Wall clock time and date at job start Tue Mar 31 2020 22:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99636 * 2 1 4 4 C 1.52998 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47310 * 65.00180 * 4 3 2 6 6 N 1.28388 * 119.09863 * 269.99904 * 5 4 3 7 7 C 1.31405 * 122.26298 * 179.97438 * 6 5 4 8 8 C 1.47890 * 119.88874 * 180.02562 * 7 6 5 9 9 O 1.21557 * 119.99726 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00166 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99622 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47688 * 34.99992 * 11 10 8 13 13 C 1.52999 * 109.47061 * 274.99352 * 11 10 8 14 14 C 1.53000 * 109.46778 * 154.99840 * 11 10 8 15 15 C 1.52999 * 109.46976 * 294.99592 * 14 11 10 16 16 N 1.46503 * 109.47156 * 180.02562 * 15 14 11 17 17 C 1.36933 * 120.00109 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00215 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99918 * 180.02562 * 17 16 15 20 20 N 1.31608 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99713 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47531 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46948 * 119.99891 * 21 19 17 24 24 H 1.48500 * 109.47329 * 239.99670 * 21 19 17 25 25 C 1.41571 * 120.21528 * 359.97438 * 7 6 5 26 26 C 1.36332 * 118.24014 * 0.02562 * 25 7 6 27 27 C 1.34606 * 119.10190 * 89.72198 * 5 4 3 28 28 O 1.21983 * 120.22483 * 0.02999 * 27 5 4 29 29 H 1.09002 * 109.47609 * 300.00328 * 1 2 3 30 30 H 1.09008 * 109.47009 * 60.00436 * 1 2 3 31 31 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47195 * 60.00104 * 3 2 1 33 33 H 1.08995 * 109.47261 * 299.99621 * 3 2 1 34 34 H 1.09001 * 109.47466 * 305.00104 * 4 3 2 35 35 H 1.09007 * 109.47318 * 184.99544 * 4 3 2 36 36 H 0.96993 * 120.00170 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46864 * 60.00185 * 13 11 10 38 38 H 1.08994 * 109.47316 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.47235 * 300.00232 * 13 11 10 40 40 H 1.09001 * 109.47848 * 54.99777 * 14 11 10 41 41 H 1.09006 * 109.47313 * 174.99722 * 14 11 10 42 42 H 1.09005 * 109.47314 * 300.00066 * 15 14 11 43 43 H 1.08998 * 109.47570 * 60.00135 * 15 14 11 44 44 H 0.97002 * 120.00088 * 0.02562 * 16 15 14 45 45 H 0.97004 * 119.99999 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.88210 * 179.97438 * 25 7 6 47 47 H 1.08002 * 121.03458 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 7 4.0843 -0.7140 -1.3101 7 6 4.4738 -1.3354 -2.4004 8 6 4.5788 -2.8105 -2.4103 9 8 4.9385 -3.3874 -3.4180 10 7 4.2748 -3.5153 -1.3025 11 6 4.3794 -4.9765 -1.3122 12 1 5.2197 -5.2765 -1.9383 13 6 3.0875 -5.5765 -1.8706 14 6 4.6011 -5.4814 0.1149 15 6 5.9532 -4.9822 0.6283 16 7 6.1657 -5.4662 1.9946 17 6 7.3155 -5.1430 2.6644 18 1 8.0660 -4.5317 2.1852 19 6 7.5171 -5.6021 3.9589 20 7 6.6033 -6.3483 4.5423 21 14 9.0860 -5.1619 4.8722 22 1 9.9461 -4.3206 4.0017 23 1 8.7456 -4.4106 6.1071 24 1 9.8137 -6.4048 5.2337 25 6 4.7921 -0.5974 -3.5659 26 6 4.6830 0.7607 -3.5194 27 6 4.2528 1.3488 -2.3091 28 8 4.1363 2.5600 -2.2224 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9784 2.1766 0.0901 36 1 3.9874 -3.0550 -0.4985 37 1 2.9296 -5.2168 -2.8873 38 1 3.1652 -6.6637 -1.8775 39 1 2.2472 -5.2766 -1.2444 40 1 3.8066 -5.1069 0.7605 41 1 4.5902 -6.5714 0.1206 42 1 6.7477 -5.3568 -0.0172 43 1 5.9641 -3.8923 0.6227 44 1 5.4919 -6.0155 2.4249 45 1 6.7440 -6.6687 5.4470 46 1 5.1138 -1.0971 -4.4677 47 1 4.9148 1.3678 -4.3820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715665565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:13 Heat of formation + Delta-G solvation = -39.895880 kcal Electronic energy + Delta-G solvation = -29646.555108 eV Core-core repulsion = 25445.633969 eV Total energy + Delta-G solvation = -4200.921139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44065 -39.87553 -38.27315 -37.99590 -36.61667 -35.23226 -34.36969 -32.49834 -31.66209 -30.90648 -30.03053 -27.86222 -27.01506 -25.84417 -24.91205 -24.01163 -23.00898 -22.03713 -21.25260 -20.52447 -18.95506 -18.40181 -17.27166 -17.04935 -16.92191 -16.86679 -16.41807 -16.14093 -15.70895 -15.12854 -14.96448 -14.60113 -14.52683 -14.05823 -13.82953 -13.62006 -13.54245 -13.30871 -13.26694 -13.22451 -12.83451 -12.66215 -12.43374 -12.26943 -11.88605 -11.83255 -11.61773 -11.20568 -11.02680 -10.80387 -10.75702 -10.64281 -10.55553 -10.32806 -10.11257 -10.01144 -9.96871 -9.69756 -9.10282 -8.87417 -8.81623 -6.91131 -5.76139 -3.04466 0.17593 0.88488 1.75393 2.60515 2.99863 3.24541 3.38430 3.43502 3.49507 3.51553 3.69281 4.33362 4.43693 4.47073 4.48960 4.58231 4.66478 4.82297 4.95822 4.96791 4.98486 5.03619 5.22256 5.23543 5.30310 5.35964 5.36885 5.39268 5.56098 5.56463 5.70635 5.74175 5.77419 5.94623 6.02652 6.25051 6.29554 6.34959 6.50013 6.69058 6.83730 6.87907 7.18927 7.44632 7.71256 7.71792 8.10524 8.43014 9.54258 10.12279 10.46952 11.46909 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.002966 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.223493 B = 9437.731877 C =10170.940899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.045 3.955 4 C 0.109 3.891 5 N -0.328 5.328 6 N -0.157 5.157 7 C 0.013 3.987 8 C 0.590 3.410 9 O -0.534 6.534 10 N -0.696 5.696 11 C 0.144 3.856 12 H 0.092 0.908 13 C -0.161 4.161 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.026 4.026 26 C -0.199 4.199 27 C 0.480 3.520 28 O -0.531 6.531 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.412 0.588 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.163 0.837 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 13.901 -14.784 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.033 4.033 4 C -0.011 4.011 5 N -0.150 5.150 6 N 0.013 4.987 7 C -0.158 4.158 8 C 0.373 3.627 9 O -0.409 6.409 10 N -0.348 5.348 11 C 0.040 3.960 12 H 0.110 0.890 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.049 4.049 26 C -0.229 4.229 27 C 0.280 3.720 28 O -0.410 6.410 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.181 0.819 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.853 13.955 -14.521 23.891 hybrid contribution 0.483 0.809 0.386 1.018 sum -12.370 14.763 -14.134 23.890 Atomic orbital electron populations 1.22762 0.80649 1.03169 0.99853 1.87994 1.19932 1.26508 1.95423 1.22866 0.92407 0.86107 1.01884 1.22243 0.94041 1.00838 0.83931 1.46777 1.51765 1.02212 1.14241 1.71165 1.05573 0.95888 1.26108 1.21828 1.07251 0.95781 0.90930 1.17161 0.77718 0.83820 0.84018 1.90809 1.47898 1.69605 1.32551 1.46000 1.66522 1.07880 1.14361 1.21080 0.98823 0.78073 0.98051 0.89004 1.22163 0.97355 1.01204 1.01211 1.22072 0.99677 1.01916 0.93676 1.20646 0.92905 0.96372 0.87514 1.42366 1.22067 1.62279 1.11080 1.19276 0.95910 1.25958 0.95722 0.91225 1.24727 0.98356 1.00597 0.97335 1.69664 1.34465 1.39926 1.14208 0.86134 0.82903 0.77540 0.79743 1.20580 1.21881 1.21852 1.22254 0.90424 0.93656 0.98593 1.22637 1.06009 0.95455 0.98763 1.18146 0.80519 0.88159 0.85202 1.90962 1.54281 1.12576 1.83137 0.93803 0.94344 0.89233 0.90647 0.92526 0.86387 0.85757 0.75198 0.92321 0.91356 0.92387 0.91191 0.90068 0.96398 0.96296 0.78311 0.93594 0.81925 0.81479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -3.76 10.54 -35.23 -0.37 -4.13 16 3 C 0.05 0.36 6.28 37.16 0.23 0.60 16 4 C 0.11 0.95 5.94 -4.04 -0.02 0.92 16 5 N -0.33 -3.60 3.17 -63.33 -0.20 -3.80 16 6 N -0.16 -1.82 10.00 33.41 0.33 -1.49 16 7 C 0.01 0.16 6.84 -82.83 -0.57 -0.41 16 8 C 0.59 7.77 7.77 -12.31 -0.10 7.68 16 9 O -0.53 -8.11 16.05 5.32 0.09 -8.03 16 10 N -0.70 -8.84 4.52 -54.74 -0.25 -9.09 16 11 C 0.14 1.87 2.57 -67.93 -0.17 1.69 16 12 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 13 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 14 C -0.14 -2.03 4.87 -26.73 -0.13 -2.16 16 15 C 0.15 3.02 6.15 -4.04 -0.02 3.00 16 16 N -0.73 -18.48 5.60 -59.90 -0.34 -18.81 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C -0.03 -0.25 9.67 -39.00 -0.38 -0.63 16 26 C -0.20 -1.90 10.11 -39.12 -0.40 -2.30 16 27 C 0.48 5.63 7.46 -15.18 -0.11 5.51 16 28 O -0.53 -7.32 16.62 4.93 0.08 -7.24 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.12 0.94 7.37 -51.93 -0.38 0.56 16 36 H 0.41 5.08 7.94 -40.82 -0.32 4.75 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 44 H 0.38 10.06 7.67 -40.82 -0.31 9.74 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.16 1.30 7.72 -52.49 -0.41 0.90 16 47 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -34.80 401.99 -6.61 -41.41 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.26 Total: 8.62 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.45 Total: 6.49 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.28 Total: -60.62 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.20 Total: -19.39 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.80 -6.61 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715665565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.514 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds