Wall clock time and date at job start Tue Mar 31 2020 22:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46785 * 2 1 4 4 N 1.46502 * 109.47366 * 240.00279 * 2 1 3 5 5 C 1.34776 * 120.00046 * 85.00230 * 4 2 1 6 6 O 1.21281 * 119.99790 * 354.89186 * 5 4 2 7 7 C 1.50702 * 119.99778 * 174.90297 * 5 4 2 8 8 C 1.50696 * 115.54588 * 293.90227 * 7 5 4 9 9 N 1.34779 * 120.00444 * 279.03776 * 8 7 5 10 10 O 1.21288 * 119.99724 * 99.04344 * 8 7 5 11 11 C 1.53000 * 117.51832 * 79.60859 * 7 5 4 12 12 C 1.53002 * 117.49611 * 148.23907 * 7 5 4 13 13 C 1.52999 * 109.47321 * 119.99937 * 2 1 3 14 14 C 1.53936 * 113.73464 * 281.87304 * 13 2 1 15 15 N 1.47955 * 86.17935 * 221.91882 * 14 13 2 16 16 C 1.46899 * 111.00633 * 137.58253 * 15 14 13 17 17 C 1.50700 * 109.47430 * 90.63260 * 16 15 14 18 18 O 1.21293 * 119.99670 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00061 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99959 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99862 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00045 * 179.97438 * 20 19 17 23 23 N 1.31420 * 120.00058 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00002 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47149 * 90.00281 * 24 22 20 26 26 H 1.48503 * 109.47074 * 210.00183 * 24 22 20 27 27 H 1.48494 * 109.47256 * 329.99824 * 24 22 20 28 28 C 1.47960 * 90.76552 * 24.68677 * 15 14 13 29 29 H 1.09006 * 109.46968 * 64.80388 * 1 2 3 30 30 H 1.08998 * 109.47224 * 184.80140 * 1 2 3 31 31 H 1.09001 * 109.47852 * 304.80246 * 1 2 3 32 32 H 0.97003 * 119.99668 * 265.00041 * 4 2 1 33 33 H 0.96998 * 120.00409 * 175.02687 * 9 8 7 34 34 H 0.96998 * 119.99531 * 354.76285 * 9 8 7 35 35 H 1.09002 * 117.49270 * 214.97087 * 11 7 5 36 36 H 1.08988 * 117.49994 * 359.97438 * 11 7 5 37 37 H 1.08997 * 117.49933 * 359.97170 * 12 7 5 38 38 H 1.08999 * 117.49700 * 144.99283 * 12 7 5 39 39 H 1.09007 * 112.93676 * 53.56971 * 13 2 1 40 40 H 1.09004 * 113.75882 * 336.22995 * 14 13 2 41 41 H 1.08998 * 113.76498 * 107.59858 * 14 13 2 42 42 H 1.09000 * 109.47263 * 210.64199 * 16 15 14 43 43 H 1.09005 * 109.46660 * 330.64055 * 16 15 14 44 44 H 0.96994 * 120.00183 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99945 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.75889 * 220.99990 * 28 15 14 47 47 H 1.08995 * 113.75684 * 89.63139 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.7723 1.1326 -2.4362 7 6 2.7568 -0.6962 -3.5570 8 6 4.2139 -1.0582 -3.4283 9 7 5.1616 -0.1220 -3.6332 10 8 4.5339 -2.1921 -3.1404 11 6 1.8634 -1.6386 -4.3661 12 6 2.2530 -0.2742 -4.9387 13 6 2.0400 -0.7212 1.2492 14 6 1.9732 0.1326 2.5283 15 7 3.3084 -0.4190 2.8476 16 6 4.1988 0.6261 3.3699 17 6 4.0795 0.6839 4.8711 18 8 3.3270 -0.0717 5.4490 19 7 4.8088 1.5750 5.5713 20 6 4.7006 1.6271 6.9370 21 1 4.0305 0.9543 7.4517 22 6 5.4529 2.5455 7.6590 23 7 5.3487 2.5958 8.9681 24 14 6.6123 3.7087 6.7689 25 1 5.8873 4.9553 6.4149 26 1 7.7592 4.0371 7.6532 27 1 7.1121 3.0582 5.5311 28 6 3.5697 -0.6700 1.4131 29 1 -0.3633 0.4375 -0.9299 30 1 -0.3633 -1.0240 0.0860 31 1 -0.3635 0.5865 0.8438 32 1 2.2491 -1.6317 -1.1526 33 1 6.0954 -0.3355 -3.4802 34 1 4.9101 0.7641 -3.9373 35 1 2.3298 -2.5205 -4.8054 36 1 0.8347 -1.7686 -4.0305 37 1 1.4803 0.4935 -4.9798 38 1 2.9755 -0.2585 -5.7546 39 1 1.6196 -1.7203 1.3644 40 1 1.9753 1.2063 2.3402 41 1 1.1924 -0.1771 3.2229 42 1 5.2285 0.3966 3.0958 43 1 3.9160 1.5896 2.9457 44 1 5.4108 2.1790 5.1091 45 1 5.8742 3.2367 9.4721 46 1 4.0644 -1.6212 1.2167 47 1 4.0386 0.1688 0.8988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700542680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:13 Heat of formation + Delta-G solvation = -75.562520 kcal Electronic energy + Delta-G solvation = -29318.110761 eV Core-core repulsion = 25115.643000 eV Total energy + Delta-G solvation = -4202.467760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90929 -41.27315 -40.08886 -39.61325 -37.20491 -36.33757 -35.94229 -34.60722 -33.77756 -32.59466 -30.77133 -27.54469 -27.20740 -26.57288 -25.47733 -23.71027 -23.39889 -22.19170 -21.25896 -21.21427 -20.41046 -20.19965 -19.12703 -17.97895 -17.86132 -17.56371 -17.08501 -16.85884 -16.76051 -16.39080 -16.12724 -16.03441 -15.52034 -15.31038 -15.13206 -14.92513 -14.78928 -14.42862 -14.27059 -14.06277 -13.98110 -13.72878 -13.43276 -13.06666 -12.95020 -12.60366 -12.49679 -12.43203 -12.26059 -12.05288 -11.97701 -11.88661 -11.67075 -11.64690 -11.51967 -11.20334 -10.82570 -10.74675 -10.48057 -10.26019 -10.22089 -9.65822 -8.42523 -6.03469 1.16489 1.28199 1.33726 1.42725 1.52635 1.94318 1.95988 2.21445 2.28601 2.59675 2.72391 3.12792 3.17734 3.34087 3.54209 3.62838 3.67014 3.78935 3.88312 4.03309 4.10851 4.16580 4.25472 4.34288 4.39737 4.43684 4.47240 4.58676 4.66925 4.72170 4.76218 4.81272 4.87934 4.95847 5.10877 5.16465 5.29203 5.38687 5.43388 5.52326 5.77622 5.89346 6.00853 6.28459 6.41739 6.58555 6.87130 7.07081 7.18791 7.38406 7.96331 8.75293 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002257 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.514220 B =12404.612249 C =13085.228474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.077 0.923 4 N -0.705 5.705 5 C 0.562 3.438 6 O -0.558 6.558 7 C -0.212 4.212 8 C 0.563 3.437 9 N -0.830 5.830 10 O -0.567 6.567 11 C -0.123 4.123 12 C -0.119 4.119 13 C -0.103 4.103 14 C 0.016 3.984 15 N -0.485 5.485 16 C 0.019 3.981 17 C 0.453 3.547 18 O -0.609 6.609 19 N -0.594 5.594 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.233 1.233 28 C 0.014 3.986 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.412 0.588 33 H 0.413 0.587 34 H 0.416 0.584 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.095 0.905 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 -2.693 -35.536 35.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.095 0.905 4 N -0.355 5.355 5 C 0.347 3.653 6 O -0.436 6.436 7 C -0.219 4.219 8 C 0.346 3.654 9 N -0.394 5.394 10 O -0.445 6.445 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.123 4.123 14 C -0.113 4.113 15 N -0.208 5.208 16 C -0.112 4.112 17 C 0.240 3.760 18 O -0.492 6.492 19 N -0.236 5.236 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.156 1.156 28 C -0.114 4.114 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.107 0.893 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.878 -3.566 -34.292 34.694 hybrid contribution 1.051 1.302 0.235 1.690 sum -2.828 -2.264 -34.056 34.249 Atomic orbital electron populations 1.22097 0.93994 1.03125 1.02362 1.20943 0.94982 0.96117 0.82520 0.90470 1.45971 1.66017 1.14717 1.08834 1.19181 0.77616 0.85404 0.83116 1.90725 1.50614 1.18380 1.83930 1.21370 0.93874 1.11448 0.95187 1.19171 0.86296 0.84469 0.75480 1.43710 1.10241 1.16017 1.69421 1.90780 1.83097 1.21579 1.49041 1.23189 0.99391 0.94847 0.98604 1.23228 1.03232 0.98484 0.90715 1.23155 0.95686 1.00860 0.92552 1.23973 0.93117 0.98394 0.95808 1.68329 1.02666 1.33508 1.16289 1.22453 1.00969 0.96898 0.90903 1.20883 0.82617 0.81945 0.90518 1.90536 1.41866 1.44180 1.72651 1.42063 1.40620 1.34711 1.06226 1.18994 1.25146 1.19653 0.81936 0.92807 1.26130 0.99627 0.99472 0.96249 1.69809 1.42475 1.37687 1.07565 0.85354 0.78026 0.78682 0.79382 1.18051 1.19902 1.15619 1.24011 0.96593 1.02958 0.87824 0.92795 0.91119 0.91091 0.75175 0.75480 0.75307 0.86564 0.86470 0.86859 0.85493 0.86777 0.90244 0.90607 0.86838 0.89318 0.77581 0.91130 0.88638 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.43 71.98 0.68 -1.78 16 2 C 0.16 2.63 2.25 44.99 0.10 2.73 16 3 H 0.08 1.51 7.56 -2.38 -0.02 1.49 16 4 N -0.70 -10.45 4.94 -442.53 -2.19 -12.63 16 5 C 0.56 9.38 7.02 87.66 0.62 9.99 16 6 O -0.56 -12.69 16.36 -3.03 -0.05 -12.74 16 7 C -0.21 -2.61 2.25 -53.67 -0.12 -2.73 16 8 C 0.56 8.15 7.24 87.66 0.63 8.78 16 9 N -0.83 -6.90 8.87 -173.53 -1.54 -8.44 16 10 O -0.57 -12.39 17.85 -3.05 -0.05 -12.45 16 11 C -0.12 -1.07 9.87 30.60 0.30 -0.76 16 12 C -0.12 -0.92 9.76 30.60 0.30 -0.62 16 13 C -0.10 -1.92 3.35 -10.15 -0.03 -1.95 16 14 C 0.02 0.42 7.46 86.41 0.64 1.07 16 15 N -0.49 -14.73 5.65 -912.47 -5.15 -19.89 16 16 C 0.02 0.62 5.28 85.56 0.45 1.07 16 17 C 0.45 21.22 7.83 87.66 0.69 21.91 16 18 O -0.61 -35.13 16.01 -3.07 -0.05 -35.18 16 19 N -0.59 -28.81 5.09 -306.99 -1.56 -30.37 16 20 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 21 H 0.05 3.84 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 23 N -0.93 -57.10 13.96 21.66 0.30 -56.80 16 24 Si 0.97 39.32 27.74 68.60 1.90 41.22 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 28 C 0.01 0.30 7.39 86.40 0.64 0.94 16 29 H 0.05 0.94 8.08 -2.38 -0.02 0.92 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.41 5.34 8.61 -92.71 -0.80 4.55 16 33 H 0.41 2.66 8.93 -92.71 -0.83 1.83 16 34 H 0.42 1.86 8.83 -92.71 -0.82 1.04 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.98 8.01 -2.39 -0.02 0.96 16 38 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.08 1.88 7.37 -2.39 -0.02 1.86 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.11 3.06 8.08 -2.39 -0.02 3.04 16 43 H 0.09 2.31 7.38 -2.38 -0.02 2.29 16 44 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 1.46 7.88 -2.39 -0.02 1.45 16 Total: -1.00 -87.11 399.29 -4.17 -91.28 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -1.99 Total: 36.61 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.22 Total: 19.40 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -10.14 Total: -128.14 kcal Atomic # 8 Polarization: -60.21 SS G_CDS: -0.15 Total: -60.37 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.22 kcal Total: -87.11 -4.17 -91.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700542680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.714 kcal (2) G-P(sol) polarization free energy of solvation -87.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds