Wall clock time and date at job start Tue Mar 31 2020 22:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47030 * 2 1 4 4 N 1.46507 * 109.46692 * 119.99542 * 2 1 3 5 5 C 1.36933 * 119.99715 * 274.99480 * 4 2 1 6 6 H 1.07999 * 120.00417 * 0.02562 * 5 4 2 7 7 C 1.38822 * 119.99688 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47108 * 120.00393 * 9 7 5 12 12 H 1.48502 * 109.47182 * 240.00607 * 9 7 5 13 13 C 1.52993 * 109.47207 * 239.99306 * 2 1 3 14 14 H 1.09000 * 110.88833 * 299.19148 * 13 2 1 15 15 C 1.55162 * 111.00459 * 63.06549 * 13 2 1 16 16 C 1.54319 * 102.94263 * 153.57582 * 15 13 2 17 17 N 1.47022 * 107.27378 * 337.81018 * 16 15 13 18 18 C 1.34772 * 125.65324 * 178.90555 * 17 16 15 19 19 O 1.21282 * 120.00587 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99781 * 0.02562 * 18 17 16 21 21 N 1.46496 * 109.47233 * 179.97438 * 20 18 17 22 22 C 1.34776 * 124.17737 * 89.97799 * 21 20 18 23 23 O 1.21236 * 127.15330 * 359.97438 * 22 21 20 24 24 C 1.51576 * 105.68609 * 180.02562 * 22 21 20 25 25 N 1.47311 * 103.59601 * 359.97438 * 24 22 21 26 26 C 1.46495 * 126.69232 * 179.73368 * 25 24 22 27 27 C 1.33794 * 124.18011 * 270.00358 * 21 20 18 28 28 O 1.21532 * 123.77006 * 359.95271 * 27 21 20 29 29 C 1.47428 * 108.70062 * 359.16695 * 17 16 15 30 30 H 1.08993 * 109.46833 * 54.78661 * 1 2 3 31 31 H 1.09000 * 109.46820 * 174.78739 * 1 2 3 32 32 H 1.08998 * 109.47093 * 294.78770 * 1 2 3 33 33 H 0.96998 * 119.99665 * 95.00757 * 4 2 1 34 34 H 0.97001 * 120.00084 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.71457 * 35.21259 * 15 13 2 36 36 H 1.08995 * 110.72263 * 271.94507 * 15 13 2 37 37 H 1.09000 * 109.88086 * 218.39464 * 16 15 13 38 38 H 1.08998 * 110.01330 * 97.30085 * 16 15 13 39 39 H 1.09003 * 109.46993 * 60.00218 * 20 18 17 40 40 H 1.08997 * 109.47056 * 300.00236 * 20 18 17 41 41 H 1.08997 * 110.60205 * 241.47383 * 24 22 21 42 42 H 1.09004 * 110.59956 * 118.52633 * 24 22 21 43 43 H 1.09001 * 109.47154 * 90.00173 * 26 25 24 44 44 H 1.09007 * 109.47657 * 210.00167 * 26 25 24 45 45 H 1.09005 * 109.47323 * 330.00087 * 26 25 24 46 46 H 1.09003 * 110.36641 * 142.74251 * 29 17 16 47 47 H 1.08997 * 110.36877 * 265.06253 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8920 1.0405 2.4243 7 6 2.6122 -0.6615 3.5092 8 7 2.9261 -1.9383 3.4499 9 14 2.7900 0.2703 5.1183 10 1 2.3741 1.6823 4.9213 11 1 1.9298 -0.3589 6.1524 12 1 4.2070 0.2284 5.5607 13 6 2.0400 -0.7214 -1.2491 14 1 1.7013 -1.7573 -1.2652 15 6 1.6068 0.0253 -2.5384 16 6 2.6982 -0.3755 -3.5532 17 7 3.8802 -0.7887 -2.7826 18 6 5.0419 -1.2313 -3.3031 19 8 5.9543 -1.5468 -2.5690 20 6 5.2073 -1.3341 -4.7975 21 7 6.5482 -1.8362 -5.1071 22 6 6.8565 -3.1417 -5.2372 23 8 6.1051 -4.0863 -5.1240 24 6 8.3384 -3.1833 -5.5532 25 7 8.7297 -1.7632 -5.5662 26 6 10.0694 -1.2267 -5.8180 27 6 7.6183 -1.0553 -5.2950 28 8 7.5893 0.1579 -5.2291 29 6 3.5820 -0.6447 -1.3460 30 1 -0.3633 0.5925 -0.8396 31 1 -0.3633 -1.0234 -0.0934 32 1 -0.3633 0.4308 0.9330 33 1 2.2490 -1.6317 1.1528 34 1 3.2501 -2.3954 4.2418 35 1 1.6066 1.1034 -2.3779 36 1 0.6267 -0.3163 -2.8711 37 1 2.9473 0.4767 -4.1855 38 1 2.3488 -1.2042 -4.1689 39 1 5.0758 -0.3495 -5.2463 40 1 4.4607 -2.0191 -5.1994 41 1 8.5098 -3.6369 -6.5294 42 1 8.8809 -3.7239 -4.7775 43 1 10.1935 -1.0455 -6.8857 44 1 10.1943 -0.2906 -5.2737 45 1 10.8175 -1.9448 -5.4821 46 1 4.0390 -1.4568 -0.7805 47 1 3.9353 0.3192 -0.9800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733534570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:33 Heat of formation + Delta-G solvation = -47.179056 kcal Electronic energy + Delta-G solvation = -29897.165611 eV Core-core repulsion = 25695.928650 eV Total energy + Delta-G solvation = -4201.236961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62990 -39.95748 -38.86374 -37.84917 -36.44104 -35.40190 -35.18387 -32.54437 -30.97538 -30.27771 -28.85736 -28.32372 -27.47682 -26.49106 -23.96266 -23.40471 -22.73105 -21.56978 -20.78709 -19.65676 -19.32158 -17.99572 -17.69357 -17.09946 -17.04527 -16.70681 -16.11913 -15.86995 -15.31731 -15.09098 -14.86171 -14.65580 -14.38058 -14.32410 -13.94553 -13.81100 -13.64145 -13.10151 -12.99366 -12.97841 -12.80612 -12.66869 -12.35714 -12.16414 -11.97910 -11.66570 -11.35090 -11.21377 -10.88359 -10.77690 -10.67327 -10.56857 -10.53605 -10.52073 -10.18135 -9.88440 -9.64988 -9.59908 -9.35453 -8.89701 -8.56030 -6.94096 -5.73496 -3.02564 1.37063 1.65359 2.51998 2.57919 2.70835 3.11611 3.45679 3.51010 3.53465 3.68604 4.28421 4.31065 4.59490 4.60529 4.65760 4.69414 4.76675 4.84997 4.91459 4.98892 5.02273 5.11373 5.25634 5.30547 5.46169 5.49912 5.57160 5.65899 5.88798 5.89219 5.93155 6.02493 6.05780 6.17175 6.30148 6.34882 6.40235 6.55619 6.64045 6.77084 6.86203 7.05194 7.08462 7.52668 7.73072 7.77045 8.11981 8.44386 9.55851 10.12659 10.46996 11.49061 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.002602 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.882529 B =10757.305538 C =11678.152810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.123 4.123 16 C 0.095 3.905 17 N -0.614 5.614 18 C 0.513 3.487 19 O -0.528 6.528 20 C 0.106 3.894 21 N -0.562 5.562 22 C 0.527 3.473 23 O -0.465 6.465 24 C 0.067 3.933 25 N -0.630 5.630 26 C 0.122 3.878 27 C 0.706 3.294 28 O -0.538 6.538 29 C 0.121 3.879 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -0.210 -25.954 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.161 4.161 16 C -0.028 4.028 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.404 6.404 20 C -0.019 4.019 21 N -0.308 5.308 22 C 0.314 3.686 23 O -0.334 6.334 24 C -0.059 4.059 25 N -0.370 5.370 26 C -0.019 4.019 27 C 0.408 3.592 28 O -0.412 6.412 29 C 0.000 4.000 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.812 -0.057 -25.366 26.542 hybrid contribution 0.083 0.082 1.028 1.035 sum 7.895 0.025 -24.338 25.587 Atomic orbital electron populations 1.22440 0.99038 1.00534 1.00385 1.20153 0.91937 0.95156 0.85319 0.93291 1.42431 1.78156 1.10725 1.05281 1.19241 1.36523 0.93835 0.87256 0.91168 1.24738 1.02159 0.95959 0.98056 1.69669 1.50801 1.08678 1.28766 0.86153 0.77308 0.78781 0.84160 1.20589 1.21953 1.21909 1.22645 0.93779 1.00595 0.95171 0.90033 1.22666 0.97541 1.01424 0.94509 1.22160 0.86035 0.99479 0.95128 1.48533 1.12822 1.64392 1.09165 1.20254 0.81842 0.77815 0.90187 1.90757 1.39497 1.48897 1.61283 1.21431 0.82227 1.03742 0.94531 1.45872 1.10480 1.09078 1.65321 1.20866 0.90636 0.82167 0.74913 1.90840 1.56827 1.38716 1.47012 1.22491 0.92654 0.84737 1.06018 1.47413 1.09031 1.06073 1.74440 1.21530 0.78474 1.00303 1.01600 1.15744 0.80544 0.85326 0.77591 1.90985 1.83986 1.10208 1.55978 1.22250 0.95609 1.03055 0.79120 0.94387 0.93630 0.92582 0.78279 0.93580 0.90210 0.89884 0.91317 0.91364 0.85703 0.85823 0.85880 0.85765 0.91924 0.89853 0.90106 0.89788 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.22 37.16 0.34 -2.42 16 2 C 0.18 3.46 2.40 -67.93 -0.16 3.30 16 3 H 0.05 0.94 8.07 -51.93 -0.42 0.53 16 4 N -0.72 -17.76 4.90 -53.42 -0.26 -18.02 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 9 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 13 C -0.10 -1.58 2.62 -88.59 -0.23 -1.81 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -1.36 5.53 -24.90 -0.14 -1.49 16 16 C 0.10 0.97 6.49 -3.07 -0.02 0.95 16 17 N -0.61 -9.01 3.33 -170.66 -0.57 -9.58 16 18 C 0.51 8.17 7.92 -10.99 -0.09 8.08 16 19 O -0.53 -10.85 16.69 5.56 0.09 -10.76 16 20 C 0.11 1.21 5.37 -5.19 -0.03 1.18 16 21 N -0.56 -6.83 2.09 -122.02 -0.26 -7.09 16 22 C 0.53 5.84 8.32 -10.55 -0.09 5.75 16 23 O -0.46 -6.39 17.76 5.59 0.10 -6.29 16 24 C 0.07 0.45 7.66 -4.32 -0.03 0.41 16 25 N -0.63 -5.45 3.42 -187.95 -0.64 -6.10 16 26 C 0.12 0.65 11.18 59.84 0.67 1.32 16 27 C 0.71 8.91 8.31 -88.01 -0.73 8.17 16 28 O -0.54 -8.50 17.15 5.34 0.09 -8.41 16 29 C 0.12 2.12 6.16 -2.65 -0.02 2.10 16 30 H 0.04 0.51 7.58 -51.93 -0.39 0.12 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 34 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.13 1.18 7.86 -51.93 -0.41 0.78 16 40 H 0.12 1.10 8.01 -51.93 -0.42 0.69 16 41 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.56 8.03 -51.92 -0.42 0.14 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 1.75 8.04 -51.93 -0.42 1.34 16 47 H 0.07 1.36 8.02 -51.93 -0.42 0.94 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -38.61 394.85 -7.96 -46.57 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.40 Total: 5.41 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -0.77 Total: 18.38 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.00 Total: -68.53 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: 0.28 Total: -25.46 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.61 -7.96 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733534570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.605 kcal (2) G-P(sol) polarization free energy of solvation -38.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds