35 35 H 1.09002 * 117.49270 * 214.97087 * 11 7 5 36 36 H 1.08988 * 117.49994 * 359.97438 * 11 7 5 37 37 H 1.08997 * 117.49933 * 359.97170 * 12 7 5 38 38 H 1.08999 * 117.49700 * 144.99283 * 12 7 5 39 39 H 1.09007 * 112.93676 * 53.56971 * 13 2 1 40 40 H 1.09004 * 113.75882 * 336.22995 * 14 13 2 41 41 H 1.08998 * 113.76498 * 107.59858 * 14 13 2 42 42 H 1.09000 * 109.47263 * 210.64199 * 16 15 14 43 43 H 1.09005 * 109.46660 * 330.64055 * 16 15 14 44 44 H 0.96994 * 120.00183 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99945 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.75889 * 220.99990 * 28 15 14 47 47 H 1.08995 * 113.75684 * 89.63139 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.7723 1.1326 -2.4362 7 6 2.7568 -0.6962 -3.5570 8 6 4.2139 -1.0582 -3.4283 9 7 5.1616 -0.1220 -3.6332 10 8 4.5339 -2.1921 -3.1404 11 6 1.8634 -1.6386 -4.3661 12 6 2.2530 -0.2742 -4.9387 13 6 2.0400 -0.7212 1.2492 14 6 1.9732 0.1326 2.5283 15 7 3.3084 -0.4190 2.8476 16 6 4.1988 0.6261 3.3699 17 6 4.0795 0.6839 4.8711 18 8 3.3270 -0.0717 5.4490 19 7 4.8088 1.5750 5.5713 20 6 4.7006 1.6271 6.9370 21 1 4.0305 0.9543 7.4517 22 6 5.4529 2.5455 7.6590 23 7 5.3487 2.5958 8.9681 24 14 6.6123 3.7087 6.7689 25 1 5.8873 4.9553 6.4149 26 1 7.7592 4.0371 7.6532 27 1 7.1121 3.0582 5.5311 28 6 3.5697 -0.6700 1.4131 29 1 -0.3633 0.4375 -0.9299 30 1 -0.3633 -1.0240 0.0860 31 1 -0.3635 0.5865 0.8438 32 1 2.2491 -1.6317 -1.1526 33 1 6.0954 -0.3355 -3.4802 34 1 4.9101 0.7641 -3.9373 35 1 2.3298 -2.5205 -4.8054 36 1 0.8347 -1.7686 -4.0305 37 1 1.4803 0.4935 -4.9798 38 1 2.9755 -0.2585 -5.7546 39 1 1.6196 -1.7203 1.3644 40 1 1.9753 1.2063 2.3402 41 1 1.1924 -0.1771 3.2229 42 1 5.2285 0.3966 3.0958 43 1 3.9160 1.5896 2.9457 44 1 5.4108 2.1790 5.1091 45 1 5.8742 3.2367 9.4721 46 1 4.0644 -1.6212 1.2167 47 1 4.0386 0.1688 0.8988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700542680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:13 Heat of formation + Delta-G solvation = -41.516773 kcal Electronic energy + Delta-G solvation = -29316.634426 eV Core-core repulsion = 25115.643000 eV Total energy + Delta-G solvation = -4200.991426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20299 -40.28402 -39.18745 -37.96357 -36.62028 -35.48709 -34.07400 -33.90907 -31.79925 -31.53443 -29.64002 -26.47296 -25.89071 -25.79188 -24.07204 -23.08677 -22.75715 -21.32522 -20.43491 -19.63450 -19.33680 -18.58946 -18.22129 -17.45491 -16.86276 -16.47006 -16.04847 -15.69784 -15.59599 -15.43395 -14.95799 -14.79210 -14.63639 -14.39749 -14.14768 -13.63709 -13.58454 -13.37097 -13.00079 -12.75526 -12.65408 -12.47324 -12.24324 -12.18466 -12.05708 -11.73747 -11.43978 -11.29580 -11.18665 -11.00843 -10.92436 -10.65815 -10.58660 -10.57693 -10.21931 -10.11239 -9.95527 -9.54118 -9.47500 -8.80511 -8.27563 -8.15120 -6.28816 -3.80005 1.80357 2.16950 2.57526 2.75957 3.03432 3.07282 3.15535 3.22891 3.76316 3.83788 4.06371 4.10159 4.11762 4.20989 4.30247 4.39234 4.44705 4.73873 4.91294 4.95660 5.03423 5.08413 5.13781 5.19571 5.22965 5.33620 5.35179 5.44756 5.47886 5.55603 5.56986 5.64875 5.67496 5.85951 5.94613 5.96240 6.09423 6.20075 6.22372 6.48831 6.74651 7.06480 7.09243 7.60687 7.67594 7.75983 8.16852 8.63185 8.98064 9.45132 9.87240 10.84505 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002257 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.514220 B =12404.612249 C =13085.228474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.560 3.440 6 O -0.528 6.528 7 C -0.201 4.201 8 C 0.563 3.437 9 N -0.845 5.845 10 O -0.527 6.527 11 C -0.128 4.128 12 C -0.133 4.133 13 C -0.127 4.127 14 C 0.023 3.977 15 N -0.447 5.447 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.556 6.556 19 N -0.595 5.595 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.005 3.995 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.407 0.593 34 H 0.406 0.594 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.089 0.911 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -3.872 -31.735 32.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.362 5.362 5 C 0.344 3.656 6 O -0.403 6.403 7 C -0.207 4.207 8 C 0.345 3.655 9 N -0.409 5.409 10 O -0.402 6.402 11 C -0.166 4.166 12 C -0.170 4.170 13 C -0.146 4.146 14 C -0.106 4.106 15 N -0.169 5.169 16 C -0.125 4.125 17 C 0.241 3.759 18 O -0.437 6.437 19 N -0.235 5.235 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.124 4.124 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.238 0.762 34 H 0.235 0.765 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.330 -4.751 -30.448 31.274 hybrid contribution 1.597 1.748 -1.005 2.572 sum -3.733 -3.003 -31.453 31.816 Atomic orbital electron populations 1.22138 0.94551 1.02512 1.02769 1.21126 0.94657 0.96875 0.82717 0.89400 1.46028 1.66467 1.14510 1.09209 1.18914 0.78209 0.85833 0.82679 1.90738 1.49174 1.17044 1.83394 1.21472 0.94247 1.09863 0.95126 1.19035 0.85690 0.84761 0.75987 1.43779 1.10234 1.16036 1.70804 1.90797 1.82495 1.19979 1.46952 1.23091 0.99427 0.94597 0.99465 1.23122 1.03340 0.98923 0.91659 1.23364 0.96471 1.01159 0.93610 1.23940 0.94609 0.97360 0.94721 1.68380 1.01797 1.33280 1.13454 1.22523 0.98967 0.94671 0.96367 1.19582 0.84703 0.83888 0.87708 1.90562 1.40017 1.42430 1.70691 1.42228 1.39661 1.33699 1.07898 1.19425 1.24726 1.19394 0.79617 0.86313 1.25033 0.97950 0.97814 0.95448 1.69625 1.41124 1.36430 1.05136 0.86673 0.81389 0.81669 0.79659 1.19685 1.20184 1.19569 1.23976 0.95658 1.02191 0.90557 0.92098 0.92151 0.91055 0.75885 0.76160 0.76517 0.86912 0.87139 0.86632 0.87343 0.87453 0.91208 0.88510 0.89389 0.92378 0.79827 0.91666 0.89229 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.43 37.16 0.35 -1.03 16 2 C 0.15 1.39 2.25 -67.93 -0.15 1.23 16 3 H 0.09 0.95 7.56 -51.93 -0.39 0.55 16 4 N -0.71 -5.98 4.94 -53.80 -0.27 -6.25 16 5 C 0.56 5.19 7.02 -10.98 -0.08 5.12 16 6 O -0.53 -6.42 16.36 5.56 0.09 -6.33 16 7 C -0.20 -1.44 2.25 -156.81 -0.35 -1.79 16 8 C 0.56 4.63 7.24 -10.99 -0.08 4.55 16 9 N -0.84 -4.48 8.87 31.22 0.28 -4.20 16 10 O -0.53 -6.14 17.85 5.55 0.10 -6.04 16 11 C -0.13 -0.69 9.87 -26.73 -0.26 -0.96 16 12 C -0.13 -0.67 9.76 -26.73 -0.26 -0.93 16 13 C -0.13 -1.29 3.35 -89.69 -0.30 -1.59 16 14 C 0.02 0.31 7.46 -2.77 -0.02 0.29 16 15 N -0.45 -7.11 5.65 -239.76 -1.35 -8.47 16 16 C 0.01 0.12 5.28 -4.98 -0.03 0.09 16 17 C 0.46 10.65 7.83 -10.99 -0.09 10.56 16 18 O -0.56 -15.40 16.01 5.55 0.09 -15.31 16 19 N -0.59 -14.49 5.09 -10.96 -0.06 -14.54 16 20 C -0.30 -8.71 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 22 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 23 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 24 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 28 C 0.01 0.06 7.39 -2.77 -0.02 0.04 16 29 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 3.06 8.61 -40.82 -0.35 2.71 16 33 H 0.41 1.76 8.93 -40.82 -0.36 1.39 16 34 H 0.41 1.42 8.83 -40.82 -0.36 1.06 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.11 0.52 8.14 -51.94 -0.42 0.09 16 37 H 0.12 0.63 8.01 -51.93 -0.42 0.21 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 1.05 8.14 -51.92 -0.42 0.62 16 40 H 0.07 0.88 7.37 -51.93 -0.38 0.50 16 41 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 43 H 0.06 0.86 7.38 -51.93 -0.38 0.48 16 44 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -37.40 399.29 -7.65 -45.05 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.07 Total: 12.75 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.54 Total: 7.74 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.62 Total: -58.79 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: 0.28 Total: -27.68 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.40 -7.65 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700542680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.537 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds