Wall clock time and date at job start Tue Mar 31 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 5 5 C 1.34778 * 119.99771 * 274.99826 * 4 2 1 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99935 * 180.02562 * 5 4 2 8 8 H 1.08999 * 110.21845 * 40.69991 * 7 5 4 9 9 C 1.54482 * 110.24625 * 278.77395 * 7 5 4 10 10 C 1.54865 * 101.65758 * 266.38930 * 9 7 5 11 11 C 1.51279 * 104.20993 * 335.19261 * 10 9 7 12 12 O 1.21285 * 124.93861 * 196.24422 * 11 10 9 13 13 N 1.34421 * 110.11555 * 16.26404 * 11 10 9 14 14 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 15 15 C 1.53937 * 113.73032 * 158.76402 * 14 2 1 16 16 N 1.48192 * 86.10165 * 221.95851 * 15 14 2 17 17 C 1.46901 * 111.06470 * 137.52184 * 16 15 14 18 18 C 1.50707 * 109.46840 * 90.57282 * 17 16 15 19 19 O 1.21290 * 119.99780 * 359.97438 * 18 17 16 20 20 N 1.34768 * 119.99711 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99789 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99896 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00003 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00265 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99899 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46905 * 90.00289 * 25 23 21 27 27 H 1.48503 * 109.47153 * 209.99937 * 25 23 21 28 28 H 1.48496 * 109.47372 * 330.00404 * 25 23 21 29 29 C 1.47956 * 90.79426 * 24.60378 * 16 15 14 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 0.96998 * 120.00630 * 95.00428 * 4 2 1 34 34 H 1.08996 * 110.97020 * 24.53031 * 9 7 5 35 35 H 1.08997 * 110.97192 * 148.29730 * 9 7 5 36 36 H 1.08998 * 110.46436 * 216.51000 * 10 9 7 37 37 H 1.08999 * 110.60061 * 93.93713 * 10 9 7 38 38 H 0.96994 * 124.34582 * 180.38512 * 13 11 10 39 39 H 1.08993 * 112.94039 * 290.33717 * 14 2 1 40 40 H 1.08993 * 113.76504 * 336.24558 * 15 14 2 41 41 H 1.09006 * 113.75634 * 107.60643 * 15 14 2 42 42 H 1.08998 * 109.46698 * 210.56604 * 17 16 15 43 43 H 1.08994 * 109.47802 * 330.57260 * 17 16 15 44 44 H 0.97004 * 120.00714 * 359.97438 * 20 18 17 45 45 H 0.96999 * 120.00303 * 179.97438 * 24 23 21 46 46 H 1.09003 * 113.75522 * 221.07798 * 29 16 15 47 47 H 1.08998 * 113.76028 * 89.72081 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 1 3.4657 -1.4025 3.3264 9 6 1.5012 -1.5144 4.2580 10 6 0.9886 -0.4907 5.3009 11 6 2.1809 0.4035 5.5605 12 8 2.2936 1.1536 6.5069 13 7 3.0970 0.2461 4.5895 14 6 2.0401 -0.7213 -1.2492 15 6 3.4850 -0.3524 -1.6310 16 7 2.9995 -0.3204 -3.0308 17 6 3.5501 0.8335 -3.7543 18 6 4.8448 0.4393 -4.4175 19 8 5.2674 -0.6913 -4.2986 20 7 5.5329 1.3432 -5.1426 21 6 6.7109 0.9849 -5.7454 22 1 7.0876 -0.0216 -5.6389 23 6 7.4202 1.9166 -6.4935 24 7 8.5491 1.5730 -7.0718 25 14 6.7681 3.6574 -6.6783 26 1 7.2992 4.5040 -5.5799 27 1 7.2025 4.2125 -7.9854 28 1 5.2846 3.6395 -6.6164 29 6 1.6209 -0.0475 -2.5682 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1527 34 1 0.7229 -1.7601 3.5356 35 1 1.8767 -2.4140 4.7457 36 1 0.6859 -0.9985 6.2166 37 1 0.1590 0.0880 4.8946 38 1 3.9445 0.7165 4.5553 39 1 1.8528 -1.7948 -1.2261 40 1 3.8043 0.6193 -1.2546 41 1 4.2073 -1.1446 -1.4335 42 1 2.8384 1.1602 -4.5124 43 1 3.7341 1.6478 -3.0536 44 1 5.1947 2.2474 -5.2380 45 1 9.0440 2.2234 -7.5942 46 1 0.8564 -0.5964 -3.1182 47 1 1.3938 1.0137 -2.4664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700556473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:27 Heat of formation + Delta-G solvation = -61.845983 kcal Electronic energy + Delta-G solvation = -29010.248446 eV Core-core repulsion = 24808.375480 eV Total energy + Delta-G solvation = -4201.872967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36349 -40.40564 -39.22848 -37.98637 -36.60925 -35.55291 -33.94324 -32.12029 -31.73401 -31.58497 -29.75456 -28.42959 -26.39413 -25.70766 -24.27120 -23.44774 -21.90844 -21.03037 -20.85498 -19.83476 -19.37285 -18.43365 -17.96848 -17.88712 -16.79666 -16.17223 -16.11281 -15.58586 -15.31010 -15.25720 -15.00038 -14.90482 -14.50213 -14.09761 -14.06645 -13.90206 -13.61465 -13.35238 -13.22200 -13.17981 -12.84882 -12.70587 -12.55642 -12.22694 -12.10708 -11.99712 -11.87316 -11.57144 -11.21969 -11.10870 -10.85075 -10.79792 -10.62182 -10.60493 -10.28791 -9.98239 -9.56854 -9.52798 -9.47463 -8.84828 -8.31681 -8.18026 -6.31512 -3.82869 2.06080 2.16816 2.55338 3.00751 3.01637 3.05820 3.14203 3.72383 3.77043 3.79074 3.84164 4.05565 4.09598 4.20036 4.31929 4.39311 4.55264 4.66731 4.78683 4.87387 5.00962 5.05891 5.07687 5.13367 5.18678 5.25489 5.29135 5.29941 5.37492 5.49754 5.51533 5.58076 5.61864 5.77654 5.87492 5.91886 5.98735 6.16048 6.25896 6.43200 6.54949 7.00926 7.04781 7.57757 7.74384 7.83539 8.13816 8.60162 8.95106 9.42265 9.83923 10.81702 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002048 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.349919 B =13669.174726 C =14370.111927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.718 5.718 5 C 0.499 3.501 6 O -0.526 6.526 7 C 0.112 3.888 8 H 0.116 0.884 9 C -0.119 4.119 10 C -0.158 4.158 11 C 0.528 3.472 12 O -0.530 6.530 13 N -0.709 5.709 14 C -0.125 4.125 15 C 0.017 3.983 16 N -0.449 5.449 17 C 0.007 3.993 18 C 0.455 3.545 19 O -0.558 6.558 20 N -0.594 5.594 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.010 3.990 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.415 0.585 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.092 0.908 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.085 -6.079 20.413 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.370 5.370 5 C 0.283 3.717 6 O -0.400 6.400 7 C 0.002 3.998 8 H 0.134 0.866 9 C -0.157 4.157 10 C -0.198 4.198 11 C 0.314 3.686 12 O -0.406 6.406 13 N -0.365 5.365 14 C -0.144 4.144 15 C -0.112 4.112 16 N -0.171 5.171 17 C -0.125 4.125 18 C 0.240 3.760 19 O -0.439 6.439 20 N -0.234 5.234 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.120 4.120 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.255 0.745 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.715 -6.118 20.455 28.392 hybrid contribution 0.110 2.058 -0.214 2.072 sum -18.605 -4.060 20.242 27.791 Atomic orbital electron populations 1.22137 0.94802 1.02341 1.02682 1.21087 0.94280 0.97211 0.82915 0.89363 1.46052 1.67337 1.14237 1.09399 1.20999 0.78264 0.87762 0.84715 1.90759 1.48847 1.15729 1.84713 1.21585 0.99557 0.90776 0.87899 0.86644 1.22636 0.96742 0.97945 0.98420 1.22401 0.98001 0.97787 1.01585 1.20803 0.84520 0.82015 0.81257 1.90776 1.79192 1.39503 1.31152 1.45889 1.21601 1.45064 1.23903 1.23321 0.96927 1.01262 0.92917 1.24041 0.96072 1.01812 0.89296 1.68416 1.01754 1.35596 1.11323 1.22520 0.97715 0.93031 0.99281 1.19580 0.86161 0.86377 0.83836 1.90556 1.69784 1.20021 1.63507 1.42234 1.22452 1.11462 1.47252 1.19417 0.96105 1.00819 1.26911 0.86325 1.25037 0.95900 0.98387 0.96904 1.69618 1.14409 1.35290 1.32916 0.86677 0.78961 0.84872 0.78902 1.19678 1.20150 1.19531 1.23962 0.94218 0.99743 0.94042 0.92169 0.92224 0.91270 0.76267 0.88550 0.88338 0.87501 0.87470 0.74510 0.87584 0.91425 0.88925 0.89273 0.92367 0.79797 0.91633 0.88930 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.31 37.16 0.35 -0.71 16 2 C 0.15 1.12 2.38 -67.93 -0.16 0.96 16 3 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 4 N -0.72 -4.15 5.08 -53.80 -0.27 -4.42 16 5 C 0.50 3.82 6.97 -10.98 -0.08 3.74 16 6 O -0.53 -6.52 16.23 5.56 0.09 -6.43 16 7 C 0.11 0.54 3.92 -68.16 -0.27 0.27 16 8 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 9 C -0.12 -0.33 6.71 -24.97 -0.17 -0.50 16 10 C -0.16 -0.88 6.86 -26.62 -0.18 -1.06 16 11 C 0.53 5.15 8.43 -10.86 -0.09 5.06 16 12 O -0.53 -7.59 18.03 5.55 0.10 -7.48 16 13 N -0.71 -5.40 5.46 -53.88 -0.29 -5.70 16 14 C -0.12 -1.04 3.46 -89.69 -0.31 -1.35 16 15 C 0.02 0.20 7.53 -2.63 -0.02 0.18 16 16 N -0.45 -6.59 5.65 -239.50 -1.35 -7.95 16 17 C 0.01 0.11 5.28 -4.97 -0.03 0.08 16 18 C 0.46 10.35 7.83 -10.99 -0.09 10.26 16 19 O -0.56 -15.05 16.01 5.55 0.09 -14.96 16 20 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 21 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 25 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 29 C 0.01 0.10 6.65 -2.76 -0.02 0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.43 7.52 -51.93 -0.39 0.04 16 33 H 0.40 1.23 8.60 -40.82 -0.35 0.87 16 34 H 0.10 0.16 7.89 -51.93 -0.41 -0.25 16 35 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.42 3.02 8.96 -40.82 -0.37 2.66 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.84 7.33 -51.93 -0.38 0.45 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 43 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 44 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -39.46 390.75 -8.15 -47.61 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.09 Total: 8.75 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.31 Total: 9.27 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -1.20 Total: -57.37 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: 0.28 Total: -28.87 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.46 -8.15 -47.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700556473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.234 kcal (2) G-P(sol) polarization free energy of solvation -39.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds