Wall clock time and date at job start Tue Mar 31 2020 22:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35344 * 116.99982 * 2 1 4 4 C 1.39001 * 126.40506 * 90.33233 * 3 2 1 5 5 C 1.46923 * 126.49458 * 0.02562 * 4 3 2 6 6 O 1.21667 * 119.99948 * 47.63426 * 5 4 3 7 7 N 1.34780 * 119.99919 * 227.64179 * 5 4 3 8 8 C 1.47152 * 120.97974 * 355.40296 * 7 5 4 9 9 C 1.53718 * 108.15748 * 129.44103 * 8 7 5 10 10 O 1.42955 * 109.14724 * 52.53569 * 9 8 7 11 11 C 1.42959 * 114.17174 * 297.28742 * 10 9 8 12 12 H 1.08996 * 109.55834 * 302.63373 * 11 10 9 13 13 C 1.52998 * 109.51621 * 182.50381 * 11 10 9 14 14 H 1.09003 * 109.47131 * 185.25390 * 13 11 10 15 15 C 1.52998 * 109.47364 * 305.25690 * 13 11 10 16 16 N 1.46501 * 109.46829 * 65.25865 * 13 11 10 17 17 C 1.36936 * 119.99858 * 155.00075 * 16 13 11 18 18 H 1.08000 * 120.00231 * 359.97438 * 17 16 13 19 19 C 1.38816 * 119.99789 * 179.97438 * 17 16 13 20 20 N 1.31612 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99891 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47214 * 120.00507 * 21 19 17 24 24 H 1.48496 * 109.47305 * 240.00548 * 21 19 17 25 25 C 1.47147 * 120.98082 * 175.69647 * 7 5 4 26 26 C 1.41452 * 107.00694 * 179.74681 * 4 3 2 27 27 N 1.30313 * 108.13996 * 0.22854 * 26 4 3 28 28 N 1.34659 * 126.40952 * 270.46498 * 3 2 1 29 29 C 1.46505 * 125.74052 * 0.02562 * 28 3 2 30 30 H 1.09009 * 109.46764 * 184.92746 * 1 2 3 31 31 H 1.08991 * 109.47169 * 304.92571 * 1 2 3 32 32 H 1.09002 * 109.47080 * 64.93383 * 1 2 3 33 33 H 1.08998 * 109.68563 * 249.21777 * 8 7 5 34 34 H 1.08996 * 109.68324 * 9.77682 * 8 7 5 35 35 H 1.09003 * 109.65475 * 292.57355 * 9 8 7 36 36 H 1.08999 * 109.48683 * 172.40524 * 9 8 7 37 37 H 1.09003 * 109.47242 * 59.99768 * 15 13 11 38 38 H 1.08999 * 109.47412 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.47445 * 300.00166 * 15 13 11 40 40 H 0.97002 * 120.00057 * 334.99441 * 16 13 11 41 41 H 0.97001 * 120.00322 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.68681 * 350.22773 * 25 7 5 43 43 H 1.09004 * 109.68203 * 110.78252 * 25 7 5 44 44 H 1.08010 * 125.93339 * 180.25464 * 26 4 3 45 45 H 1.08997 * 109.47069 * 275.36527 * 29 28 3 46 46 H 1.09001 * 109.46903 * 35.37033 * 29 28 3 47 47 H 1.09001 * 109.46838 * 155.36873 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 6 2.4237 1.9380 1.1187 5 6 2.2353 1.5491 2.5230 6 8 2.5421 0.4307 2.8909 7 7 1.7225 2.4313 3.4035 8 6 1.4375 3.8193 3.0064 9 6 -0.0023 4.1525 3.4292 10 8 -0.1678 3.8423 4.8149 11 6 0.0023 2.4582 5.1293 12 1 -0.6990 1.8624 4.5450 13 6 -0.2581 2.2370 6.6206 14 1 -0.0380 1.2010 6.8782 15 6 0.6394 3.1677 7.4386 16 7 -1.6629 2.5265 6.9192 17 6 -2.2672 1.9436 8.0009 18 1 -1.7083 1.2701 8.6338 19 6 -3.5981 2.2183 8.2841 20 7 -4.2793 3.0387 7.5126 21 14 -4.4226 1.4226 9.7593 22 1 -3.4477 0.5479 10.4592 23 1 -4.8973 2.4779 10.6900 24 1 -5.5781 0.6097 9.3019 25 6 1.4371 2.0366 4.7921 26 6 3.0323 3.1253 0.6489 27 7 3.0112 3.1040 -0.6539 28 7 2.3985 1.9221 -1.0837 29 6 2.1840 1.5273 -2.4782 30 1 -0.3633 -1.0240 0.0883 31 1 -0.3633 0.5883 0.8425 32 1 -0.3633 0.4354 -0.9309 33 1 2.1345 4.4939 3.5036 34 1 1.5365 3.9196 1.9256 35 1 -0.7036 3.5635 2.8380 36 1 -0.1922 5.2137 3.2683 37 1 0.4193 4.2037 7.1810 38 1 0.4535 3.0105 8.5011 39 1 1.6846 2.9524 7.2165 40 1 -2.1649 3.1312 6.3506 41 1 -5.2092 3.2309 7.7107 42 1 1.5359 0.9560 4.8943 43 1 2.1341 2.5349 5.4660 44 1 3.4437 3.9127 1.2632 45 1 3.0009 0.8830 -2.8031 46 1 1.2405 0.9881 -2.5621 47 1 2.1511 2.4173 -3.1067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700608748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:47 Heat of formation + Delta-G solvation = -0.655920 kcal Electronic energy + Delta-G solvation = -30566.948995 eV Core-core repulsion = 26367.729429 eV Total energy + Delta-G solvation = -4199.219566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96851 -40.01495 -38.52886 -38.15091 -35.48241 -34.50226 -33.74067 -32.45997 -30.55921 -30.11207 -28.49503 -28.13602 -27.18453 -26.78228 -24.72462 -23.51255 -23.15613 -21.73622 -21.43866 -19.76174 -19.53947 -18.13529 -17.38647 -17.10759 -16.81127 -16.44125 -16.02488 -15.77646 -15.26646 -15.08306 -15.00611 -14.84070 -14.51524 -14.32862 -13.95796 -13.89409 -13.32440 -13.23509 -13.22116 -12.97729 -12.82314 -12.47269 -12.31974 -12.10159 -11.94142 -11.71005 -11.29865 -11.10195 -10.83887 -10.70738 -10.65433 -10.49811 -10.24516 -10.03263 -9.85315 -9.80057 -9.73382 -9.62111 -8.95770 -8.88279 -8.40216 -6.91271 -5.72112 -3.00503 0.96188 1.71577 1.88240 2.75335 2.97233 3.20605 3.45696 3.51635 3.53637 3.99193 4.01778 4.49637 4.58872 4.63268 4.67520 4.70419 4.79231 4.83675 4.91200 4.96452 4.99521 5.12733 5.17606 5.22069 5.25883 5.39174 5.50414 5.61626 5.67706 5.71935 5.75505 5.85066 5.99503 6.01847 6.04438 6.25453 6.44711 6.49739 6.69022 6.85941 6.93311 7.10786 7.19711 7.34378 7.50988 7.74266 8.17151 8.46188 9.58178 10.16085 10.52734 11.50445 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.002691 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.538558 B =10402.202857 C =10835.326476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.310 3.690 4 C -0.289 4.289 5 C 0.596 3.404 6 O -0.531 6.531 7 N -0.608 5.608 8 C 0.068 3.932 9 C 0.047 3.953 10 O -0.358 6.358 11 C 0.077 3.923 12 H 0.062 0.938 13 C 0.185 3.815 14 H 0.059 0.941 15 C -0.162 4.162 16 N -0.719 5.719 17 C -0.236 4.236 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.085 3.915 26 C 0.089 3.911 27 N -0.276 5.276 28 N -0.369 5.369 29 C 0.096 3.904 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.389 0.611 41 H 0.253 0.747 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.197 0.803 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.586 0.559 -21.228 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.138 3.862 4 C -0.305 4.305 5 C 0.384 3.616 6 O -0.408 6.408 7 N -0.342 5.342 8 C -0.055 4.055 9 C -0.031 4.031 10 O -0.276 6.276 11 C 0.018 3.982 12 H 0.080 0.920 13 C 0.074 3.926 14 H 0.077 0.923 15 C -0.222 4.222 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.038 4.038 26 C -0.097 4.097 27 N -0.099 5.099 28 N -0.158 5.158 29 C -0.045 4.045 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.223 0.777 41 H 0.063 0.937 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.214 0.786 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.971 0.290 -21.919 25.995 hybrid contribution -1.005 -0.595 0.958 1.511 sum 12.966 -0.305 -20.960 24.648 Atomic orbital electron populations 1.23238 0.76555 1.04997 1.01363 1.86066 1.21387 1.20436 1.92969 1.19200 0.95883 0.84894 0.86241 1.19926 1.18477 0.98803 0.93268 1.17052 0.76910 0.84109 0.83525 1.90815 1.50178 1.20729 1.79050 1.48003 1.63545 1.11167 1.11458 1.22749 0.98583 0.82636 1.01572 1.22961 0.93924 1.01679 0.84526 1.88098 1.91470 1.25199 1.22805 1.22965 0.93603 0.82638 0.99043 0.92031 1.20199 0.87356 0.97100 0.87939 0.92282 1.22409 0.97286 1.01541 1.00993 1.42367 1.05727 1.55259 1.32746 1.19300 0.93566 1.20702 1.03200 0.91108 1.24733 0.96835 1.00217 0.99230 1.69685 1.09315 1.39361 1.39603 0.86141 0.79381 0.78457 0.82371 1.20549 1.21937 1.21980 1.22494 0.97670 1.02797 0.80796 1.23916 0.97548 0.96537 0.91723 1.77224 1.19204 1.00286 1.13174 1.48900 1.45776 1.14603 1.06557 1.21982 1.02980 1.02335 0.77176 0.87155 0.92231 0.93073 0.90212 0.88846 0.93149 0.87950 0.92430 0.92930 0.94581 0.77708 0.93666 0.88222 0.90025 0.78615 0.89972 0.89576 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.13 101.05 1.12 1.40 16 2 O -0.30 -3.51 10.45 -17.72 -0.19 -3.69 16 3 C 0.31 3.66 7.03 -16.03 -0.11 3.55 16 4 C -0.29 -3.59 5.20 -104.88 -0.55 -4.14 16 5 C 0.60 8.82 7.56 -12.74 -0.10 8.72 16 6 O -0.53 -9.83 16.60 5.22 0.09 -9.75 16 7 N -0.61 -8.11 3.01 -173.47 -0.52 -8.64 16 8 C 0.07 0.71 6.00 -3.31 -0.02 0.69 16 9 C 0.05 0.58 7.00 37.53 0.26 0.84 16 10 O -0.36 -5.99 9.24 -35.23 -0.33 -6.31 16 11 C 0.08 1.31 2.61 -26.58 -0.07 1.24 16 12 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 13 C 0.18 3.69 2.77 -67.93 -0.19 3.51 16 14 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 15 C -0.16 -2.99 9.06 37.16 0.34 -2.65 16 16 N -0.72 -18.21 5.10 -53.42 -0.27 -18.48 16 17 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C 0.08 1.26 5.81 -3.53 -0.02 1.24 16 26 C 0.09 0.88 9.63 -16.97 -0.16 0.72 16 27 N -0.28 -2.87 12.48 30.88 0.39 -2.48 16 28 N -0.37 -3.60 3.99 -67.67 -0.27 -3.87 16 29 C 0.10 0.51 11.38 59.85 0.68 1.19 16 30 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.30 7.97 -51.93 -0.41 -0.11 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.80 4.66 -51.93 -0.24 0.56 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.04 0.55 6.42 -51.93 -0.33 0.22 16 40 H 0.39 10.61 7.59 -40.82 -0.31 10.30 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 1.57 7.11 -51.93 -0.37 1.20 16 43 H 0.08 1.14 6.27 -51.93 -0.33 0.82 16 44 H 0.20 1.32 7.51 -52.48 -0.39 0.93 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.32 7.97 -51.93 -0.41 -0.09 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -36.23 385.95 -5.61 -41.84 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.96 Total: 6.56 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 0.94 Total: 9.08 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.04 Total: -61.03 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.42 Total: -19.75 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.23 -5.61 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.185 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds