Wall clock time and date at job start Tue Mar 31 2020 22:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00180 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47586 * 89.99558 * 11 9 7 13 13 H 1.48505 * 109.47293 * 210.00502 * 11 9 7 14 14 H 1.48505 * 109.46772 * 329.99807 * 11 9 7 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 N 1.46506 * 109.47326 * 179.97438 * 18 16 15 20 20 C 1.34779 * 119.99908 * 179.97438 * 19 18 16 21 21 O 1.21591 * 119.99772 * 0.02562 * 20 19 18 22 22 N 1.34779 * 119.99964 * 180.02562 * 20 19 18 23 23 C 1.46502 * 120.00090 * 180.02562 * 22 20 19 24 24 C 1.50699 * 109.47100 * 179.97438 * 23 22 20 25 25 C 1.34509 * 125.78938 * 89.99713 * 24 23 22 26 26 C 1.41379 * 106.84253 * 179.97438 * 25 24 23 27 27 C 1.34518 * 106.83927 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.78956 * 269.69237 * 24 23 22 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 0.97010 * 119.99864 * 180.02562 * 10 9 7 38 38 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 39 39 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 40 40 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 41 41 H 0.96996 * 119.99902 * 0.02562 * 19 18 16 42 42 H 0.97000 * 120.00071 * 0.02562 * 22 20 19 43 43 H 1.09002 * 109.46844 * 299.99989 * 23 22 20 44 44 H 1.09001 * 109.47099 * 60.00025 * 23 22 20 45 45 H 1.08005 * 126.57745 * 0.04578 * 25 24 23 46 46 H 1.07997 * 126.58175 * 179.97438 * 26 25 24 47 47 H 1.08000 * 125.78874 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3952 -1.3405 2.7793 8 1 6.0937 -0.8603 2.1100 9 6 5.8579 -1.9949 3.9126 10 7 7.1479 -2.0298 4.1718 11 14 4.6499 -2.8261 5.0699 12 1 4.4448 -4.2338 4.6438 13 1 5.1916 -2.8012 6.4524 14 1 3.3528 -2.1040 5.0335 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 7 2.6983 0.2132 -4.7092 20 6 3.1206 -0.2022 -5.9198 21 8 3.4607 -1.3584 -6.0812 22 7 3.1657 0.6638 -6.9515 23 6 3.6241 0.2122 -8.2676 24 6 3.5790 1.3643 -9.2379 25 6 4.5800 2.2301 -9.4782 26 6 4.1091 3.1408 -10.4516 27 6 2.8482 2.7774 -10.7475 28 8 2.5345 1.6974 -10.0136 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 7.4713 -2.4876 4.9637 38 1 2.2489 -1.6317 -1.1529 39 1 3.6491 -1.1200 -3.3981 40 1 1.9775 -1.5504 -3.8328 41 1 2.4273 1.1356 -4.5802 42 1 2.8947 1.5862 -6.8226 43 1 4.6466 -0.1574 -8.1890 44 1 2.9750 -0.5878 -8.6236 45 1 5.5566 2.2289 -9.0169 46 1 4.6563 3.9697 -10.8755 47 1 2.2000 3.2679 -11.4587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715705333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:25 Heat of formation + Delta-G solvation = -66.441784 kcal Electronic energy + Delta-G solvation = -27735.277392 eV Core-core repulsion = 23533.205136 eV Total energy + Delta-G solvation = -4202.072256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55718 -41.43494 -40.58630 -38.03611 -36.35352 -36.16447 -35.45711 -33.93900 -33.78936 -32.55770 -31.45100 -29.77628 -28.66611 -26.46144 -25.64136 -23.23528 -22.72194 -22.47658 -21.95745 -21.58851 -21.53359 -20.04473 -19.66867 -18.57056 -17.78844 -17.51506 -17.26359 -17.07614 -16.71413 -16.50915 -16.20017 -15.84404 -15.64366 -15.57936 -15.12916 -14.98676 -14.82806 -14.45429 -14.29321 -14.26831 -13.95798 -13.78209 -13.56814 -13.54033 -13.25650 -12.96998 -12.95972 -12.93093 -12.37675 -12.21304 -11.98314 -11.81571 -11.74069 -11.60175 -11.05608 -10.96186 -10.90718 -10.54365 -10.14599 -9.93163 -9.56264 -9.30203 -8.02799 -5.37444 0.55202 1.39211 1.43241 1.44094 1.50430 1.51485 1.72832 2.00206 2.05387 2.30090 2.49494 3.25701 3.28600 3.45011 3.60244 3.66812 4.02768 4.09549 4.12669 4.13732 4.27244 4.34867 4.35294 4.39743 4.51034 4.56718 4.63654 4.77872 4.86967 4.88031 4.99248 5.00918 5.12956 5.19348 5.23885 5.27062 5.28420 5.35065 5.52951 5.54779 5.74774 5.82134 6.14676 6.20742 6.46597 6.90346 7.08210 7.12811 7.42355 7.83318 8.03838 9.18719 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.001647 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.851213 B =16997.138560 C =17898.706356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 H 0.072 0.928 4 C -0.124 4.124 5 C 0.153 3.847 6 N -0.758 5.758 7 C -0.241 4.241 8 H 0.050 0.950 9 C -0.067 4.067 10 N -0.985 5.985 11 Si 0.962 3.038 12 H -0.275 1.275 13 H -0.298 1.298 14 H -0.247 1.247 15 N -0.708 5.708 16 C 0.515 3.485 17 O -0.572 6.572 18 C 0.121 3.879 19 N -0.728 5.728 20 C 0.709 3.291 21 O -0.625 6.625 22 N -0.733 5.733 23 C 0.226 3.774 24 C -0.054 4.054 25 C -0.186 4.186 26 C -0.232 4.232 27 C -0.027 4.027 28 O -0.189 6.189 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.028 0.972 36 H 0.368 0.632 37 H 0.258 0.742 38 H 0.416 0.584 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.412 0.588 42 H 0.410 0.590 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.160 0.840 46 H 0.169 0.831 47 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 8.262 -28.679 34.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 H 0.090 0.910 4 C -0.162 4.162 5 C 0.027 3.973 6 N -0.404 5.404 7 C -0.372 4.372 8 H 0.068 0.932 9 C -0.258 4.258 10 N -0.636 5.636 11 Si 0.789 3.211 12 H -0.201 1.201 13 H -0.225 1.225 14 H -0.171 1.171 15 N -0.360 5.360 16 C 0.301 3.699 17 O -0.452 6.452 18 C -0.007 4.007 19 N -0.386 5.386 20 C 0.409 3.591 21 O -0.506 6.506 22 N -0.389 5.389 23 C 0.102 3.898 24 C -0.103 4.103 25 C -0.206 4.206 26 C -0.251 4.251 27 C -0.094 4.094 28 O -0.085 6.085 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.253 0.747 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.250 0.750 42 H 0.246 0.754 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.177 0.823 46 H 0.186 0.814 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -16.451 7.927 -28.886 34.174 hybrid contribution 0.246 0.171 0.995 1.039 sum -16.205 8.098 -27.891 33.258 Atomic orbital electron populations 1.22084 0.93322 1.03126 1.02571 1.20868 0.94974 0.96552 0.82972 0.91016 1.21984 0.93931 1.02465 0.97827 1.20791 0.93772 0.94397 0.88341 1.42682 1.03409 1.66722 1.27564 1.19024 0.84032 1.28129 1.05970 0.93185 1.25612 0.97667 1.02075 1.00445 1.69913 1.14394 1.49781 1.29470 0.85307 0.79284 0.78920 0.77615 1.20089 1.22485 1.17091 1.45969 1.66134 1.14951 1.08909 1.20621 0.77047 0.86953 0.85288 1.90676 1.52059 1.17089 1.85342 1.20940 1.04216 0.92192 0.83329 1.44654 1.71106 1.15164 1.07706 1.15817 0.78316 0.84425 0.80581 1.90937 1.57056 1.18473 1.84165 1.45012 1.71694 1.13654 1.08590 1.19352 1.02021 0.90971 0.77410 1.22194 0.87465 1.01440 0.99241 1.22016 1.00977 0.96412 1.01193 1.22226 0.96685 1.03861 1.02290 1.24896 0.98267 0.87921 0.98331 1.84039 1.39291 1.40729 1.44478 0.90936 0.90467 0.93079 0.89361 0.89354 0.97155 0.95385 0.79794 0.93322 0.74735 0.87985 0.86855 0.74972 0.75424 0.88048 0.90270 0.82267 0.81385 0.74579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.48 71.98 0.68 -1.92 16 2 C 0.15 3.20 2.57 44.99 0.12 3.32 16 3 H 0.07 1.84 7.58 -2.39 -0.02 1.82 16 4 C -0.12 -2.96 4.87 30.59 0.15 -2.81 16 5 C 0.15 5.44 6.15 86.38 0.53 5.97 16 6 N -0.76 -34.25 5.41 -343.45 -1.86 -36.11 16 7 C -0.24 -13.77 10.47 84.03 0.88 -12.89 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 10 N -0.99 -63.41 13.97 21.65 0.30 -63.11 16 11 Si 0.96 44.48 27.74 68.60 1.90 46.38 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 14 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 15 N -0.71 -13.61 4.53 -442.55 -2.00 -15.61 16 16 C 0.51 11.03 7.86 87.66 0.69 11.72 16 17 O -0.57 -15.61 15.33 -3.07 -0.05 -15.66 16 18 C 0.12 2.25 6.15 85.63 0.53 2.78 16 19 N -0.73 -14.04 5.53 -482.28 -2.67 -16.71 16 20 C 0.71 15.42 8.57 179.05 1.53 16.96 16 21 O -0.63 -18.12 16.34 -4.00 -0.07 -18.19 16 22 N -0.73 -11.74 5.55 -482.28 -2.68 -14.42 16 23 C 0.23 3.43 6.20 85.63 0.53 3.96 16 24 C -0.05 -0.77 6.69 24.83 0.17 -0.60 16 25 C -0.19 -2.39 10.81 22.19 0.24 -2.15 16 26 C -0.23 -2.41 10.91 22.19 0.24 -2.17 16 27 C -0.03 -0.25 12.09 66.97 0.81 0.56 16 28 O -0.19 -2.80 10.65 -2.41 -0.03 -2.83 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.03 1.00 7.75 -2.39 -0.02 0.98 16 36 H 0.37 15.44 5.53 -92.71 -0.51 14.93 16 37 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 38 H 0.42 6.41 8.60 -92.71 -0.80 5.61 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.41 7.39 7.45 -92.71 -0.69 6.70 16 42 H 0.41 5.06 8.48 -92.71 -0.79 4.28 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 47 H 0.24 0.29 8.06 -2.91 -0.02 0.27 16 Total: -1.00 -80.68 401.46 -1.40 -82.08 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.82 Total: 34.91 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.56 Total: 19.26 kcal Atomic # 7 Polarization: -137.06 SS G_CDS: -8.90 Total: -145.96 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.14 Total: -36.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.38 kcal Total: -80.68 -1.40 -82.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715705333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.640 kcal (2) G-P(sol) polarization free energy of solvation -80.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds