Wall clock time and date at job start Tue Mar 31 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99636 * 2 1 4 4 C 1.52998 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47310 * 65.00180 * 4 3 2 6 6 N 1.28388 * 119.09863 * 269.99904 * 5 4 3 7 7 C 1.31405 * 122.26298 * 179.97438 * 6 5 4 8 8 C 1.47890 * 119.88874 * 180.02562 * 7 6 5 9 9 O 1.21557 * 119.99726 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00166 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99622 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47688 * 34.99992 * 11 10 8 13 13 C 1.52999 * 109.47061 * 274.99352 * 11 10 8 14 14 C 1.53000 * 109.46778 * 154.99840 * 11 10 8 15 15 C 1.52999 * 109.46976 * 294.99592 * 14 11 10 16 16 N 1.46503 * 109.47156 * 180.02562 * 15 14 11 17 17 C 1.36933 * 120.00109 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00215 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99918 * 180.02562 * 17 16 15 20 20 N 1.31608 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99713 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47531 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46948 * 119.99891 * 21 19 17 24 24 H 1.48500 * 109.47329 * 239.99670 * 21 19 17 25 25 C 1.41571 * 120.21528 * 359.97438 * 7 6 5 26 26 C 1.36332 * 118.24014 * 0.02562 * 25 7 6 27 27 C 1.34606 * 119.10190 * 89.72198 * 5 4 3 28 28 O 1.21983 * 120.22483 * 0.02999 * 27 5 4 29 29 H 1.09002 * 109.47609 * 300.00328 * 1 2 3 30 30 H 1.09008 * 109.47009 * 60.00436 * 1 2 3 31 31 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47195 * 60.00104 * 3 2 1 33 33 H 1.08995 * 109.47261 * 299.99621 * 3 2 1 34 34 H 1.09001 * 109.47466 * 305.00104 * 4 3 2 35 35 H 1.09007 * 109.47318 * 184.99544 * 4 3 2 36 36 H 0.96993 * 120.00170 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46864 * 60.00185 * 13 11 10 38 38 H 1.08994 * 109.47316 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.47235 * 300.00232 * 13 11 10 40 40 H 1.09001 * 109.47848 * 54.99777 * 14 11 10 41 41 H 1.09006 * 109.47313 * 174.99722 * 14 11 10 42 42 H 1.09005 * 109.47314 * 300.00066 * 15 14 11 43 43 H 1.08998 * 109.47570 * 60.00135 * 15 14 11 44 44 H 0.97002 * 120.00088 * 0.02562 * 16 15 14 45 45 H 0.97004 * 119.99999 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.88210 * 179.97438 * 25 7 6 47 47 H 1.08002 * 121.03458 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 7 4.0843 -0.7140 -1.3101 7 6 4.4738 -1.3354 -2.4004 8 6 4.5788 -2.8105 -2.4103 9 8 4.9385 -3.3874 -3.4180 10 7 4.2748 -3.5153 -1.3025 11 6 4.3794 -4.9765 -1.3122 12 1 5.2197 -5.2765 -1.9383 13 6 3.0875 -5.5765 -1.8706 14 6 4.6011 -5.4814 0.1149 15 6 5.9532 -4.9822 0.6283 16 7 6.1657 -5.4662 1.9946 17 6 7.3155 -5.1430 2.6644 18 1 8.0660 -4.5317 2.1852 19 6 7.5171 -5.6021 3.9589 20 7 6.6033 -6.3483 4.5423 21 14 9.0860 -5.1619 4.8722 22 1 9.9461 -4.3206 4.0017 23 1 8.7456 -4.4106 6.1071 24 1 9.8137 -6.4048 5.2337 25 6 4.7921 -0.5974 -3.5659 26 6 4.6830 0.7607 -3.5194 27 6 4.2528 1.3488 -2.3091 28 8 4.1363 2.5600 -2.2224 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9784 2.1766 0.0901 36 1 3.9874 -3.0550 -0.4985 37 1 2.9296 -5.2168 -2.8873 38 1 3.1652 -6.6637 -1.8775 39 1 2.2472 -5.2766 -1.2444 40 1 3.8066 -5.1069 0.7605 41 1 4.5902 -6.5714 0.1206 42 1 6.7477 -5.3568 -0.0172 43 1 5.9641 -3.8923 0.6227 44 1 5.4919 -6.0155 2.4249 45 1 6.7440 -6.6687 5.4470 46 1 5.1138 -1.0971 -4.4677 47 1 4.9148 1.3678 -4.3820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715665565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:12 Heat of formation + Delta-G solvation = -65.466716 kcal Electronic energy + Delta-G solvation = -29647.663943 eV Core-core repulsion = 25445.633969 eV Total energy + Delta-G solvation = -4202.029973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.29993 -40.92581 -38.96346 -38.91949 -37.88130 -36.18913 -35.96085 -33.76420 -32.96774 -32.08410 -30.99434 -29.37345 -27.66943 -26.65547 -25.89811 -25.63393 -23.89024 -23.27245 -22.59663 -21.63485 -19.93627 -19.33417 -19.00385 -18.01537 -17.85323 -17.60734 -17.23817 -17.17029 -16.69650 -16.41183 -16.03969 -15.73795 -15.51810 -15.41249 -15.17721 -15.02205 -14.72560 -14.44984 -14.25267 -14.19522 -13.87975 -13.60828 -13.24335 -13.07668 -12.97651 -12.90061 -12.86334 -12.74831 -12.35950 -12.23755 -12.21127 -11.96858 -11.89946 -11.61220 -11.51980 -11.34917 -10.95771 -10.92861 -10.71079 -10.15316 -9.72358 -8.98581 -7.94864 -5.23239 -0.64316 -0.01950 0.94772 1.47788 1.48354 1.58351 1.65630 2.01130 2.40311 2.56195 2.67709 2.86127 3.39110 3.54784 3.58087 3.68918 3.73674 3.80213 3.95429 4.10122 4.20973 4.24377 4.32822 4.41712 4.42537 4.50258 4.51963 4.56920 4.61490 4.67456 4.69683 4.81436 4.81862 4.83710 4.90609 4.94027 5.04624 5.24529 5.32238 5.38404 5.50147 5.54375 6.08998 6.28008 6.30327 6.43375 6.82232 7.07052 7.34749 8.10487 8.34446 9.28719 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.002966 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.223493 B = 9437.731877 C =10170.940899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.048 3.952 4 C 0.101 3.899 5 N -0.326 5.326 6 N -0.164 5.164 7 C 0.006 3.994 8 C 0.591 3.409 9 O -0.555 6.555 10 N -0.695 5.695 11 C 0.151 3.849 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.120 4.120 15 C 0.153 3.847 16 N -0.745 5.745 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.023 4.023 26 C -0.193 4.193 27 C 0.471 3.529 28 O -0.557 6.557 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.011 0.989 43 H 0.020 0.980 44 H 0.376 0.624 45 H 0.252 0.748 46 H 0.181 0.819 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 14.579 -15.360 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.030 4.030 4 C -0.017 4.017 5 N -0.148 5.148 6 N 0.005 4.995 7 C -0.165 4.165 8 C 0.375 3.625 9 O -0.432 6.432 10 N -0.346 5.346 11 C 0.046 3.954 12 H 0.099 0.901 13 C -0.211 4.211 14 C -0.158 4.158 15 C 0.027 3.973 16 N -0.388 5.388 17 C -0.378 4.378 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.046 4.046 26 C -0.222 4.222 27 C 0.272 3.728 28 O -0.438 6.438 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.029 0.971 43 H 0.038 0.962 44 H 0.208 0.792 45 H 0.061 0.939 46 H 0.198 0.802 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.058 14.639 -15.120 24.767 hybrid contribution 0.519 0.610 0.546 0.969 sum -12.539 15.249 -14.574 24.539 Atomic orbital electron populations 1.22882 0.79523 1.03664 1.00733 1.87952 1.21307 1.27537 1.95606 1.22904 0.91719 0.85678 1.02659 1.22491 0.94785 1.01237 0.83234 1.46951 1.51101 1.01946 1.14835 1.71152 1.05852 0.96216 1.26284 1.21768 1.07751 0.95149 0.91837 1.17307 0.77149 0.84411 0.83643 1.90794 1.48939 1.70224 1.33235 1.46001 1.66299 1.07826 1.14462 1.20971 0.99684 0.78342 0.96369 0.90106 1.22089 0.96257 1.01825 1.00956 1.21912 0.96950 1.02104 0.94806 1.20775 0.95348 0.96237 0.84969 1.42562 1.21140 1.62253 1.12861 1.19624 0.96737 1.25296 0.96111 0.91152 1.25508 1.01483 1.01108 0.98318 1.69802 1.36296 1.41283 1.14363 0.85127 0.79419 0.77162 0.78377 1.19386 1.21794 1.21942 1.22376 0.90136 0.93580 0.98500 1.22869 1.05082 0.95549 0.98682 1.18507 0.80429 0.87979 0.85921 1.90947 1.55692 1.13510 1.83666 0.92436 0.93933 0.89005 0.88202 0.93288 0.85992 0.84811 0.74943 0.92582 0.90138 0.91483 0.90595 0.89641 0.97108 0.96218 0.79212 0.93927 0.80173 0.79042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -7.64 10.54 -148.98 -1.57 -9.21 16 3 C 0.05 0.72 6.28 71.98 0.45 1.17 16 4 C 0.10 1.69 5.94 86.38 0.51 2.20 16 5 N -0.33 -6.95 3.17 -472.46 -1.50 -8.44 16 6 N -0.16 -3.70 10.00 -48.20 -0.48 -4.18 16 7 C 0.01 0.13 6.84 42.59 0.29 0.42 16 8 C 0.59 15.07 7.77 86.80 0.67 15.74 16 9 O -0.56 -16.39 16.05 -3.89 -0.06 -16.45 16 10 N -0.69 -17.01 4.52 -445.36 -2.01 -19.02 16 11 C 0.15 3.73 2.57 44.99 0.12 3.85 16 12 H 0.08 2.22 7.58 -2.39 -0.02 2.21 16 13 C -0.15 -3.10 9.48 71.98 0.68 -2.42 16 14 C -0.12 -3.46 4.87 30.59 0.15 -3.31 16 15 C 0.15 5.98 6.15 86.38 0.53 6.51 16 16 N -0.75 -37.52 5.60 -343.44 -1.92 -39.44 16 17 C -0.25 -13.79 9.99 84.04 0.84 -12.95 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -4.11 5.50 84.87 0.47 -3.64 16 20 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 21 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 C -0.02 -0.41 9.67 22.65 0.22 -0.19 16 26 C -0.19 -3.38 10.11 22.57 0.23 -3.15 16 27 C 0.47 10.63 7.46 85.01 0.63 11.26 16 28 O -0.56 -15.02 16.62 -5.26 -0.09 -15.10 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.13 1.94 7.37 -2.38 -0.02 1.92 16 36 H 0.41 9.86 7.94 -92.71 -0.74 9.12 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 44 H 0.38 19.82 7.67 -92.71 -0.71 19.11 16 45 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.18 2.55 7.72 -2.91 -0.02 2.53 16 47 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.40 401.99 1.27 -72.13 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.45 Total: 32.82 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 7.05 Total: 17.12 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.63 Total: -129.37 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.72 Total: -40.77 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -73.40 1.27 -72.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715665565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.668 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds